A citation-based method for searching scientific literature

Sergey Melnikov, Hui-Si Kwok, Kasidet Manakongtreecheep, Antonia van den Elzen, Carson C Thoreen, Dieter Söll. Mol Biol Evol 2020
Times Cited: 6







List of co-cited articles
50 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Archaea and the origin of eukaryotes.
Laura Eme, Anja Spang, Jonathan Lombard, Courtney W Stairs, Thijs J G Ettema. Nat Rev Microbiol 2017
166
66

History of the ribosome and the origin of translation.
Anton S Petrov, Burak Gulen, Ashlyn M Norris, Nicholas A Kovacs, Chad R Bernier, Kathryn A Lanier, George E Fox, Stephen C Harvey, Roger M Wartell, Nicholas V Hud,[...]. Proc Natl Acad Sci U S A 2015
109
50

Asgard archaea illuminate the origin of eukaryotic cellular complexity.
Katarzyna Zaremba-Niedzwiedzka, Eva F Caceres, Jimmy H Saw, Disa Bäckström, Lina Juzokaite, Emmelien Vancaester, Kiley W Seitz, Karthik Anantharaman, Piotr Starnawski, Kasper U Kjeldsen,[...]. Nature 2017
410
50

Translation: The Universal Structural Core of Life.
Chad R Bernier, Anton S Petrov, Nicholas A Kovacs, Petar I Penev, Loren Dean Williams. Mol Biol Evol 2018
26
50

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs.
Jamie J Cannone, Sankar Subramanian, Murray N Schnare, James R Collett, Lisa M D'Souza, Yushi Du, Brian Feng, Nan Lin, Lakshmi V Madabusi, Kirsten M Müller,[...]. BMC Bioinformatics 2002
50

Origin and evolution of the ribosome.
George E Fox. Cold Spring Harb Perspect Biol 2010
116
50

Phylogenetic structure of the prokaryotic domain: the primary kingdoms.
C R Woese, G E Fox. Proc Natl Acad Sci U S A 1977
50


Promiscuous behaviour of archaeal ribosomal proteins: implications for eukaryotic ribosome evolution.
Jean-Paul Armache, Andreas M Anger, Viter Márquez, Sibylle Franckenberg, Thomas Fröhlich, Elizabeth Villa, Otto Berninghausen, Michael Thomm, Georg J Arnold, Roland Beckmann,[...]. Nucleic Acids Res 2013
44
50

Extreme genome reduction in symbiotic bacteria.
John P McCutcheon, Nancy A Moran. Nat Rev Microbiol 2011
728
50

The primary and secondary structure of yeast 26S rRNA.
G M Veldman, J Klootwijk, V C de Regt, R J Planta, C Branlant, A Krol, J P Ebel. Nucleic Acids Res 1981
220
33

Structure of the 70S ribosome complexed with mRNA and tRNA.
Maria Selmer, Christine M Dunham, Frank V Murphy, Albert Weixlbaumer, Sabine Petry, Ann C Kelley, John R Weir, V Ramakrishnan. Science 2006
938
33

The origin and evolution of the ribosome.
Temple F Smith, Jung C Lee, Robin R Gutell, Hyman Hartman. Biol Direct 2008
50
33

Crystal structure of the eukaryotic ribosome.
Adam Ben-Shem, Lasse Jenner, Gulnara Yusupova, Marat Yusupov. Science 2010
285
33



Microsporidian Encephalitozoon cuniculi, a unicellular eukaryote with an unusual chromosomal dispersion of ribosomal genes and a LSU rRNA reduced to the universal core.
E Peyretaillade, C Biderre, P Peyret, F Duffieux, G Méténier, M Gouy, B Michot, C P Vivarès. Nucleic Acids Res 1998
109
33

Frozen in Time: The History of Proteins.
Nicholas A Kovacs, Anton S Petrov, Kathryn A Lanier, Loren Dean Williams. Mol Biol Evol 2017
36
33


G-Quadruplexes in Human Ribosomal RNA.
Santi Mestre-Fos, Petar I Penev, Suttipong Suttapitugsakul, Michael Hu, Chieri Ito, Anton S Petrov, Roger M Wartell, Ronghu Wu, Loren Dean Williams. J Mol Biol 2019
21
33

Structures of the human and Drosophila 80S ribosome.
Andreas M Anger, Jean-Paul Armache, Otto Berninghausen, Michael Habeck, Marion Subklewe, Daniel N Wilson, Roland Beckmann. Nature 2013
317
33

Rooting the ribosomal tree of life.
Gregory P Fournier, J Peter Gogarten. Mol Biol Evol 2010
36
33

RiboVision suite for visualization and analysis of ribosomes.
Chad R Bernier, Anton S Petrov, Chris C Waterbury, James Jett, Fengbo Li, Larry E Freil, Xiao Xiong, Lan Wang, Blacki L R Migliozzi, Eli Hershkovits,[...]. Faraday Discuss 2014
59
33



The archaeal 'TACK' superphylum and the origin of eukaryotes.
Lionel Guy, Thijs J G Ettema. Trends Microbiol 2011
175
33

Secondary structures of rRNAs from all three domains of life.
Anton S Petrov, Chad R Bernier, Burak Gulen, Chris C Waterbury, Eli Hershkovits, Chiaolong Hsiao, Stephen C Harvey, Nicholas V Hud, George E Fox, Roger M Wartell,[...]. PLoS One 2014
63
33

Secondary structure model for bacterial 16S ribosomal RNA: phylogenetic, enzymatic and chemical evidence.
C R Woese, L J Magrum, R Gupta, R B Siegel, D A Stahl, J Kop, N Crawford, J Brosius, R Gutell, J J Hogan,[...]. Nucleic Acids Res 1980
268
33

Initiation of mRNA translation in prokaryotes.
C O Gualerzi, C L Pon. Biochemistry 1990
405
33

Symmetry at the active site of the ribosome: structural and functional implications.
Ilana Agmon, Anat Bashan, Raz Zarivach, Ada Yonath. Biol Chem 2005
58
33

A new system for naming ribosomal proteins.
Nenad Ban, Roland Beckmann, Jamie H D Cate, Jonathan D Dinman, François Dragon, Steven R Ellis, Denis L J Lafontaine, Lasse Lindahl, Anders Liljas, Jeffrey M Lipton,[...]. Curr Opin Struct Biol 2014
322
33


Profusion of G-quadruplexes on both subunits of metazoan ribosomes.
Santi Mestre-Fos, Petar I Penev, John Colin Richards, William L Dean, Robert D Gray, Jonathan B Chaires, Loren Dean Williams. PLoS One 2019
8
33

Sequence analysis of 28S ribosomal DNA from the amphibian Xenopus laevis.
V C Ware, B W Tague, C G Clark, R L Gourse, R C Brand, S A Gerbi. Nucleic Acids Res 1983
150
33

Molecular paleontology: a biochemical model of the ancestral ribosome.
Chiaolong Hsiao, Timothy K Lenz, Jessica K Peters, Po-Yu Fang, Dana M Schneider, Eric J Anderson, Thanawadee Preeprem, Jessica C Bowman, Eric B O'Neill, Lively Lie,[...]. Nucleic Acids Res 2013
28
33

Secondary structure model for 23S ribosomal RNA.
H F Noller, J Kop, V Wheaton, J Brosius, R R Gutell, A M Kopylov, F Dohme, W Herr, D A Stahl, R Gupta,[...]. Nucleic Acids Res 1981
317
33


Molecular signatures of ribosomal evolution.
Elijah Roberts, Anurag Sethi, Jonathan Montoya, Carl R Woese, Zaida Luthey-Schulten. Proc Natl Acad Sci U S A 2008
74
33




One core, two shells: bacterial and eukaryotic ribosomes.
Sergey Melnikov, Adam Ben-Shem, Nicolas Garreau de Loubresse, Lasse Jenner, Gulnara Yusupova, Marat Yusupov. Nat Struct Mol Biol 2012
225
33

Evolution of the ribosome at atomic resolution.
Anton S Petrov, Chad R Bernier, Chiaolong Hsiao, Ashlyn M Norris, Nicholas A Kovacs, Chris C Waterbury, Victor G Stepanov, Stephen C Harvey, George E Fox, Roger M Wartell,[...]. Proc Natl Acad Sci U S A 2014
93
33

A hierarchical model for evolution of 23S ribosomal RNA.
Konstantin Bokov, Sergey V Steinberg. Nature 2009
134
33

A new view of the tree of life.
Laura A Hug, Brett J Baker, Karthik Anantharaman, Christopher T Brown, Alexander J Probst, Cindy J Castelle, Cristina N Butterfield, Alex W Hernsdorf, Yuki Amano, Kotaro Ise,[...]. Nat Microbiol 2016
776
33

Isolation of an archaeon at the prokaryote-eukaryote interface.
Hiroyuki Imachi, Masaru K Nobu, Nozomi Nakahara, Yuki Morono, Miyuki Ogawara, Yoshihiro Takaki, Yoshinori Takano, Katsuyuki Uematsu, Tetsuro Ikuta, Motoo Ito,[...]. Nature 2020
137
33

Revising the Structural Diversity of Ribosomal Proteins Across the Three Domains of Life.
Sergey Melnikov, Kasidet Manakongtreecheep, Dieter Söll. Mol Biol Evol 2018
32
33

Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale.
Odile Lecompte, Raymond Ripp, Jean-Claude Thierry, Dino Moras, Olivier Poch. Nucleic Acids Res 2002
225
33

Root of the Tree: The Significance, Evolution, and Origins of the Ribosome.
Jessica C Bowman, Anton S Petrov, Moran Frenkel-Pinter, Petar I Penev, Loren Dean Williams. Chem Rev 2020
32
33

Genomes of Asgard archaea encode profilins that regulate actin.
Caner Akıl, Robert C Robinson. Nature 2018
41
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.