A citation-based method for searching scientific literature

Salil Saurav Pathak, Dong Liu, Tianbao Li, Nuria de Zavalia, Lei Zhu, Jin Li, Ramanujam Karthikeyan, Tommy Alain, Andrew C Liu, Kai-Florian Storch, Randal J Kaufman, Victor X Jin, Shimon Amir, Nahum Sonenberg, Ruifeng Cao. Neuron 2019
Times Cited: 27







List of co-cited articles
171 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Circadian clock regulation of mRNA translation through eukaryotic elongation factor eEF-2.
Stephen Z Caster, Kathrina Castillo, Matthew S Sachs, Deborah Bell-Pedersen. Proc Natl Acad Sci U S A 2016
30
18


Circadian control of stress granules by oscillating EIF2α.
Ruiqi Wang, Xin Jiang, Puhua Bao, Meiling Qin, Jin Xu. Cell Death Dis 2019
14
28

Circadian clock-dependent and -independent rhythmic proteomes implement distinct diurnal functions in mouse liver.
Daniel Mauvoisin, Jingkui Wang, Céline Jouffe, Eva Martin, Florian Atger, Patrice Waridel, Manfredo Quadroni, Frédéric Gachon, Felix Naef. Proc Natl Acad Sci U S A 2014
208
14

Molecular architecture of the mammalian circadian clock.
Carrie L Partch, Carla B Green, Joseph S Takahashi. Trends Cell Biol 2014
760
14

The circadian clock coordinates ribosome biogenesis.
Céline Jouffe, Gaspard Cretenet, Laura Symul, Eva Martin, Florian Atger, Felix Naef, Frédéric Gachon. PLoS Biol 2013
178
14

Circadian Proteomic Analysis Uncovers Mechanisms of Post-Transcriptional Regulation in Metabolic Pathways.
Jennifer M Hurley, Meaghan S Jankowski, Hannah De Los Santos, Alexander M Crowell, Samuel B Fordyce, Jeremy D Zucker, Neeraj Kumar, Samuel O Purvine, Errol W Robinson, Anil Shukla,[...]. Cell Syst 2018
44
14

Transcriptional architecture and chromatin landscape of the core circadian clock in mammals.
Nobuya Koike, Seung-Hee Yoo, Hung-Chung Huang, Vivek Kumar, Choogon Lee, Tae-Kyung Kim, Joseph S Takahashi. Science 2012
885
14

The Circadian Protein BMAL1 Regulates Translation in Response to S6K1-Mediated Phosphorylation.
Jonathan O Lipton, Elizabeth D Yuan, Lara M Boyle, Darius Ebrahimi-Fakhari, Erica Kwiatkowski, Ashwin Nathan, Thomas Güttler, Fred Davis, John M Asara, Mustafa Sahin. Cell 2015
204
14


ER-stress-induced transcriptional regulation increases protein synthesis leading to cell death.
Jaeseok Han, Sung Hoon Back, Junguk Hur, Yu-Hsuan Lin, Robert Gildersleeve, Jixiu Shan, Celvie L Yuan, Dawid Krokowski, Shiyu Wang, Maria Hatzoglou,[...]. Nat Cell Biol 2013
14

Circadian clock control of eIF2α phosphorylation is necessary for rhythmic translation initiation.
Shanta Karki, Kathrina Castillo, Zhaolan Ding, Olivia Kerr, Teresa M Lamb, Cheng Wu, Matthew S Sachs, Deborah Bell-Pedersen. Proc Natl Acad Sci U S A 2020
14
28

Progesterone Receptor Attenuates STAT1-Mediated IFN Signaling in Breast Cancer.
Merit L Goodman, Gloria M Trinca, Katherine R Walter, Evangelia K Papachristou, Clive S D'Santos, Tianbao Li, Qi Liu, Zhao Lai, Prabhakar Chalise, Rashna Madan,[...]. J Immunol 2019
21
19


Regulated translation initiation controls stress-induced gene expression in mammalian cells.
H P Harding, I Novoa, Y Zhang, H Zeng, R Wek, M Schapira, D Ron. Mol Cell 2000
14

ATF4 is an oxidative stress-inducible, prodeath transcription factor in neurons in vitro and in vivo.
Philipp S Lange, Juan C Chavez, John T Pinto, Giovanni Coppola, Chiao-Wang Sun, Tim M Townes, Daniel H Geschwind, Rajiv R Ratan. J Exp Med 2008
182
11

RNA-methylation-dependent RNA processing controls the speed of the circadian clock.
Jean-Michel Fustin, Masao Doi, Yoshiaki Yamaguchi, Hayashi Hida, Shinichi Nishimura, Minoru Yoshida, Takayuki Isagawa, Masaki Suimye Morioka, Hideaki Kakeya, Ichiro Manabe,[...]. Cell 2013
601
11

A circadian gene expression atlas in mammals: implications for biology and medicine.
Ray Zhang, Nicholas F Lahens, Heather I Ballance, Michael E Hughes, John B Hogenesch. Proc Natl Acad Sci U S A 2014
11

Nascent-Seq reveals novel features of mouse circadian transcriptional regulation.
Jerome S Menet, Joseph Rodriguez, Katharine C Abruzzi, Michael Rosbash. Elife 2012
228
11

Circadian orchestration of the hepatic proteome.
Akhilesh B Reddy, Natasha A Karp, Elizabeth S Maywood, Elizabeth A Sage, Michael Deery, John S O'Neill, Gabriel K Y Wong, Jo Chesham, Mark Odell, Kathryn S Lilley,[...]. Curr Biol 2006
400
11

Reinitiation involving upstream ORFs regulates ATF4 mRNA translation in mammalian cells.
Krishna M Vattem, Ronald C Wek. Proc Natl Acad Sci U S A 2004
11


Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
11

mTOR Signaling in Growth, Metabolism, and Disease.
Robert A Saxton, David M Sabatini. Cell 2017
11

The mechanism of eukaryotic translation initiation and principles of its regulation.
Richard J Jackson, Christopher U T Hellen, Tatyana V Pestova. Nat Rev Mol Cell Biol 2010
11

Noncanonical Modulation of the eIF2 Pathway Controls an Increase in Local Translation during Neural Wiring.
Roberta Cagnetta, Hovy Ho-Wai Wong, Christian K Frese, Giovanna R Mallucci, Jeroen Krijgsveld, Christine E Holt. Mol Cell 2019
45
11

The integrated stress response.
Karolina Pakos-Zebrucka, Izabela Koryga, Katarzyna Mnich, Mila Ljujic, Afshin Samali, Adrienne M Gorman. EMBO Rep 2016
997
11

The integrated stress response: From mechanism to disease.
Mauro Costa-Mattioli, Peter Walter. Science 2020
308
11

Light-regulated translational control of circadian behavior by eIF4E phosphorylation.
Ruifeng Cao, Christos G Gkogkas, Nuria de Zavalia, Ian D Blum, Akiko Yanagiya, Yoshinori Tsukumo, Haiyan Xu, Choogon Lee, Kai-Florian Storch, Andrew C Liu,[...]. Nat Neurosci 2015
52
11

clusterProfiler: an R package for comparing biological themes among gene clusters.
Guangchuang Yu, Li-Gen Wang, Yanyan Han, Qing-Yu He. OMICS 2012
11

Increased expression of TRIP13 drives the tumorigenesis of bladder cancer in association with the EGFR signaling pathway.
Yanjun Gao, Shanhui Liu, Qi Guo, Su Zhang, Youli Zhao, Hanzhang Wang, Tianbao Li, Yuwen Gong, Yuhan Wang, Tao Zhang,[...]. Int J Biol Sci 2019
14
21

Specific dephosphorylation of Janus Kinase 2 by protein tyrosine phosphatases.
Jianzhuo Li, Xidong Liu, Huiying Chu, Xueqi Fu, Tianbao Li, Lianghai Hu, Shu Xing, Guohui Li, Jingkai Gu, Zhizhuang Joe Zhao. Proteomics 2015
9
33

An integrated stress response regulates amino acid metabolism and resistance to oxidative stress.
Heather P Harding, Yuhong Zhang, Huiquing Zeng, Isabel Novoa, Phoebe D Lu, Marcella Calfon, Navid Sadri, Chi Yun, Brian Popko, Richard Paules,[...]. Mol Cell 2003
11

ISRIB Blunts the Integrated Stress Response by Allosterically Antagonising the Inhibitory Effect of Phosphorylated eIF2 on eIF2B.
Alisa F Zyryanova, Kazuhiro Kashiwagi, Claudia Rato, Heather P Harding, Ana Crespillo-Casado, Luke A Perera, Ayako Sakamoto, Madoka Nishimoto, Mayumi Yonemochi, Mikako Shirouzu,[...]. Mol Cell 2021
36
11

Regulation of lipid peroxidation and ferroptosis in diverse species.
Marcus Conrad, Valerian E Kagan, Hülya Bayir, Gabriela C Pagnussat, Brian Head, Maret G Traber, Brent R Stockwell. Genes Dev 2018
191
7

Histone serotonylation is a permissive modification that enhances TFIID binding to H3K4me3.
Lorna A Farrelly, Robert E Thompson, Shuai Zhao, Ashley E Lepack, Yang Lyu, Natarajan V Bhanu, Baichao Zhang, Yong-Hwee E Loh, Aarthi Ramakrishnan, Krishna C Vadodaria,[...]. Nature 2019
158
7

Glutathione peroxidase 4 senses and translates oxidative stress into 12/15-lipoxygenase dependent- and AIF-mediated cell death.
Alexander Seiler, Manuela Schneider, Heidi Förster, Stephan Roth, Eva K Wirth, Carsten Culmsee, Nikolaus Plesnila, Elisabeth Kremmer, Olof Rådmark, Wolfgang Wurst,[...]. Cell Metab 2008
702
7

Oxytosis: A novel form of programmed cell death.
S Tan, D Schubert, P Maher. Curr Top Med Chem 2001
332
7


The role of iron in brain ageing and neurodegenerative disorders.
Roberta J Ward, Fabio A Zucca, Jeff H Duyn, Robert R Crichton, Luigi Zecca. Lancet Neurol 2014
780
7

Role of GCN2-Independent Signaling Through a Noncanonical PERK/NRF2 Pathway in the Physiological Responses to Dietary Methionine Restriction.
Desiree Wanders, Kirsten P Stone, Laura A Forney, Cory C Cortez, Kelly N Dille, Jacob Simon, Mark Xu, Elisabeth C Hotard, Inna A Nikonorova, Ashley P Pettit,[...]. Diabetes 2016
94
7


Hypoxia-inducible factor prolyl 4-hydroxylase inhibition. A target for neuroprotection in the central nervous system.
Ambreena Siddiq, Issam A Ayoub, Juan C Chavez, Leila Aminova, Sapan Shah, Joseph C LaManna, Stephanie M Patton, James R Connor, Robert A Cherny, Irene Volitakis,[...]. J Biol Chem 2005
241
7

Controlled enzymatic production of astrocytic hydrogen peroxide protects neurons from oxidative stress via an Nrf2-independent pathway.
Renée E Haskew-Layton, Jimmy B Payappilly, Natalya A Smirnova, Thong C Ma, Kelvin K Chan, Timothy H Murphy, Hengchang Guo, Brett Langley, Rukhsana Sultana, D Allan Butterfield,[...]. Proc Natl Acad Sci U S A 2010
103
7

TRB3, a novel ER stress-inducible gene, is induced via ATF4-CHOP pathway and is involved in cell death.
Nobumichi Ohoka, Satoshi Yoshii, Takayuki Hattori, Kikuo Onozaki, Hidetoshi Hayashi. EMBO J 2005
713
7

PEBP1 Wardens Ferroptosis by Enabling Lipoxygenase Generation of Lipid Death Signals.
Sally E Wenzel, Yulia Y Tyurina, Jinming Zhao, Claudette M St Croix, Haider H Dar, Gaowei Mao, Vladimir A Tyurin, Tamil S Anthonymuthu, Alexandr A Kapralov, Andrew A Amoscato,[...]. Cell 2017
365
7

Inhibition of neuronal ferroptosis protects hemorrhagic brain.
Qian Li, Xiaoning Han, Xi Lan, Yufeng Gao, Jieru Wan, Frederick Durham, Tian Cheng, Jie Yang, Zhongyu Wang, Chao Jiang,[...]. JCI Insight 2017
319
7


Ectopic expression of CHOP (GADD153) induces apoptosis in M1 myeloblastic leukemia cells.
M Matsumoto, M Minami, K Takeda, Y Sakao, S Akira. FEBS Lett 1996
263
7

Ferroptosis: an iron-dependent form of nonapoptotic cell death.
Scott J Dixon, Kathryn M Lemberg, Michael R Lamprecht, Rachid Skouta, Eleina M Zaitsev, Caroline E Gleason, Darpan N Patel, Andras J Bauer, Alexandra M Cantley, Wan Seok Yang,[...]. Cell 2012
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.