A citation-based method for searching scientific literature

Kathyani Parasram, Phillip Karpowicz. Cell Mol Life Sci 2020
Times Cited: 12







List of co-cited articles
106 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The Circadian Clock Gene BMAL1 Coordinates Intestinal Regeneration.
Kyle Stokes, Abrial Cooke, Hanna Chang, David R Weaver, David T Breault, Phillip Karpowicz. Cell Mol Gastroenterol Hepatol 2017
45
50


Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations.
Christoph A Thaiss, Maayan Levy, Tal Korem, Lenka Dohnalová, Hagit Shapiro, Diego A Jaitin, Eyal David, Deborah R Winter, Meital Gury-BenAri, Evgeny Tatirovsky,[...]. Cell 2016
385
33

The circadian clock gates the intestinal stem cell regenerative state.
Phillip Karpowicz, Yong Zhang, John B Hogenesch, Patrick Emery, Norbert Perrimon. Cell Rep 2013
87
33

Human epidermal stem cell function is regulated by circadian oscillations.
Peggy Janich, Kiana Toufighi, Guiomar Solanas, Nuno Miguel Luis, Susann Minkwitz, Luis Serrano, Ben Lehner, Salvador Aznar Benitah. Cell Stem Cell 2013
96
25

Circadian clock feedback cycle through NAMPT-mediated NAD+ biosynthesis.
Kathryn Moynihan Ramsey, Jun Yoshino, Cynthia S Brace, Dana Abrassart, Yumiko Kobayashi, Biliana Marcheva, Hee-Kyung Hong, Jason L Chong, Ethan D Buhr, Choogon Lee,[...]. Science 2009
767
25

The circadian molecular clock creates epidermal stem cell heterogeneity.
Peggy Janich, Gloria Pascual, Anna Merlos-Suárez, Eduard Batlle, Jürgen Ripperger, Urs Albrecht, Hai-Ying M Cheng, Karl Obrietan, Luciano Di Croce, Salvador Aznar Benitah. Nature 2011
212
25

Circadian Clock Genes Modulate Human Bone Marrow Mesenchymal Stem Cell Differentiation, Migration and Cell Cycle.
Helene Boucher, Valerie Vanneaux, Thomas Domet, Alexandre Parouchev, Jerome Larghero. PLoS One 2016
35
25

SIRT1 regulates circadian clock gene expression through PER2 deacetylation.
Gad Asher, David Gatfield, Markus Stratmann, Hans Reinke, Charna Dibner, Florian Kreppel, Raul Mostoslavsky, Frederick W Alt, Ueli Schibler. Cell 2008
925
25

Disruption of the Circadian Clock in Mice Increases Intestinal Permeability and Promotes Alcohol-Induced Hepatic Pathology and Inflammation.
Keith C Summa, Robin M Voigt, Christopher B Forsyth, Maliha Shaikh, Kate Cavanaugh, Yueming Tang, Martha Hotz Vitaterna, Shiwen Song, Fred W Turek, Ali Keshavarzian. PLoS One 2013
152
25

External light activates hair follicle stem cells through eyes via an ipRGC-SCN-sympathetic neural pathway.
Sabrina Mai-Yi Fan, Yi-Ting Chang, Chih-Lung Chen, Wei-Hung Wang, Ming-Kai Pan, Wen-Pin Chen, Wen-Yen Huang, Zijian Xu, Hai-En Huang, Ting Chen,[...]. Proc Natl Acad Sci U S A 2018
40
25

PERIOD2::LUCIFERASE real-time reporting of circadian dynamics reveals persistent circadian oscillations in mouse peripheral tissues.
Seung-Hee Yoo, Shin Yamazaki, Phillip L Lowrey, Kazuhiro Shimomura, Caroline H Ko, Ethan D Buhr, Sandra M Siepka, Hee-Kyung Hong, Won Jun Oh, Ook Joon Yoo,[...]. Proc Natl Acad Sci U S A 2004
25

Intercellular Coupling of the Cell Cycle and Circadian Clock in Adult Stem Cell Culture.
Toru Matsu-Ura, Andrey Dovzhenok, Eitaro Aihara, Jill Rood, Hung Le, Yan Ren, Andrew E Rosselot, Tongli Zhang, Choogon Lee, Karl Obrietan,[...]. Mol Cell 2016
62
25

Involvement of posttranscriptional regulation of Clock in the emergence of circadian clock oscillation during mouse development.
Yasuhiro Umemura, Nobuya Koike, Munehiro Ohashi, Yoshiki Tsuchiya, Qing Jun Meng, Yoichi Minami, Masayuki Hara, Moe Hisatomi, Kazuhiro Yagita. Proc Natl Acad Sci U S A 2017
38
25

A circadian gene expression atlas in mammals: implications for biology and medicine.
Ray Zhang, Nicholas F Lahens, Heather I Ballance, Michael E Hughes, John B Hogenesch. Proc Natl Acad Sci U S A 2014
25

Obesity and metabolic syndrome in circadian Clock mutant mice.
Fred W Turek, Corinne Joshu, Akira Kohsaka, Emily Lin, Ganka Ivanova, Erin McDearmon, Aaron Laposky, Sue Losee-Olson, Amy Easton, Dalan R Jensen,[...]. Science 2005
25

Circadian rhythm disruption impairs tissue homeostasis and exacerbates chronic inflammation in the intestine.
René Pagel, Florian Bär, Torsten Schröder, Annika Sünderhauf, Axel Künstner, Saleh M Ibrahim, Stella E Autenrieth, Kathrin Kalies, Peter König, Anthony H Tsang,[...]. FASEB J 2017
45
25

Diet Diurnally Regulates Small Intestinal Microbiome-Epithelial-Immune Homeostasis and Enteritis.
Timur Tuganbaev, Uria Mor, Stavros Bashiardes, Timur Liwinski, Samuel Philip Nobs, Avner Leshem, Mally Dori-Bachash, Christoph A Thaiss, Elisha Y Pinker, Karina Ratiner,[...]. Cell 2020
47
25

Expressions of tight junction proteins Occludin and Claudin-1 are under the circadian control in the mouse large intestine: implications in intestinal permeability and susceptibility to colitis.
Oh-oka Kyoko, Hiroshi Kono, Kayoko Ishimaru, Kunio Miyake, Takeo Kubota, Hideoki Ogawa, Ko Okumura, Shigenobu Shibata, Atsuhito Nakao. PLoS One 2014
71
25


The connection of circadian rhythm to inflammatory bowel disease.
Marie Gombert, Joaquín Carrasco-Luna, Gonzalo Pin-Arboledas, Pilar Codoñer-Franch. Transl Res 2019
25
16

Circadian time signatures of fitness and disease.
Joseph Bass, Mitchell A Lazar. Science 2016
304
16

Molecular mechanisms and physiological importance of circadian rhythms.
Alina Patke, Michael W Young, Sofia Axelrod. Nat Rev Mol Cell Biol 2020
244
16

Dosing-Time Makes the Poison: Circadian Regulation and Pharmacotherapy.
Robert Dallmann, Alper Okyar, Francis Lévi. Trends Mol Med 2016
129
16

Chronopharmacological strategies focused on chrono-drug discovery.
Shigehiro Ohdo, Satoru Koyanagi, Naoya Matsunaga. Pharmacol Ther 2019
27
16

Systems Chronotherapeutics.
Annabelle Ballesta, Pasquale F Innominato, Robert Dallmann, David A Rand, Francis A Lévi. Pharmacol Rev 2017
157
16

The circadian clock in cancer development and therapy.
Loning Fu, Nicole M Kettner. Prog Mol Biol Transl Sci 2013
141
16

Circadian clock control of endocrine factors.
Karen L Gamble, Ryan Berry, Stuart J Frank, Martin E Young. Nat Rev Endocrinol 2014
228
16

The circadian gene Period2 plays an important role in tumor suppression and DNA damage response in vivo.
Loning Fu, Helene Pelicano, Jinsong Liu, Peng Huang, Cheng Lee. Cell 2002
920
16

Circadian Rhythm and the Gut Microbiome.
R M Voigt, C B Forsyth, S J Green, P A Engen, A Keshavarzian. Int Rev Neurobiol 2016
105
16

Clock gene expression in the murine gastrointestinal tract: endogenous rhythmicity and effects of a feeding regimen.
Willemijntje A Hoogerwerf, Helen L Hellmich, Germaine Cornélissen, Franz Halberg, Vahakn B Shahinian, Jonathon Bostwick, Tor C Savidge, Vincent M Cassone. Gastroenterology 2007
177
16

Deficiency of the clock gene Bmal1 affects neural progenitor cell migration.
Amira A H Ali, Beryl Schwarz-Herzke, Shakila Mir, Benita Sahlender, Marion Victor, Boris Görg, Martin Schmuck, Katharina Dach, Ellen Fritsche, Andreas Kremer,[...]. Brain Struct Funct 2019
12
16

Circadian regulator CLOCK is a histone acetyltransferase.
Masao Doi, Jun Hirayama, Paolo Sassone-Corsi. Cell 2006
588
16


CLOCK and BMAL1 regulate MyoD and are necessary for maintenance of skeletal muscle phenotype and function.
Jessica L Andrews, Xiping Zhang, John J McCarthy, Erin L McDearmon, Troy A Hornberger, Brenda Russell, Kenneth S Campbell, Sandrine Arbogast, Michael B Reid, John R Walker,[...]. Proc Natl Acad Sci U S A 2010
229
16

Circadian Entrainment Triggers Maturation of Human In Vitro Islets.
Juan R Alvarez-Dominguez, Julie Donaghey, Niloofar Rasouli, Jennifer H R Kenty, Aharon Helman, Jocelyn Charlton, Juerg R Straubhaar, Alexander Meissner, Douglas A Melton. Cell Stem Cell 2020
66
16

Rhythms of mammalian body temperature can sustain peripheral circadian clocks.
Steven A Brown, Gottlieb Zumbrunn, Fabienne Fleury-Olela, Nicolas Preitner, Ueli Schibler. Curr Biol 2002
365
16

Robust circadian rhythms in organoid cultures from PERIOD2::LUCIFERASE mouse small intestine.
Sean R Moore, Jill Pruszka, Jefferson Vallance, Eitaro Aihara, Toru Matsuura, Marshall H Montrose, Noah F Shroyer, Christian I Hong. Dis Model Mech 2014
29
16

Circadian control of the NAD+ salvage pathway by CLOCK-SIRT1.
Yasukazu Nakahata, Saurabh Sahar, Giuseppe Astarita, Milota Kaluzova, Paolo Sassone-Corsi. Science 2009
825
16

Per2 induction limits lymphoid-biased haematopoietic stem cells and lymphopoiesis in the context of DNA damage and ageing.
Jianwei Wang, Yohei Morita, Bing Han, Silke Niemann, Bettina Löffler, K Lenhard Rudolph. Nat Cell Biol 2016
40
16

Intestinal Stem Cells Exhibit Conditional Circadian Clock Function.
Kathyani Parasram, Nathaniel Bernardon, Maha Hammoud, Hanna Chang, Li He, Norbert Perrimon, Phillip Karpowicz. Stem Cell Reports 2018
21
16

The NAD+-dependent deacetylase SIRT1 modulates CLOCK-mediated chromatin remodeling and circadian control.
Yasukazu Nakahata, Milota Kaluzova, Benedetto Grimaldi, Saurabh Sahar, Jun Hirayama, Danica Chen, Leonard P Guarente, Paolo Sassone-Corsi. Cell 2008
962
16

BMAL1-Driven Tissue Clocks Respond Independently to Light to Maintain Homeostasis.
Patrick-Simon Welz, Valentina M Zinna, Aikaterini Symeonidi, Kevin B Koronowski, Kenichiro Kinouchi, Jacob G Smith, Inés Marín Guillén, Andrés Castellanos, Stephen Furrow, Ferrán Aragón,[...]. Cell 2019
59
16

The intestinal microbiota regulates body composition through NFIL3 and the circadian clock.
Yuhao Wang, Zheng Kuang, Xiaofei Yu, Kelly A Ruhn, Masato Kubo, Lora V Hooper. Science 2017
208
16

Paneth cells constitute the niche for Lgr5 stem cells in intestinal crypts.
Toshiro Sato, Johan H van Es, Hugo J Snippert, Daniel E Stange, Robert G Vries, Maaike van den Born, Nick Barker, Noah F Shroyer, Marc van de Wetering, Hans Clevers. Nature 2011
16

The circadian clock in adult neural stem cell maintenance.
Swip Draijer, Inês Chaves, Marco F M Hoekman. Prog Neurobiol 2019
12
16

Brain and muscle Arnt-like protein-1 (BMAL1) controls circadian cell proliferation and susceptibility to UVB-induced DNA damage in the epidermis.
Mikhail Geyfman, Vivek Kumar, Qiang Liu, Rolando Ruiz, William Gordon, Francisco Espitia, Eric Cam, Sarah E Millar, Padhraic Smyth, Alexander Ihler,[...]. Proc Natl Acad Sci U S A 2012
152
16

Time-of-day-dependent enhancement of adult neurogenesis in the hippocampus.
So-ichi Tamai, Kamon Sanada, Yoshitaka Fukada. PLoS One 2008
44
16

Mobilized hematopoietic stem cell yield depends on species-specific circadian timing.
Daniel Lucas, Michela Battista, Patricia A Shi, Luis Isola, Paul S Frenette. Cell Stem Cell 2008
158
16

The intestinal microbiota programs diurnal rhythms in host metabolism through histone deacetylase 3.
Zheng Kuang, Yuhao Wang, Yun Li, Cunqi Ye, Kelly A Ruhn, Cassie L Behrendt, Eric N Olson, Lora V Hooper. Science 2019
123
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.