A citation-based method for searching scientific literature

Kimberley N Babos, Kate E Galloway, Kassandra Kisler, Madison Zitting, Yichen Li, Yingxiao Shi, Brooke Quintino, Robert H Chow, Berislav V Zlokovic, Justin K Ichida. Cell Stem Cell 2019
Times Cited: 17







List of co-cited articles
93 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Nonstochastic reprogramming from a privileged somatic cell state.
Shangqin Guo, Xiaoyuan Zi, Vincent P Schulz, Jijun Cheng, Mei Zhong, Sebastian H J Koochaki, Cynthia M Megyola, Xinghua Pan, Kartoosh Heydari, Sherman M Weissman,[...]. Cell 2014
115
23

RNA velocity of single cells.
Gioele La Manno, Ruslan Soldatov, Amit Zeisel, Emelie Braun, Hannah Hochgerner, Viktor Petukhov, Katja Lidschreiber, Maria E Kastriti, Peter Lönnerberg, Alessandro Furlan,[...]. Nature 2018
732
23

Direct conversion of fibroblasts to functional neurons by defined factors.
Thomas Vierbuchen, Austin Ostermeier, Zhiping P Pang, Yuko Kokubu, Thomas C Südhof, Marius Wernig. Nature 2010
23

Visualizing spatiotemporal dynamics of multicellular cell-cycle progression.
Asako Sakaue-Sawano, Hiroshi Kurokawa, Toshifumi Morimura, Aki Hanyu, Hiroshi Hama, Hatsuki Osawa, Saori Kashiwagi, Kiyoko Fukami, Takaki Miyata, Hiroyuki Miyoshi,[...]. Cell 2008
17

Conversion of mouse and human fibroblasts into functional spinal motor neurons.
Esther Y Son, Justin K Ichida, Brian J Wainger, Jeremy S Toma, Victor F Rafuse, Clifford J Woolf, Kevin Eggan. Cell Stem Cell 2011
451
17

Software tools for single-cell tracking and quantification of cellular and molecular properties.
Oliver Hilsenbeck, Michael Schwarzfischer, Stavroula Skylaki, Bernhard Schauberger, Philipp S Hoppe, Dirk Loeffler, Konstantinos D Kokkaliaris, Simon Hastreiter, Eleni Skylaki, Adam Filipczyk,[...]. Nat Biotechnol 2016
89
17

Single-cell mapping of lineage and identity in direct reprogramming.
Brent A Biddy, Wenjun Kong, Kenji Kamimoto, Chuner Guo, Sarah E Waye, Tao Sun, Samantha A Morris. Nature 2018
94
17

Hierarchical mechanisms for direct reprogramming of fibroblasts to neurons.
Orly L Wapinski, Thomas Vierbuchen, Kun Qu, Qian Yi Lee, Soham Chanda, Daniel R Fuentes, Paul G Giresi, Yi Han Ng, Samuele Marro, Norma F Neff,[...]. Cell 2013
344
17

Dissecting direct reprogramming from fibroblast to neuron using single-cell RNA-seq.
Barbara Treutlein, Qian Yi Lee, J Gray Camp, Moritz Mall, Winston Koh, Seyed Ali Mohammad Shariati, Sopheak Sim, Norma F Neff, Jan M Skotheim, Marius Wernig,[...]. Nature 2016
212
17

Directly Reprogrammed Human Neurons Retain Aging-Associated Transcriptomic Signatures and Reveal Age-Related Nucleocytoplasmic Defects.
Jerome Mertens, Apuã C M Paquola, Manching Ku, Emily Hatch, Lena Böhnke, Shauheen Ladjevardi, Sean McGrath, Benjamin Campbell, Hyungjun Lee, Joseph R Herdy,[...]. Cell Stem Cell 2015
344
17

DNA synthesis is required for reprogramming mediated by stem cell fusion.
Tomomi Tsubouchi, Jorge Soza-Ried, Karen Brown, Francesco M Piccolo, Irene Cantone, David Landeira, Hakan Bagci, Helfrid Hochegger, Matthias Merkenschlager, Amanda G Fisher. Cell 2013
57
11

Cell cycle control across the eukaryotic kingdom.
Hirofumi Harashima, Nico Dissmeyer, Arp Schnittger. Trends Cell Biol 2013
192
11

Neural stem and progenitor cells shorten S-phase on commitment to neuron production.
Yoko Arai, Jeremy N Pulvers, Christiane Haffner, Britta Schilling, Ina Nüsslein, Federico Calegari, Wieland B Huttner. Nat Commun 2011
240
11


Positive feedback between PU.1 and the cell cycle controls myeloid differentiation.
Hao Yuan Kueh, Ameya Champhekar, Stephen L Nutt, Michael B Elowitz, Ellen V Rothenberg. Science 2013
172
11

Prolonged Mitosis of Neural Progenitors Alters Cell Fate in the Developing Brain.
Louis-Jan Pilaz, John J McMahon, Emily E Miller, Ashley L Lennox, Aussie Suzuki, Edward Salmon, Debra L Silver. Neuron 2016
98
11

The Molecular Signature of Megakaryocyte-Erythroid Progenitors Reveals a Role for the Cell Cycle in Fate Specification.
Yi-Chien Lu, Chad Sanada, Juliana Xavier-Ferrucio, Lin Wang, Ping-Xia Zhang, H Leighton Grimes, Meenakshi Venkatasubramanian, Kashish Chetal, Bruce Aronow, Nathan Salomonis,[...]. Cell Rep 2018
20
11

Positive Feedback Keeps Duration of Mitosis Temporally Insulated from Upstream Cell-Cycle Events.
Ana Rita Araujo, Lendert Gelens, Rahuman S M Sheriff, Silvia D M Santos. Mol Cell 2016
37
11

A molecular roadmap of reprogramming somatic cells into iPS cells.
Jose M Polo, Endre Anderssen, Ryan M Walsh, Benjamin A Schwarz, Christian M Nefzger, Sue Mei Lim, Marti Borkent, Effie Apostolou, Sara Alaei, Jennifer Cloutier,[...]. Cell 2012
547
11

TIMING OF DNA SYNTHESIS IN THE MITOTIC CYCLE IN VITRO.
J E Sisken, R Kinosita. J Biophys Biochem Cytol 1961
82
11


Non-canonical functions of cell cycle cyclins and cyclin-dependent kinases.
Per Hydbring, Marcos Malumbres, Piotr Sicinski. Nat Rev Mol Cell Biol 2016
237
11

A more efficient method to generate integration-free human iPS cells.
Keisuke Okita, Yasuko Matsumura, Yoshiko Sato, Aki Okada, Asuka Morizane, Satoshi Okamoto, Hyenjong Hong, Masato Nakagawa, Koji Tanabe, Ken-ichi Tezuka,[...]. Nat Methods 2011
11

Genome-wide maps of nuclear lamina interactions in single human cells.
Jop Kind, Ludo Pagie, Sandra S de Vries, Leila Nahidiazar, Siddharth S Dey, Magda Bienko, Ye Zhan, Bryan Lajoie, Carolyn A de Graaf, Mario Amendola,[...]. Cell 2015
225
11

Suppression of induced pluripotent stem cell generation by the p53-p21 pathway.
Hyenjong Hong, Kazutoshi Takahashi, Tomoko Ichisaka, Takashi Aoi, Osami Kanagawa, Masato Nakagawa, Keisuke Okita, Shinya Yamanaka. Nature 2009
961
11

The cell cycle: a review of regulation, deregulation and therapeutic targets in cancer.
Katrien Vermeulen, Dirk R Van Bockstaele, Zwi N Berneman. Cell Prolif 2003
995
11

Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions.
Lars Guelen, Ludo Pagie, Emilie Brasset, Wouter Meuleman, Marius B Faza, Wendy Talhout, Bert H Eussen, Annelies de Klein, Lodewyk Wessels, Wouter de Laat,[...]. Nature 2008
11

Global increase in replication fork speed during a p57KIP2-regulated erythroid cell fate switch.
Yung Hwang, Melinda Futran, Daniel Hidalgo, Ramona Pop, Divya Ramalingam Iyer, Ralph Scully, Nicholas Rhind, Merav Socolovsky. Sci Adv 2017
21
11


The proliferation-quiescence decision is controlled by a bifurcation in CDK2 activity at mitotic exit.
Sabrina L Spencer, Steven D Cappell, Feng-Chiao Tsai, K Wesley Overton, Clifford L Wang, Tobias Meyer. Cell 2013
307
11

Proteome half-life dynamics in living human cells.
Eran Eden, Naama Geva-Zatorsky, Irina Issaeva, Ariel Cohen, Erez Dekel, Tamar Danon, Lydia Cohen, Avi Mayo, Uri Alon. Science 2011
201
11

Dppa2/4 Facilitate Epigenetic Remodeling during Reprogramming to Pluripotency.
Charles Hernandez, Zheng Wang, Bulat Ramazanov, Yin Tang, Sameet Mehta, Cheryl Dambrot, Yu-Wei Lee, Kaleab Tessema, Ishan Kumar, Michael Astudillo,[...]. Cell Stem Cell 2018
33
11

Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
11

Cell cycle dynamics in the reprogramming of cellular identity.
Xiao Hu, Anna E Eastman, Shangqin Guo. FEBS Lett 2019
9
22

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
11

Deep learning for cellular image analysis.
Erick Moen, Dylan Bannon, Takamasa Kudo, William Graf, Markus Covert, David Van Valen. Nat Methods 2019
196
11

Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming.
Ralph Stadhouders, Enrique Vidal, François Serra, Bruno Di Stefano, François Le Dily, Javier Quilez, Antonio Gomez, Samuel Collombet, Clara Berenguer, Yasmina Cuartero,[...]. Nat Genet 2018
141
11

Histone H3K27ac separates active from poised enhancers and predicts developmental state.
Menno P Creyghton, Albert W Cheng, G Grant Welstead, Tristan Kooistra, Bryce W Carey, Eveline J Steine, Jacob Hanna, Michael A Lodato, Garrett M Frampton, Phillip A Sharp,[...]. Proc Natl Acad Sci U S A 2010
11

Generation of inner ear sensory epithelia from pluripotent stem cells in 3D culture.
Karl R Koehler, Andrew M Mikosz, Andrei I Molosh, Dharmeshkumar Patel, Eri Hashino. Nature 2013
209
11

Six1 is essential for differentiation and patterning of the mammalian auditory sensory epithelium.
Ting Zhang, Jinshu Xu, Pascal Maire, Pin-Xian Xu. PLoS Genet 2017
22
11


Inner ear hair cell-like cells from human embryonic stem cells.
Mohammad Ronaghi, Marjan Nasr, Megan Ealy, Robert Durruthy-Durruthy, Joerg Waldhaus, Giovanni H Diaz, Lydia-Marie Joubert, Kazuo Oshima, Stefan Heller. Stem Cells Dev 2014
57
11

Spontaneous hair cell regeneration in the neonatal mouse cochlea in vivo.
Brandon C Cox, Renjie Chai, Anne Lenoir, Zhiyong Liu, LingLi Zhang, Duc-Huy Nguyen, Kavita Chalasani, Katherine A Steigelman, Jie Fang, Edwin W Rubel,[...]. Development 2014
172
11

Mechanosensitive hair cell-like cells from embryonic and induced pluripotent stem cells.
Kazuo Oshima, Kunyoo Shin, Marc Diensthuber, Anthony W Peng, Anthony J Ricci, Stefan Heller. Cell 2010
195
11

Sound strategies for hearing restoration.
Gwenaëlle S G Géléoc, Jeffrey R Holt. Science 2014
133
11

Notch inhibition induces cochlear hair cell regeneration and recovery of hearing after acoustic trauma.
Kunio Mizutari, Masato Fujioka, Makoto Hosoya, Naomi Bramhall, Hirotaka James Okano, Hideyuki Okano, Albert S B Edge. Neuron 2013
236
11

Induction of pluripotent stem cells from adult human fibroblasts by defined factors.
Kazutoshi Takahashi, Koji Tanabe, Mari Ohnuki, Megumi Narita, Tomoko Ichisaka, Kiichiro Tomoda, Shinya Yamanaka. Cell 2007
11

AAV-ie enables safe and efficient gene transfer to inner ear cells.
Fangzhi Tan, Cenfeng Chu, Jieyu Qi, Wenyan Li, Dan You, Ke Li, Xin Chen, Weidong Zhao, Cheng Cheng, Xiaoyi Liu,[...]. Nat Commun 2019
66
11

In vivo generation of immature inner hair cells in neonatal mouse cochleae by ectopic Atoh1 expression.
Zhiyong Liu, Jie Fang, Jennifer Dearman, Lingli Zhang, Jian Zuo. PLoS One 2014
62
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.