A citation-based method for searching scientific literature

Ananda Kishore Mukherjee, Shalu Sharma, Sulochana Bagri, Rintu Kutum, Pankaj Kumar, Asgar Hussain, Prateek Singh, Dhurjhoti Saha, Anirban Kar, Debasis Dash, Shantanu Chowdhury. J Biol Chem 2019
Times Cited: 10







List of co-cited articles
113 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Telomere length-dependent transcription and epigenetic modifications in promoters remote from telomere ends.
Ananda Kishore Mukherjee, Shalu Sharma, Suman Sengupta, Dhurjhoti Saha, Pankaj Kumar, Tabish Hussain, Vivek Srivastava, Sumitabho Deb Roy, Jerry W Shay, Shantanu Chowdhury. PLoS Genet 2018
24
70

The effect of the TRF2 N-terminal and TRFH regions on telomeric G-quadruplex structures.
Ilene M Pedroso, William Hayward, Terace M Fletcher. Nucleic Acids Res 2009
36
60

The Telomeric Protein TRF2 Regulates Angiogenesis by Binding and Activating the PDGFRβ Promoter.
Mounir El Maï, Kay-Dietrich Wagner, Jean-François Michiels, Damien Ambrosetti, Arnaud Borderie, Sandrine Destree, Valerie Renault, Nadir Djerbi, Marie-Josèphe Giraud-Panis, Eric Gilson,[...]. Cell Rep 2014
48
40

The human TTAGGG repeat factors 1 and 2 bind to a subset of interstitial telomeric sequences and satellite repeats.
Thomas Simonet, Laure-Emmanuelle Zaragosi, Claude Philippe, Kevin Lebrigand, Clémentine Schouteden, Adeline Augereau, Serge Bauwens, Jing Ye, Marco Santagostino, Elena Giulotto,[...]. Cell Res 2011
90
40

Telomeres and telomerase: three decades of progress.
Jerry W Shay, Woodring E Wright. Nat Rev Genet 2019
171
40

Transcription regulation of CDKN1A (p21/CIP1/WAF1) by TRF2 is epigenetically controlled through the REST repressor complex.
Tabish Hussain, Dhurjhoti Saha, Gunjan Purohit, Anirban Kar, Anand Kishore Mukherjee, Shalu Sharma, Suman Sengupta, Parashar Dhapola, Basudeb Maji, Sreekanth Vedagopuram,[...]. Sci Rep 2017
26
40

Non-duplex G-Quadruplex Structures Emerge as Mediators of Epigenetic Modifications.
Ananda Kishore Mukherjee, Shalu Sharma, Shantanu Chowdhury. Trends Genet 2019
35
40

Epigenetic suppression of human telomerase (hTERT) is mediated by the metastasis suppressor NME2 in a G-quadruplex-dependent fashion.
Dhurjhoti Saha, Ankita Singh, Tabish Hussain, Vivek Srivastava, Suman Sengupta, Anirban Kar, Parashar Dhapola, Vishnu Dhople, Ramesh Ummanni, Shantanu Chowdhury. J Biol Chem 2017
27
40

Mammalian Rap1 controls telomere function and gene expression through binding to telomeric and extratelomeric sites.
Paula Martinez, Maria Thanasoula, Ana R Carlos, Gonzalo Gómez-López, Agueda M Tejera, Stefan Schoeftner, Orlando Dominguez, David G Pisano, Madalena Tarsounas, Maria A Blasco. Nat Cell Biol 2010
162
40


TRF2-Mediated Control of Telomere DNA Topology as a Mechanism for Chromosome-End Protection.
Delphine Benarroch-Popivker, Sabrina Pisano, Aaron Mendez-Bermudez, Liudmyla Lototska, Parminder Kaur, Serge Bauwens, Nadir Djerbi, Chrysa M Latrick, Vincent Fraisier, Bei Pei,[...]. Mol Cell 2016
79
40

A two-step mechanism for TRF2-mediated chromosome-end protection.
Keiji Okamoto, Cristina Bartocci, Iliana Ouzounov, Jolene K Diedrich, John R Yates, Eros Lazzerini Denchi. Nature 2013
137
30

Nontelomeric TRF2-REST interaction modulates neuronal gene silencing and fate of tumor and stem cells.
Peisu Zhang, Michael J Pazin, Catherine M Schwartz, Kevin G Becker, Robert P Wersto, Caroline M Dilley, Mark P Mattson. Curr Biol 2008
58
30

Shelterin-Mediated Telomere Protection.
Titia de Lange. Annu Rev Genet 2018
206
30

TRF2 inhibits a cell-extrinsic pathway through which natural killer cells eliminate cancer cells.
Annamaria Biroccio, Julien Cherfils-Vicini, Adeline Augereau, Sébastien Pinte, Serge Bauwens, Jing Ye, Thomas Simonet, Béatrice Horard, Karine Jamet, Ludovic Cervera,[...]. Nat Cell Biol 2013
78
30

TIN2 Functions with TPP1/POT1 To Stimulate Telomerase Processivity.
Alexandra M Pike, Margaret A Strong, John Paul T Ouyang, Carol W Greider. Mol Cell Biol 2019
18
30

QuadBase: genome-wide database of G4 DNA--occurrence and conservation in human, chimpanzee, mouse and rat promoters and 146 microbes.
Vinod Kumar Yadav, James Kappukalayil Abraham, Prithvi Mani, Rashi Kulshrestha, Shantanu Chowdhury. Nucleic Acids Res 2008
98
30

Control of human telomere length by TRF1 and TRF2.
A Smogorzewska, B van Steensel, A Bianchi, S Oelmann, M R Schaefer, G Schnapp, T de Lange. Mol Cell Biol 2000
564
30

Regulation of the Human Telomerase Gene TERT by Telomere Position Effect-Over Long Distances (TPE-OLD): Implications for Aging and Cancer.
Wanil Kim, Andrew T Ludlow, Jaewon Min, Jerome D Robin, Guido Stadler, Ilgen Mender, Tsung-Po Lai, Ning Zhang, Woodring E Wright, Jerry W Shay. PLoS Biol 2016
77
30

QuadBase2: web server for multiplexed guanine quadruplex mining and visualization.
Parashar Dhapola, Shantanu Chowdhury. Nucleic Acids Res 2016
49
30

TRF2 and lamin A/C interact to facilitate the functional organization of chromosome ends.
Ashley M Wood, Jannie M Rendtlew Danielsen, Catherine A Lucas, Ellen L Rice, David Scalzo, Takeshi Shimi, Robert D Goldman, Erica D Smith, Michelle M Le Beau, Steven T Kosak. Nat Commun 2014
76
30

Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation.
Pooja Rawal, Veera Bhadra Rao Kummarasetti, Jinoy Ravindran, Nirmal Kumar, Kangkan Halder, Rakesh Sharma, Mitali Mukerji, Swapan Kumar Das, Shantanu Chowdhury. Genome Res 2006
227
30

G-quadruplexes in promoters throughout the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2007
802
30

A novel form of the telomere-associated protein TIN2 localizes to the nuclear matrix.
Patrick G Kaminker, Sahn-Ho Kim, Pierre-Yves Desprez, Judith Campisi. Cell Cycle 2009
30
30


Genome-wide Control of Heterochromatin Replication by the Telomere Capping Protein TRF2.
Aaron Mendez-Bermudez, Liudmyla Lototska, Serge Bauwens, Marie-Josèphe Giraud-Panis, Olivier Croce, Karine Jamet, Agurtzane Irizar, Macarena Mowinckel, Stephane Koundrioukoff, Nicolas Nottet,[...]. Mol Cell 2018
26
30

Metastases suppressor NM23-H2 interaction with G-quadruplex DNA within c-MYC promoter nuclease hypersensitive element induces c-MYC expression.
Ram Krishna Thakur, Praveen Kumar, Kangkan Halder, Anjali Verma, Anirban Kar, Jean-Luc Parent, Richa Basundra, Akinchan Kumar, Shantanu Chowdhury. Nucleic Acids Res 2009
121
30

A Pharmacological Chaperone Molecule Induces Cancer Cell Death by Restoring Tertiary DNA Structures in Mutant hTERT Promoters.
Hyun-Jin Kang, Yunxi Cui, Holly Yin, Amy Scheid, William P D Hendricks, Jessica Schmidt, Aleksandar Sekulic, Deming Kong, Jeffrey M Trent, Vijay Gokhale,[...]. J Am Chem Soc 2016
48
30

TRF2 and apollo cooperate with topoisomerase 2alpha to protect human telomeres from replicative damage.
Jing Ye, Christelle Lenain, Serge Bauwens, Angela Rizzo, Adelaïde Saint-Léger, Anaïs Poulet, Delphine Benarroch, Frédérique Magdinier, Julia Morere, Simon Amiard,[...]. Cell 2010
124
30

Human telomeres contain two distinct Myb-related proteins, TRF1 and TRF2.
D Broccoli, A Smogorzewska, L Chong, T de Lange. Nat Genet 1997
710
30

TRF2 binds branched DNA to safeguard telomere integrity.
Isabelle Schmutz, Leonid Timashev, Wei Xie, Dinshaw J Patel, Titia de Lange. Nat Struct Mol Biol 2017
36
30

TRF2 protects human telomeres from end-to-end fusions.
B van Steensel, A Smogorzewska, T de Lange. Cell 1998
30

G-quadruplex structures mark human regulatory chromatin.
Robert Hänsel-Hertsch, Dario Beraldi, Stefanie V Lensing, Giovanni Marsico, Katherine Zyner, Aled Parry, Marco Di Antonio, Jeremy Pike, Hiroshi Kimura, Masashi Narita,[...]. Nat Genet 2016
318
20

Genetic and molecular identification of three human TPP1 functions in telomerase action: recruitment, activation, and homeostasis set point regulation.
Alec N Sexton, Samuel G Regalado, Christine S Lai, Gregory J Cost, Colleen M O'Neil, Fyodor D Urnov, Philip D Gregory, Rudolf Jaenisch, Kathleen Collins, Dirk Hockemeyer. Genes Dev 2014
75
20

Local epigenetic reprogramming induced by G-quadruplex ligands.
Guillaume Guilbaud, Pierre Murat, Bénédicte Recolin, Beth C Campbell, Ahmed Maiter, Julian E Sale, Shankar Balasubramanian. Nat Chem 2017
47
20

A genetic interaction between RAP1 and telomerase reveals an unanticipated role for RAP1 in telomere maintenance.
Paula Martínez, Gonzalo Gómez-López, David G Pisano, Juana M Flores, Maria A Blasco. Aging Cell 2016
27
20

Nontelomeric role for Rap1 in regulating metabolism and protecting against obesity.
Frank Yeung, Cristina M Ramírez, Pedro A Mateos-Gomez, Alexandra Pinzaru, Giovanni Ceccarini, Shaheen Kabir, Carlos Fernández-Hernando, Agnel Sfeir. Cell Rep 2013
56
20

Telomeres in cancer: tumour suppression and genome instability.
John Maciejowski, Titia de Lange. Nat Rev Mol Cell Biol 2017
254
20

Mammalian telomeres and their partnership with lamins.
Romina Burla, Mattia La Torre, Isabella Saggio. Nucleus 2016
24
20


Nontelomeric splice variant of telomere repeat-binding factor 2 maintains neuronal traits by sequestering repressor element 1-silencing transcription factor.
Peisu Zhang, Rebecca Casaday-Potts, Patricia Precht, Haiyang Jiang, Yie Liu, Michael J Pazin, Mark P Mattson. Proc Natl Acad Sci U S A 2011
19
20

An H2A Histone Isotype, H2ac, Associates with Telomere and Maintains Telomere Integrity.
Chia-Hsin Su, Ching Cheng, Tsai-Yu Tzeng, I-Hsuan Lin, Ming-Ta Hsu. PLoS One 2016
2
100

Partial knockdown of TRF2 increase radiosensitivity of human mesenchymal stem cells.
O Orun, P Mega Tiber, N Serakinci. Int J Biol Macromol 2016
8
25

Molecular targeting of TRF2 suppresses the growth and tumorigenesis of glioblastoma stem cells.
Yun Bai, Justin D Lathia, Peisu Zhang, William Flavahan, Jeremy N Rich, Mark P Mattson. Glia 2014
21
20

Genome-wide computational and expression analyses reveal G-quadruplex DNA motifs as conserved cis-regulatory elements in human and related species.
Anjali Verma, Kangkan Halder, Rashi Halder, Vinod Kumar Yadav, Pooja Rawal, Ram Krishna Thakur, Farhan Mohd, Abhay Sharma, Shantanu Chowdhury. J Med Chem 2008
140
20

In vivo stoichiometry of shelterin components.
Kaori K Takai, Sarah Hooper, Stephanie Blackwood, Rita Gandhi, Titia de Lange. J Biol Chem 2010
153
20

Telomere-independent Rap1 is an IKK adaptor and regulates NF-kappaB-dependent gene expression.
Hsiangling Teo, Sourav Ghosh, Hendrik Luesch, Arkasubhra Ghosh, Ee Tsin Wong, Najib Malik, Anthony Orth, Paul de Jesus, Anthony S Perry, Jeffrey D Oliver,[...]. Nat Cell Biol 2010
125
20

Mitochondrial localization of telomeric protein TIN2 links telomere regulation to metabolic control.
Liuh-Yow Chen, Yi Zhang, Qinfen Zhang, Hongzhi Li, Zhenhua Luo, Hezhi Fang, Sok Ho Kim, Li Qin, Patricia Yotnda, Jianming Xu,[...]. Mol Cell 2012
62
20

RAP1 protects from obesity through its extratelomeric role regulating gene expression.
Paula Martínez, Gonzalo Gómez-López, Fernando García, Evi Mercken, Sarah Mitchell, Juana M Flores, Rafael de Cabo, Maria A Blasco. Cell Rep 2013
71
20



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.