A citation-based method for searching scientific literature

Xin Yang, Qian-Lan Liu, Wei Xu, Yi-Chang Zhang, Ying Yang, Lin-Fang Ju, Jing Chen, Yu-Sheng Chen, Kuan Li, Jie Ren, Qianwen Sun, Yun-Gui Yang. Cell Res 2019
Times Cited: 47







List of co-cited articles
656 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


N6-methyladenosine regulates the stability of RNA:DNA hybrids in human cells.
Abdulkadir Abakir, Tom C Giles, Agnese Cristini, Jeremy M Foster, Nan Dai, Marta Starczak, Alejandro Rubio-Roldan, Miaomiao Li, Maria Eleftheriou, James Crutchley,[...]. Nat Genet 2020
70
61

R Loops: From Physiological to Pathological Roles.
Tatiana García-Muse, Andrés Aguilera. Cell 2019
156
42

R-Loops as Cellular Regulators and Genomic Threats.
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
226
40

R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters.
Paul A Ginno, Paul L Lott, Holly C Christensen, Ian Korf, Frédéric Chédin. Mol Cell 2012
450
38

Prevalent, Dynamic, and Conserved R-Loop Structures Associate with Specific Epigenomic Signatures in Mammals.
Lionel A Sanz, Stella R Hartono, Yoong Wearn Lim, Sandra Steyaert, Aparna Rajpurkar, Paul A Ginno, Xiaoqin Xu, Frédéric Chédin. Mol Cell 2016
249
38

METTL3 and N6-Methyladenosine Promote Homologous Recombination-Mediated Repair of DSBs by Modulating DNA-RNA Hybrid Accumulation.
Canfeng Zhang, Liping Chen, Di Peng, Ao Jiang, Yunru He, Yanru Zeng, Chen Xie, Haoxian Zhou, Xiaotong Luo, Haiying Liu,[...]. Mol Cell 2020
63
34

Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq.
Dan Dominissini, Sharon Moshitch-Moshkovitz, Schraga Schwartz, Mali Salmon-Divon, Lior Ungar, Sivan Osenberg, Karen Cesarkas, Jasmine Jacob-Hirsch, Ninette Amariglio, Martin Kupiec,[...]. Nature 2012
31

Human senataxin resolves RNA/DNA hybrids formed at transcriptional pause sites to promote Xrn2-dependent termination.
Konstantina Skourti-Stathaki, Nicholas J Proudfoot, Natalia Gromak. Mol Cell 2011
449
31

Regulatory R-loops as facilitators of gene expression and genome stability.
Christof Niehrs, Brian Luke. Nat Rev Mol Cell Biol 2020
93
31

The R-loop is a common chromatin feature of the Arabidopsis genome.
Wei Xu, Hui Xu, Kuan Li, Yingxu Fan, Yang Liu, Xuerui Yang, Qianwen Sun. Nat Plants 2017
79
29

Senataxin resolves RNA:DNA hybrids forming at DNA double-strand breaks to prevent translocations.
Sarah Cohen, Nadine Puget, Yea-Lih Lin, Thomas Clouaire, Marion Aguirrebengoa, Vincent Rocher, Philippe Pasero, Yvan Canitrot, Gaëlle Legube. Nat Commun 2018
146
27

GC skew at the 5' and 3' ends of human genes links R-loop formation to epigenetic regulation and transcription termination.
Paul A Ginno, Yoong Wearn Lim, Paul L Lott, Ian Korf, Frédéric Chédin. Genome Res 2013
208
27

Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons.
Kate D Meyer, Yogesh Saletore, Paul Zumbo, Olivier Elemento, Christopher E Mason, Samie R Jaffrey. Cell 2012
25

N(6)-methyladenosine-dependent RNA structural switches regulate RNA-protein interactions.
Nian Liu, Qing Dai, Guanqun Zheng, Chuan He, Marc Parisien, Tao Pan. Nature 2015
891
25

Histone H3 trimethylation at lysine 36 guides m6A RNA modification co-transcriptionally.
Huilin Huang, Hengyou Weng, Keren Zhou, Tong Wu, Boxuan Simen Zhao, Mingli Sun, Zhenhua Chen, Xiaolan Deng, Gang Xiao, Franziska Auer,[...]. Nature 2019
214
25

RNA m6A methylation regulates the ultraviolet-induced DNA damage response.
Yang Xiang, Benoit Laurent, Chih-Hung Hsu, Sigrid Nachtergaele, Zhike Lu, Wanqiang Sheng, Chuanyun Xu, Hao Chen, Jian Ouyang, Siqing Wang,[...]. Nature 2017
418
25

Transcription-Replication Conflict Orientation Modulates R-Loop Levels and Activates Distinct DNA Damage Responses.
Stephan Hamperl, Michael J Bocek, Joshua C Saldivar, Tomek Swigut, Karlene A Cimprich. Cell 2017
236
25

N 6-methyladenosine of chromosome-associated regulatory RNA regulates chromatin state and transcription.
Jun Liu, Xiaoyang Dou, Chuanyuan Chen, Chuan Chen, Chang Liu, Meng Michelle Xu, Siqi Zhao, Bin Shen, Yawei Gao, Dali Han,[...]. Science 2020
163
25

N6-methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO.
Guifang Jia, Ye Fu, Xu Zhao, Qing Dai, Guanqun Zheng, Ying Yang, Chengqi Yi, Tomas Lindahl, Tao Pan, Yun-Gui Yang,[...]. Nat Chem Biol 2011
25

N6-methyladenosine-dependent regulation of messenger RNA stability.
Xiao Wang, Zhike Lu, Adrian Gomez, Gary C Hon, Yanan Yue, Dali Han, Ye Fu, Marc Parisien, Qing Dai, Guifang Jia,[...]. Nature 2014
23

Recognition of RNA N6-methyladenosine by IGF2BP proteins enhances mRNA stability and translation.
Huilin Huang, Hengyou Weng, Wenju Sun, Xi Qin, Hailing Shi, Huizhe Wu, Boxuan Simen Zhao, Ana Mesquita, Chang Liu, Celvie L Yuan,[...]. Nat Cell Biol 2018
721
23

BRCA2 controls DNA:RNA hybrid level at DSBs by mediating RNase H2 recruitment.
Giuseppina D'Alessandro, Donna Rose Whelan, Sean Michael Howard, Valerio Vitelli, Xavier Renaudin, Marek Adamowicz, Fabio Iannelli, Corey Winston Jones-Weinert, MiYoung Lee, Valentina Matti,[...]. Nat Commun 2018
105
23

R-Loops Promote Antisense Transcription across the Mammalian Genome.
Sue Mei Tan-Wong, Somdutta Dhir, Nick J Proudfoot. Mol Cell 2019
55
23



R-ChIP Using Inactive RNase H Reveals Dynamic Coupling of R-loops with Transcriptional Pausing at Gene Promoters.
Liang Chen, Jia-Yu Chen, Xuan Zhang, Ying Gu, Rui Xiao, Changwei Shao, Peng Tang, Hao Qian, Daji Luo, Hairi Li,[...]. Mol Cell 2017
130
23

Transient RNA-DNA Hybrids Are Required for Efficient Double-Strand Break Repair.
Corina Ohle, Rafael Tesorero, Géza Schermann, Nikolay Dobrev, Irmgard Sinning, Tamás Fischer. Cell 2016
211
23


Drosha drives the formation of DNA:RNA hybrids around DNA break sites to facilitate DNA repair.
Wei-Ting Lu, Ben R Hawley, George L Skalka, Robert A Baldock, Ewan M Smith, Aldo S Bader, Michal Malewicz, Felicity Z Watts, Ania Wilczynska, Martin Bushell. Nat Commun 2018
107
23

Reading, writing and erasing mRNA methylation.
Sara Zaccara, Ryan J Ries, Samie R Jaffrey. Nat Rev Mol Cell Biol 2019
451
21

ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility.
Guanqun Zheng, John Arne Dahl, Yamei Niu, Peter Fedorcsak, Chun-Min Huang, Charles J Li, Cathrine B Vågbø, Yue Shi, Wen-Ling Wang, Shu-Hui Song,[...]. Mol Cell 2013
21

N(6)-methyladenosine Modulates Messenger RNA Translation Efficiency.
Xiao Wang, Boxuan Simen Zhao, Ian A Roundtree, Zhike Lu, Dali Han, Honghui Ma, Xiaocheng Weng, Kai Chen, Hailing Shi, Chuan He. Cell 2015
21

HNRNPA2B1 Is a Mediator of m(6)A-Dependent Nuclear RNA Processing Events.
Claudio R Alarcón, Hani Goodarzi, Hyeseung Lee, Xuhang Liu, Saeed Tavazoie, Sohail F Tavazoie. Cell 2015
603
21

Senataxin Mutation Reveals How R-Loops Promote Transcription by Blocking DNA Methylation at Gene Promoters.
Christopher Grunseich, Isabel X Wang, Jason A Watts, Joshua T Burdick, Robert D Guber, Zhengwei Zhu, Alan Bruzel, Tyler Lanman, Kelian Chen, Alice B Schindler,[...]. Mol Cell 2018
79
21

BRCA2 prevents R-loop accumulation and associates with TREX-2 mRNA export factor PCID2.
Vaibhav Bhatia, Sonia I Barroso, María L García-Rubio, Emanuela Tumini, Emilia Herrera-Moyano, Andrés Aguilera. Nature 2014
295
21

Promoter-bound METTL3 maintains myeloid leukaemia by m6A-dependent translation control.
Isaia Barbieri, Konstantinos Tzelepis, Luca Pandolfini, Junwei Shi, Gonzalo Millán-Zambrano, Samuel C Robson, Demetrios Aspris, Valentina Migliori, Andrew J Bannister, Namshik Han,[...]. Nature 2017
468
19

A METTL3-METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylation.
Jianzhao Liu, Yanan Yue, Dali Han, Xiao Wang, Ye Fu, Liang Zhang, Guifang Jia, Miao Yu, Zhike Lu, Xin Deng,[...]. Nat Chem Biol 2014
19

m(6)A RNA methylation promotes XIST-mediated transcriptional repression.
Deepak P Patil, Chun-Kan Chen, Brian F Pickering, Amy Chow, Constanza Jackson, Mitchell Guttman, Samie R Jaffrey. Nature 2016
696
19

Dynamic RNA Modifications in Gene Expression Regulation.
Ian A Roundtree, Molly E Evans, Tao Pan, Chuan He. Cell 2017
19

The m(6)A Methyltransferase METTL3 Promotes Translation in Human Cancer Cells.
Shuibin Lin, Junho Choe, Peng Du, Robinson Triboulet, Richard I Gregory. Mol Cell 2016
728
19

R loops: new modulators of genome dynamics and function.
José M Santos-Pereira, Andrés Aguilera. Nat Rev Genet 2015
393
19

Human Rad52 Promotes XPG-Mediated R-loop Processing to Initiate Transcription-Associated Homologous Recombination Repair.
Takaaki Yasuhara, Reona Kato, Yoshihiko Hagiwara, Bunsyo Shiotani, Motohiro Yamauchi, Shinichiro Nakada, Atsushi Shibata, Kiyoshi Miyagawa. Cell 2018
137
19

R-loops induce repressive chromatin marks over mammalian gene terminators.
Konstantina Skourti-Stathaki, Kinga Kamieniarz-Gdula, Nicholas J Proudfoot. Nature 2014
221
19

S1-DRIP-seq identifies high expression and polyA tracts as major contributors to R-loop formation.
Lamia Wahba, Lorenzo Costantino, Frederick J Tan, Anjali Zimmer, Douglas Koshland. Genes Dev 2016
136
19


YTHDC1 mediates nuclear export of N6-methyladenosine methylated mRNAs.
Ian A Roundtree, Guan-Zheng Luo, Zijie Zhang, Xiao Wang, Tao Zhou, Yiquang Cui, Jiahao Sha, Xingxu Huang, Laura Guerrero, Phil Xie,[...]. Elife 2017
403
17

R-loop stabilization represses antisense transcription at the Arabidopsis FLC locus.
Qianwen Sun, Tibor Csorba, Konstantina Skourti-Stathaki, Nicholas J Proudfoot, Caroline Dean. Science 2013
214
17

R Loops and Links to Human Disease.
Patricia Richard, James L Manley. J Mol Biol 2017
78
17

A mitosis-specific and R loop-driven ATR pathway promotes faithful chromosome segregation.
Lilian Kabeche, Hai Dang Nguyen, Rémi Buisson, Lee Zou. Science 2018
125
17

R loops: from transcription byproducts to threats to genome stability.
Andrés Aguilera, Tatiana García-Muse. Mol Cell 2012
587
17


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.