A citation-based method for searching scientific literature

Donghyeok Seol, Byung June Ko, Bongsang Kim, Han-Ha Chai, Dajeong Lim, Heebal Kim. Animals (Basel) 2019
Times Cited: 2







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Improved metagenomic analysis with Kraken 2.
Derrick E Wood, Jennifer Lu, Ben Langmead. Genome Biol 2019
544
50

The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor.
Lei Gao, Itay Gonda, Honghe Sun, Qiyue Ma, Kan Bao, Denise M Tieman, Elizabeth A Burzynski-Chang, Tara L Fish, Kaitlin A Stromberg, Gavin L Sacks,[...]. Nat Genet 2019
151
50

Dwarfism and impaired gut development in insulin-like growth factor II mRNA-binding protein 1-deficient mice.
Thomas V O Hansen, Niels A Hammer, Jacob Nielsen, Mette Madsen, Charlotte Dalbaeck, Ulla M Wewer, Jan Christiansen, Finn C Nielsen. Mol Cell Biol 2004
162
50

An oncopeptide regulates m6A recognition by the m6A reader IGF2BP1 and tumorigenesis.
Song Zhu, Ji-Zhong Wang, De Chen, Yu-Tian He, Nan Meng, Min Chen, Rui-Xun Lu, Xin-Hui Chen, Xiao-Lan Zhang, Guang-Rong Yan. Nat Commun 2020
43
50

Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
50

A regulatory mutation in IGF2 causes a major QTL effect on muscle growth in the pig.
Anne-Sophie Van Laere, Minh Nguyen, Martin Braunschweig, Carine Nezer, Catherine Collette, Laurence Moreau, Alan L Archibald, Chris S Haley, Nadine Buys, Michael Tally,[...]. Nature 2003
558
50


Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits.
Rajeev K Varshney, Mahendar Thudi, Manish Roorkiwal, Weiming He, Hari D Upadhyaya, Wei Yang, Prasad Bajaj, Philippe Cubry, Abhishek Rathore, Jianbo Jian,[...]. Nat Genet 2019
70
50

A complex genomic rearrangement involving the endothelin 3 locus causes dermal hyperpigmentation in the chicken.
Ben Dorshorst, Anna-Maja Molin, Carl-Johan Rubin, Anna M Johansson, Lina Strömstedt, Manh-Hung Pham, Chih-Feng Chen, Finn Hallböök, Chris Ashwell, Leif Andersson. PLoS Genet 2011
78
50


Structural variation in the chicken genome identified by paired-end next-generation DNA sequencing of reduced representation libraries.
Hindrik Hd Kerstens, Richard Pma Crooijmans, Bert W Dibbits, Addie Vereijken, Ron Okimoto, Martien Am Groenen. BMC Genomics 2011
15
50

Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources.
Mario Stanke, Oliver Schöffmann, Burkhard Morgenstern, Stephan Waack. BMC Bioinformatics 2006
502
50

The Rose-comb mutation in chickens constitutes a structural rearrangement causing both altered comb morphology and defective sperm motility.
Freyja Imsland, Chungang Feng, Henrik Boije, Bertrand Bed'hom, Valérie Fillon, Ben Dorshorst, Carl-Johan Rubin, Ranran Liu, Yu Gao, Xiaorong Gu,[...]. PLoS Genet 2012
65
50

An integrated peach genome structural variation map uncovers genes associated with fruit traits.
Jian Guo, Ke Cao, Cecilia Deng, Yong Li, Gengrui Zhu, Weichao Fang, Changwen Chen, Xinwei Wang, Jinlong Wu, Liping Guan,[...]. Genome Biol 2020
17
50

TASSEL: software for association mapping of complex traits in diverse samples.
Peter J Bradbury, Zhiwu Zhang, Dallas E Kroon, Terry M Casstevens, Yogesh Ramdoss, Edward S Buckler. Bioinformatics 2007
50

Towards the Complete Goat Pan-Genome by Recovering Missing Genomic Segments From the Reference Genome.
Ran Li, Weiwei Fu, Rui Su, Xiaomeng Tian, Duo Du, Yue Zhao, Zhuqing Zheng, Qiuming Chen, Shan Gao, Yudong Cai,[...]. Front Genet 2019
8
50

The wild species genome ancestry of domestic chickens.
Raman Akinyanju Lawal, Simon H Martin, Koen Vanmechelen, Addie Vereijken, Pradeepa Silva, Raed Mahmoud Al-Atiyat, Riyadh Salah Aljumaah, Joram M Mwacharo, Dong-Dong Wu, Ya-Ping Zhang,[...]. BMC Biol 2020
15
50

Structural Variant Detection by Large-scale Sequencing Reveals New Evolutionary Evidence on Breed Divergence between Chinese and European Pigs.
Pengju Zhao, Junhui Li, Huimin Kang, Haifei Wang, Ziyao Fan, Zongjun Yin, Jiafu Wang, Qin Zhang, Zhiquan Wang, Jian-Feng Liu. Sci Rep 2016
14
50

Variations in genome size between wild and domesticated lineages of fowls belonging to the Gallus gallus species.
Benoît Piégu, Peter Arensburger, Linda Beauclair, Marie Chabault, Emilie Raynaud, Vincent Coustham, Sophie Brard, Sébastien Guizard, Thierry Burlot, Elisabeth Le Bihan-Duval,[...]. Genomics 2020
4
50

The Olfactory Receptor OR51E1 Is Present along the Gastrointestinal Tract of Pigs, Co-Localizes with Enteroendocrine Cells and Is Modulated by Intestinal Microbiota.
Davide Priori, Michela Colombo, Paolo Clavenzani, Alfons J M Jansman, Jean-Paul Lallès, Paolo Trevisi, Paolo Bosi. PLoS One 2015
33
50

An intercross population study reveals genes associated with body size and plumage color in ducks.
Zhengkui Zhou, Ming Li, Hong Cheng, Wenlei Fan, Zhengrong Yuan, Qiang Gao, Yaxi Xu, Zhanbao Guo, Yunsheng Zhang, Jian Hu,[...]. Nat Commun 2018
61
50

Genetic dissection of growth traits in a Chinese indigenous × commercial broiler chicken cross.
Zheya Sheng, Mats E Pettersson, Xiaoxiang Hu, Chenglong Luo, Hao Qu, Dingming Shu, Xia Shen, Orjan Carlborg, Ning Li. BMC Genomics 2013
38
50

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown.
Mihaela Pertea, Daehwan Kim, Geo M Pertea, Jeffrey T Leek, Steven L Salzberg. Nat Protoc 2016
50


Activation of intestinal olfactory receptor stimulates glucagon-like peptide-1 secretion in enteroendocrine cells and attenuates hyperglycemia in type 2 diabetic mice.
Ki-Suk Kim, In-Seung Lee, Kang-Hoon Kim, Jiyoung Park, Yumi Kim, Jeong-Hee Choi, Jin-Sung Choi, Hyeung-Jin Jang. Sci Rep 2017
20
50


RepeatModeler2 for automated genomic discovery of transposable element families.
Jullien M Flynn, Robert Hubley, Clément Goubert, Jeb Rosen, Andrew G Clark, Cédric Feschotte, Arian F Smit. Proc Natl Acad Sci U S A 2020
142
50

IGF2BP1 overexpression stabilizes PEG10 mRNA in an m6A-dependent manner and promotes endometrial cancer progression.
Lin Zhang, Yicong Wan, Zihan Zhang, Yi Jiang, Zhiyue Gu, Xiaoling Ma, Sipei Nie, Jing Yang, Jinghe Lang, Wenjun Cheng,[...]. Theranostics 2021
9
50

Ena/VASP is required for endothelial barrier function in vivo.
Craig Furman, Alisha L Sieminski, Adam V Kwiatkowski, Douglas A Rubinson, Eliza Vasile, Roderick T Bronson, Reinhard Fässler, Frank B Gertler. J Cell Biol 2007
87
50


The barley pan-genome reveals the hidden legacy of mutation breeding.
Murukarthick Jayakodi, Sudharsan Padmarasu, Georg Haberer, Venkata Suresh Bonthala, Heidrun Gundlach, Cécile Monat, Thomas Lux, Nadia Kamal, Daniel Lang, Axel Himmelbach,[...]. Nature 2020
48
50

Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel.
Marco Gerdol, Rebeca Moreira, Fernando Cruz, Jessica Gómez-Garrido, Anna Vlasova, Umberto Rosani, Paola Venier, Miguel A Naranjo-Ortiz, Maria Murgarella, Samuele Greco,[...]. Genome Biol 2020
26
50

Genomic Analyses Reveal Potential Independent Adaptation to High Altitude in Tibetan Chickens.
Ming-Shan Wang, Yan Li, Min-Sheng Peng, Li Zhong, Zong-Ji Wang, Qi-Ye Li, Xiao-Long Tu, Yang Dong, Chun-Ling Zhu, Lu Wang,[...]. Mol Biol Evol 2015
98
50

CD-HIT: accelerated for clustering the next-generation sequencing data.
Limin Fu, Beifang Niu, Zhengwei Zhu, Sitao Wu, Weizhong Li. Bioinformatics 2012
50

Atherogenesis and metabolic dysregulation in LDL receptor-knockout rats.
Srinivas D Sithu, Marina V Malovichko, Krista A Riggs, Nalinie S Wickramasinghe, Millicent G Winner, Abhinav Agarwal, Rihab E Hamed-Berair, Anuradha Kalani, Daniel W Riggs, Aruni Bhatnagar,[...]. JCI Insight 2017
17
50

Liraglutide Reduces Both Atherosclerosis and Kidney Inflammation in Moderately Uremic LDLr-/- Mice.
Line S Bisgaard, Markus H Bosteen, Lisbeth N Fink, Charlotte M Sørensen, Alexander Rosendahl, Christina K Mogensen, Salka E Rasmussen, Bidda Rolin, Lars B Nielsen, Tanja X Pedersen. PLoS One 2016
18
50

Comprehensive variation discovery and recovery of missing sequence in the pig genome using multiple de novo assemblies.
Mingzhou Li, Lei Chen, Shilin Tian, Yu Lin, Qianzi Tang, Xuming Zhou, Diyan Li, Carol K L Yeung, Tiandong Che, Long Jin,[...]. Genome Res 2017
42
50

Genome-wide association study reveals the genetic determinism of growth traits in a Gushi-Anka F2 chicken population.
Yanhua Zhang, Yuzhe Wang, Yiyi Li, Junfeng Wu, Xinlei Wang, Cheng Bian, Yadong Tian, Guirong Sun, Ruili Han, Xiaojun Liu,[...]. Heredity (Edinb) 2021
4
50

Genome-wide patterns of genetic variation in two domestic chickens.
Wen-Lang Fan, Chen Siang Ng, Chih-Feng Chen, Mei-Yeh Jade Lu, Yu-Hsiang Chen, Chia-Jung Liu, Siao-Man Wu, Chih-Kuan Chen, Jiun-Jie Chen, Chi-Tang Mao,[...]. Genome Biol Evol 2013
43
50

Genome-wide genetic structure and selection signatures for color in 10 traditional Chinese yellow-feathered chicken breeds.
Xunhe Huang, Newton O Otecko, Minsheng Peng, Zhuoxian Weng, Weina Li, Jiebo Chen, Ming Zhong, Fusheng Zhong, Sihua Jin, Zhaoyu Geng,[...]. BMC Genomics 2020
6
50

Housekeeping genes tend to show reduced upstream sequence conservation.
Domènec Farré, Nicolás Bellora, Loris Mularoni, Xavier Messeguer, M Mar Albà. Genome Biol 2007
49
50

Using RepeatMasker to identify repetitive elements in genomic sequences.
Maja Tarailo-Graovac, Nansheng Chen. Curr Protoc Bioinformatics 2009
685
50

Insulin-like growth factor 2 mRNA-binding proteins (IGF2BPs): post-transcriptional drivers of cancer progression?
Jessica L Bell, Kristin Wächter, Britta Mühleck, Nikolaos Pazaitis, Marcel Köhn, Marcell Lederer, Stefan Hüttelmaier. Cell Mol Life Sci 2013
297
50

Genomic signatures of 60 years of bidirectional selection for 8-week body weight in chickens.
M Lillie, Z Y Sheng, C F Honaker, L Andersson, P B Siegel, Ö Carlborg. Poult Sci 2018
12
50

The mRNA-binding protein IGF2BP1 maintains intestinal barrier function by up-regulating occludin expression.
Vikash Singh, Chethana P Gowda, Vishal Singh, Ashwinkumar S Ganapathy, Dipti M Karamchandani, Melanie A Eshelman, Gregory S Yochum, Prashant Nighot, Vladimir S Spiegelman. J Biol Chem 2020
5
50

Breeding history and candidate genes responsible for black skin of Xichuan black-bone chicken.
Donghua Li, Guirong Sun, Meng Zhang, Yanfang Cao, Chenxi Zhang, Yawei Fu, Fang Li, Guoxi Li, Ruirui Jiang, Ruili Han,[...]. BMC Genomics 2020
3
50



The olfactory G protein-coupled receptor (Olfr-78/OR51E2) modulates the intestinal response to colitis.
Kumar Kotlo, Arivarasu N Anbazhagan, Shubha Priyamvada, Dulari Jayawardena, Anoop Kumar, Yang Chen, Yinglin Xia, Patricia W Finn, David L Perkins, Pradeep K Dudeja,[...]. Am J Physiol Cell Physiol 2020
7
50

Vasodilator phosphostimulated protein (VASP) protects endothelial barrier function during hypoxia.
Marthe A Schmit, Valbona Mirakaj, Manfred Stangassinger, Klemens König, David Köhler, Peter Rosenberger. Inflammation 2012
13
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.