A citation-based method for searching scientific literature

Fabian F Voigt, Daniel Kirschenbaum, Evgenia Platonova, Stéphane Pagès, Robert A A Campbell, Rahel Kastli, Martina Schaettin, Ladan Egolf, Alexander van der Bourg, Philipp Bethge, Karen Haenraets, Noémie Frézel, Thomas Topilko, Paola Perin, Daniel Hillier, Sven Hildebrand, Anna Schueth, Alard Roebroeck, Botond Roska, Esther T Stoeckli, Roberto Pizzala, Nicolas Renier, Hanns Ulrich Zeilhofer, Theofanis Karayannis, Urs Ziegler, Laura Batti, Anthony Holtmaat, Christian Lüscher, Adriano Aguzzi, Fritjof Helmchen. Nat Methods 2019
Times Cited: 57







List of co-cited articles
444 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain.
Hans-Ulrich Dodt, Ulrich Leischner, Anja Schierloh, Nina Jährling, Christoph Peter Mauch, Katrin Deininger, Jan Michael Deussing, Matthias Eder, Walter Zieglgänsberger, Klaus Becker. Nat Methods 2007
707
40

Optical sectioning deep inside live embryos by selective plane illumination microscopy.
Jan Huisken, Jim Swoger, Filippo Del Bene, Joachim Wittbrodt, Ernst H K Stelzer. Science 2004
36

Advanced CLARITY for rapid and high-resolution imaging of intact tissues.
Raju Tomer, Li Ye, Brian Hsueh, Karl Deisseroth. Nat Protoc 2014
478
36

Structural and molecular interrogation of intact biological systems.
Kwanghun Chung, Jenelle Wallace, Sung-Yon Kim, Sandhiya Kalyanasundaram, Aaron S Andalman, Thomas J Davidson, Julie J Mirzabekov, Kelly A Zalocusky, Joanna Mattis, Aleksandra K Denisin,[...]. Nature 2013
35

Light-sheet microscopy of cleared tissues with isotropic, subcellular resolution.
Tonmoy Chakraborty, Meghan K Driscoll, Elise Jeffery, Malea M Murphy, Philippe Roudot, Bo-Jui Chang, Saumya Vora, Wen Mai Wong, Cara D Nielson, Hua Zhang,[...]. Nat Methods 2019
54
33

Three-dimensional imaging of solvent-cleared organs using 3DISCO.
Ali Ertürk, Klaus Becker, Nina Jährling, Christoph P Mauch, Caroline D Hojer, Jackson G Egen, Farida Hellal, Frank Bradke, Morgan Sheng, Hans-Ulrich Dodt. Nat Protoc 2012
545
28

Mapping of Brain Activity by Automated Volume Analysis of Immediate Early Genes.
Nicolas Renier, Eliza L Adams, Christoph Kirst, Zhuhao Wu, Ricardo Azevedo, Johannes Kohl, Anita E Autry, Lolahon Kadiri, Kannan Umadevi Venkataraju, Yu Zhou,[...]. Cell 2016
319
26

Clarifying Tissue Clearing.
Douglas S Richardson, Jeff W Lichtman. Cell 2015
580
24

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
24

BigStitcher: reconstructing high-resolution image datasets of cleared and expanded samples.
David Hörl, Fabio Rojas Rusak, Friedrich Preusser, Paul Tillberg, Nadine Randel, Raghav K Chhetri, Albert Cardona, Philipp J Keller, Hartmann Harz, Heinrich Leonhardt,[...]. Nat Methods 2019
78
24

iDISCO: a simple, rapid method to immunolabel large tissue samples for volume imaging.
Nicolas Renier, Zhuhao Wu, David J Simon, Jing Yang, Pablo Ariel, Marc Tessier-Lavigne. Cell 2014
698
24

Shrinkage-mediated imaging of entire organs and organisms using uDISCO.
Chenchen Pan, Ruiyao Cai, Francesca Paola Quacquarelli, Alireza Ghasemigharagoz, Athanasios Lourbopoulos, Paweł Matryba, Nikolaus Plesnila, Martin Dichgans, Farida Hellal, Ali Ertürk. Nat Methods 2016
292
24

Tissue clearing and its applications in neuroscience.
Hiroki R Ueda, Ali Ertürk, Kwanghun Chung, Viviana Gradinaru, Alain Chédotal, Pavel Tomancak, Philipp J Keller. Nat Rev Neurosci 2020
146
24


Deconvolution-free Subcellular Imaging with Axially Swept Light Sheet Microscopy.
Kevin M Dean, Philippe Roudot, Erik S Welf, Gaudenz Danuser, Reto Fiolka. Biophys J 2015
79
22

Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis.
Etsuo A Susaki, Kazuki Tainaka, Dimitri Perrin, Fumiaki Kishino, Takehiro Tawara, Tomonobu M Watanabe, Chihiro Yokoyama, Hirotaka Onoe, Megumi Eguchi, Shun Yamaguchi,[...]. Cell 2014
666
22

Lattice light-sheet microscopy: imaging molecules to embryos at high spatiotemporal resolution.
Bi-Chang Chen, Wesley R Legant, Kai Wang, Lin Shao, Daniel E Milkie, Michael W Davidson, Chris Janetopoulos, Xufeng S Wu, John A Hammer, Zhe Liu,[...]. Science 2014
859
21

Tissue clearing of both hard and soft tissue organs with the PEGASOS method.
Dian Jing, Shiwen Zhang, Wenjing Luo, Xiaofei Gao, Yi Men, Chi Ma, Xiaohua Liu, Yating Yi, Abhijit Bugde, Bo O Zhou,[...]. Cell Res 2018
126
21

Mapping the Fine-Scale Organization and Plasticity of the Brain Vasculature.
Christoph Kirst, Sophie Skriabine, Alba Vieites-Prado, Thomas Topilko, Paul Bertin, Gaspard Gerschenfeld, Florine Verny, Piotr Topilko, Nicolas Michalski, Marc Tessier-Lavigne,[...]. Cell 2020
68
21

Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy.
Philipp J Keller, Annette D Schmidt, Joachim Wittbrodt, Ernst H K Stelzer. Science 2008
831
19

Light sheet theta microscopy for rapid high-resolution imaging of large biological samples.
Bianca Migliori, Malika S Datta, Christophe Dupre, Mehmet C Apak, Shoh Asano, Ruixuan Gao, Edward S Boyden, Ola Hermanson, Rafael Yuste, Raju Tomer. BMC Biol 2018
41
26

Panoptic imaging of transparent mice reveals whole-body neuronal projections and skull-meninges connections.
Ruiyao Cai, Chenchen Pan, Alireza Ghasemigharagoz, Mihail Ivilinov Todorov, Benjamin Förstera, Shan Zhao, Harsharan S Bhatia, Arnaldo Parra-Damas, Leander Mrowka, Delphine Theodorou,[...]. Nat Neurosci 2019
144
19

A three-dimensional single-cell-resolution whole-brain atlas using CUBIC-X expansion microscopy and tissue clearing.
Tatsuya C Murakami, Tomoyuki Mano, Shu Saikawa, Shuhei A Horiguchi, Daichi Shigeta, Kousuke Baba, Hiroshi Sekiya, Yoshihiro Shimizu, Kenji F Tanaka, Hiroshi Kiyonari,[...]. Nat Neurosci 2018
117
19

Optical imaging. Expansion microscopy.
Fei Chen, Paul W Tillberg, Edward S Boyden. Science 2015
533
19

Protection of tissue physicochemical properties using polyfunctional crosslinkers.
Young-Gyun Park, Chang Ho Sohn, Ritchie Chen, Margaret McCue, Dae Hee Yun, Gabrielle T Drummond, Taeyun Ku, Nicholas B Evans, Hayeon Caitlyn Oak, Wendy Trieu,[...]. Nat Biotechnol 2018
93
19


Single-cell phenotyping within transparent intact tissue through whole-body clearing.
Bin Yang, Jennifer B Treweek, Rajan P Kulkarni, Benjamin E Deverman, Chun-Kan Chen, Eric Lubeck, Sheel Shah, Long Cai, Viviana Gradinaru. Cell 2014
550
19

Machine learning analysis of whole mouse brain vasculature.
Mihail Ivilinov Todorov, Johannes Christian Paetzold, Oliver Schoppe, Giles Tetteh, Suprosanna Shit, Velizar Efremov, Katalin Todorov-Völgyi, Marco Düring, Martin Dichgans, Marie Piraud,[...]. Nat Methods 2020
66
19

Stochastic electrotransport selectively enhances the transport of highly electromobile molecules.
Sung-Yon Kim, Jae Hun Cho, Evan Murray, Naveed Bakh, Heejin Choi, Kimberly Ohn, Luzdary Ruelas, Austin Hubbert, Meg McCue, Sara L Vassallo,[...]. Proc Natl Acad Sci U S A 2015
111
17

Whole-body imaging with single-cell resolution by tissue decolorization.
Kazuki Tainaka, Shimpei I Kubota, Takeru Q Suyama, Etsuo A Susaki, Dimitri Perrin, Maki Ukai-Tadenuma, Hideki Ukai, Hiroki R Ueda. Cell 2014
269
17

Multiplexed and scalable super-resolution imaging of three-dimensional protein localization in size-adjustable tissues.
Taeyun Ku, Justin Swaney, Jeong-Yoon Park, Alexandre Albanese, Evan Murray, Jae Hun Cho, Young-Gyun Park, Vamsi Mangena, Jiapei Chen, Kwanghun Chung. Nat Biotechnol 2016
173
17

ScaleS: an optical clearing palette for biological imaging.
Hiroshi Hama, Hiroyuki Hioki, Kana Namiki, Tetsushi Hoshida, Hiroshi Kurokawa, Fumiyoshi Ishidate, Takeshi Kaneko, Takumi Akagi, Takashi Saito, Takaomi Saido,[...]. Nat Neurosci 2015
306
17

Advanced CUBIC protocols for whole-brain and whole-body clearing and imaging.
Etsuo A Susaki, Kazuki Tainaka, Dimitri Perrin, Hiroko Yukinaga, Akihiro Kuno, Hiroki R Ueda. Nat Protoc 2015
320
17

Simple, Scalable Proteomic Imaging for High-Dimensional Profiling of Intact Systems.
Evan Murray, Jae Hun Cho, Daniel Goodwin, Taeyun Ku, Justin Swaney, Sung-Yon Kim, Heejin Choi, Young-Gyun Park, Jeong-Yoon Park, Austin Hubbert,[...]. Cell 2015
222
17

Cellular and Molecular Probing of Intact Human Organs.
Shan Zhao, Mihail Ivilinov Todorov, Ruiyao Cai, Rami Ai -Maskari, Hanno Steinke, Elisabeth Kemter, Hongcheng Mai, Zhouyi Rong, Martin Warmer, Karen Stanic,[...]. Cell 2020
79
17

Versatile whole-organ/body staining and imaging based on electrolyte-gel properties of biological tissues.
Etsuo A Susaki, Chika Shimizu, Akihiro Kuno, Kazuki Tainaka, Xiang Li, Kengo Nishi, Ken Morishima, Hiroaki Ono, Koji L Ode, Yuki Saeki,[...]. Nat Commun 2020
44
22

Whole-brain functional imaging at cellular resolution using light-sheet microscopy.
Misha B Ahrens, Michael B Orger, Drew N Robson, Jennifer M Li, Philipp J Keller. Nat Methods 2013
638
15

Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination.
Thomas A Planchon, Liang Gao, Daniel E Milkie, Michael W Davidson, James A Galbraith, Catherine G Galbraith, Eric Betzig. Nat Methods 2011
501
15

Three-Dimensional Study of Alzheimer's Disease Hallmarks Using the iDISCO Clearing Method.
Thomas Liebmann, Nicolas Renier, Karima Bettayeb, Paul Greengard, Marc Tessier-Lavigne, Marc Flajolet. Cell Rep 2016
91
15

Chemical Principles in Tissue Clearing and Staining Protocols for Whole-Body Cell Profiling.
Kazuki Tainaka, Akihiro Kuno, Shimpei I Kubota, Tatzya Murakami, Hiroki R Ueda. Annu Rev Cell Dev Biol 2016
144
15

Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain.
Hiroshi Hama, Hiroshi Kurokawa, Hiroyuki Kawano, Ryoko Ando, Tomomi Shimogori, Hisayori Noda, Kiyoko Fukami, Asako Sakaue-Sawano, Atsushi Miyawaki. Nat Neurosci 2011
740
15

High-resolution ultramicroscopy of the developing and adult nervous system in optically cleared Drosophila melanogaster.
Marko Pende, Klaus Becker, Martina Wanis, Saiedeh Saghafi, Rashmit Kaur, Christian Hahn, Nika Pende, Massih Foroughipour, Thomas Hummel, Hans-Ulrich Dodt. Nat Commun 2018
30
26

Fully Automated Evaluation of Total Glomerular Number and Capillary Tuft Size in Nephritic Kidneys Using Lightsheet Microscopy.
Anika Klingberg, Anja Hasenberg, Isis Ludwig-Portugall, Anna Medyukhina, Linda Männ, Alexandra Brenzel, Daniel R Engel, Marc Thilo Figge, Christian Kurts, Matthias Gunzer. J Am Soc Nephrol 2017
160
14

Chemical Landscape for Tissue Clearing Based on Hydrophilic Reagents.
Kazuki Tainaka, Tatsuya C Murakami, Etsuo A Susaki, Chika Shimizu, Rie Saito, Kei Takahashi, Akiko Hayashi-Takagi, Hiroshi Sekiya, Yasunobu Arima, Satoshi Nojima,[...]. Cell Rep 2018
102
14

Deep Learning Reveals Cancer Metastasis and Therapeutic Antibody Targeting in the Entire Body.
Chenchen Pan, Oliver Schoppe, Arnaldo Parra-Damas, Ruiyao Cai, Mihail Ivilinov Todorov, Gabor Gondi, Bettina von Neubeck, Nuray Böğürcü-Seidel, Sascha Seidel, Katia Sleiman,[...]. Cell 2019
65
14



Real-time volumetric microscopy of in vivo dynamics and large-scale samples with SCAPE 2.0.
Venkatakaushik Voleti, Kripa B Patel, Wenze Li, Citlali Perez Campos, Srinidhi Bharadwaj, Hang Yu, Caitlin Ford, Malte J Casper, Richard Wenwei Yan, Wenxuan Liang,[...]. Nat Methods 2019
68
12


Swept confocally-aligned planar excitation (SCAPE) microscopy for high speed volumetric imaging of behaving organisms.
Matthew B Bouchard, Venkatakaushik Voleti, César S Mendes, Clay Lacefield, Wesley B Grueber, Richard S Mann, Randy M Bruno, Elizabeth M C Hillman. Nat Photonics 2015
232
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.