A citation-based method for searching scientific literature

Angelina S Gross, Martin Graef. J Mol Biol 2020
Times Cited: 21







List of co-cited articles
113 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Mechanism and medical implications of mammalian autophagy.
Ivan Dikic, Zvulun Elazar. Nat Rev Mol Cell Biol 2018
893
19

Early steps in autophagy depend on direct phosphorylation of Atg9 by the Atg1 kinase.
Daniel Papinski, Martina Schuschnig, Wolfgang Reiter, Larissa Wilhelm, Christopher A Barnes, Alessio Maiolica, Isabella Hansmann, Thaddaeus Pfaffenwimmer, Monika Kijanska, Ingrid Stoffel,[...]. Mol Cell 2014
199
19

Mechanistic Insights into the Role of Atg11 in Selective Autophagy.
Katarzyna Zientara-Rytter, Suresh Subramani. J Mol Biol 2020
19
15

Recruitment and Activation of the ULK1/Atg1 Kinase Complex in Selective Autophagy.
Eleonora Turco, Dorotea Fracchiolla, Sascha Martens. J Mol Biol 2020
40
14

Atg9 establishes Atg2-dependent contact sites between the endoplasmic reticulum and phagophores.
Rubén Gómez-Sánchez, Jaqueline Rose, Rodrigo Guimarães, Muriel Mari, Daniel Papinski, Ester Rieter, Willie J Geerts, Ralph Hardenberg, Claudine Kraft, Christian Ungermann,[...]. J Cell Biol 2018
105
14

Autophagosomes form at ER-mitochondria contact sites.
Maho Hamasaki, Nobumichi Furuta, Atsushi Matsuda, Akiko Nezu, Akitsugu Yamamoto, Naonobu Fujita, Hiroko Oomori, Takeshi Noda, Tokuko Haraguchi, Yasushi Hiraoka,[...]. Nature 2013
14

Atg9 vesicles are an important membrane source during early steps of autophagosome formation.
Hayashi Yamamoto, Soichiro Kakuta, Tomonobu M Watanabe, Akira Kitamura, Takayuki Sekito, Chika Kondo-Kakuta, Rie Ichikawa, Masataka Kinjo, Yoshinori Ohsumi. J Cell Biol 2012
357
14

Cargo recognition and degradation by selective autophagy.
Damián Gatica, Vikramjit Lahiri, Daniel J Klionsky. Nat Cell Biol 2018
394
14

Autophagosome formation from membrane compartments enriched in phosphatidylinositol 3-phosphate and dynamically connected to the endoplasmic reticulum.
Elizabeth L Axe, Simon A Walker, Maria Manifava, Priya Chandra, H Llewelyn Roderick, Anja Habermann, Gareth Griffiths, Nicholas T Ktistakis. J Cell Biol 2008
14

AMPK and mTOR regulate autophagy through direct phosphorylation of Ulk1.
Joungmok Kim, Mondira Kundu, Benoit Viollet, Kun-Liang Guan. Nat Cell Biol 2011
14

Tor-mediated induction of autophagy via an Apg1 protein kinase complex.
Y Kamada, T Funakoshi, T Shintani, K Nagano, M Ohsumi, Y Ohsumi. J Cell Biol 2000
822
14

So Many Roads: the Multifaceted Regulation of Autophagy Induction.
Angel F Corona Velazquez, William T Jackson. Mol Cell Biol 2018
55
14

ULK1 induces autophagy by phosphorylating Beclin-1 and activating VPS34 lipid kinase.
Ryan C Russell, Ye Tian, Haixin Yuan, Hyun Woo Park, Yu-Yun Chang, Joungmok Kim, Haerin Kim, Thomas P Neufeld, Andrew Dillin, Kun-Liang Guan. Nat Cell Biol 2013
882
14

Bcl-2 antiapoptotic proteins inhibit Beclin 1-dependent autophagy.
Sophie Pattingre, Amina Tassa, Xueping Qu, Rita Garuti, Xiao Huan Liang, Noboru Mizushima, Milton Packer, Michael D Schneider, Beth Levine. Cell 2005
14


Lipids and Lipid-Binding Proteins in Selective Autophagy.
Laura R de la Ballina, Michael J Munson, Anne Simonsen. J Mol Biol 2020
14
14


Phase separation organizes the site of autophagosome formation.
Yuko Fujioka, Jahangir Md Alam, Daisuke Noshiro, Kazunari Mouri, Toshio Ando, Yasushi Okada, Alexander I May, Roland L Knorr, Kuninori Suzuki, Yoshinori Ohsumi,[...]. Nature 2020
96
9



The autophagic membrane tether ATG2A transfers lipids between membranes.
Shintaro Maeda, Chinatsu Otomo, Takanori Otomo. Elife 2019
99
9

Autophagy as a promoter of longevity: insights from model organisms.
Malene Hansen, David C Rubinsztein, David W Walker. Nat Rev Mol Cell Biol 2018
240
9

De novo phosphatidylcholine synthesis is required for autophagosome membrane formation and maintenance during autophagy.
Gabriela Andrejeva, Sharon Gowan, Gigin Lin, Anne-Christine Lf Wong Te Fong, Elham Shamsaei, Harry G Parkes, James Mui, Florence I Raynaud, Yasmin Asad, Gema Vizcay-Barrena,[...]. Autophagy 2020
28
9

The ATG conjugation systems in autophagy.
Noboru Mizushima. Curr Opin Cell Biol 2020
91
9

ATG2 transports lipids to promote autophagosome biogenesis.
Diana P Valverde, Shenliang Yu, Venkata Boggavarapu, Nikit Kumar, Joshua A Lees, Thomas Walz, Karin M Reinisch, Thomas J Melia. J Cell Biol 2019
157
9

Remodeling of ER-exit sites initiates a membrane supply pathway for autophagosome biogenesis.
Liang Ge, Min Zhang, Samuel J Kenny, Dawei Liu, Miharu Maeda, Kota Saito, Anandita Mathur, Ke Xu, Randy Schekman. EMBO Rep 2017
87
9

The EM structure of the TRAPPIII complex leads to the identification of a requirement for COPII vesicles on the macroautophagy pathway.
Dongyan Tan, Yiying Cai, Juan Wang, Jinzhong Zhang, Shekar Menon, Hui-Ting Chou, Susan Ferro-Novick, Karin M Reinisch, Thomas Walz. Proc Natl Acad Sci U S A 2013
90
9

Autophagy and the cell biology of age-related disease.
Andrew M Leidal, Beth Levine, Jayanta Debnath. Nat Cell Biol 2018
144
9

Atg13 HORMA domain recruits Atg9 vesicles during autophagosome formation.
Sho W Suzuki, Hayashi Yamamoto, Yu Oikawa, Chika Kondo-Kakuta, Yayoi Kimura, Hisashi Hirano, Yoshinori Ohsumi. Proc Natl Acad Sci U S A 2015
91
9

COPII vesicles contribute to autophagosomal membranes.
Takayuki Shima, Hiromi Kirisako, Hitoshi Nakatogawa. J Cell Biol 2019
44
9

Fine mapping of autophagy-related proteins during autophagosome formation in Saccharomyces cerevisiae.
Kuninori Suzuki, Manami Akioka, Chika Kondo-Kakuta, Hayashi Yamamoto, Yoshinori Ohsumi. J Cell Sci 2013
195
9


3D tomography reveals connections between the phagophore and endoplasmic reticulum.
Päivi Ylä-Anttila, Helena Vihinen, Eija Jokitalo, Eeva-Liisa Eskelinen. Autophagy 2009
447
9

An overview of macroautophagy in yeast.
Xin Wen, Daniel J Klionsky. J Mol Biol 2016
133
9

ER exit sites are physical and functional core autophagosome biogenesis components.
Martin Graef, Jonathan R Friedman, Christopher Graham, Mohan Babu, Jodi Nunnari. Mol Biol Cell 2013
216
9

Local Fatty Acid Channeling into Phospholipid Synthesis Drives Phagophore Expansion during Autophagy.
Maximilian Schütter, Patrick Giavalisco, Susanne Brodesser, Martin Graef. Cell 2020
71
9

Architecture of the Atg17 complex as a scaffold for autophagosome biogenesis.
Michael J Ragusa, Robin E Stanley, James H Hurley. Cell 2012
157
9

Autophagosome formation is initiated at phosphatidylinositol synthase-enriched ER subdomains.
Taki Nishimura, Norito Tamura, Nozomu Kono, Yuta Shimanaka, Hiroyuki Arai, Hayashi Yamamoto, Noboru Mizushima. EMBO J 2017
106
9

Atg2 mediates direct lipid transfer between membranes for autophagosome formation.
Takuo Osawa, Tetsuya Kotani, Tatsuya Kawaoka, Eri Hirata, Kuninori Suzuki, Hitoshi Nakatogawa, Yoshinori Ohsumi, Nobuo N Noda. Nat Struct Mol Biol 2019
144
9

The Atg1-kinase complex tethers Atg9-vesicles to initiate autophagy.
Yijian Rao, Marco G Perna, Benjamin Hofmann, Viola Beier, Thomas Wollert. Nat Commun 2016
76
9

Insights into autophagosome biogenesis from structural and biochemical analyses of the ATG2A-WIPI4 complex.
Saikat Chowdhury, Chinatsu Otomo, Alexander Leitner, Kazuto Ohashi, Ruedi Aebersold, Gabriel C Lander, Takanori Otomo. Proc Natl Acad Sci U S A 2018
92
9

An Atg9-containing compartment that functions in the early steps of autophagosome biogenesis.
Muriel Mari, Janice Griffith, Ester Rieter, Lakshmi Krishnappa, Daniel J Klionsky, Fulvio Reggiori. J Cell Biol 2010
301
9

The Atg2-Atg18 complex tethers pre-autophagosomal membranes to the endoplasmic reticulum for autophagosome formation.
Tetsuya Kotani, Hiromi Kirisako, Michiko Koizumi, Yoshinori Ohsumi, Hitoshi Nakatogawa. Proc Natl Acad Sci U S A 2018
107
9

Architecture of the ATG2B-WDR45 complex and an aromatic Y/HF motif crucial for complex formation.
Jing-Xiang Zheng, Yan Li, Yue-He Ding, Jun-Jie Liu, Mei-Jun Zhang, Meng-Qiu Dong, Hong-Wei Wang, Li Yu. Autophagy 2017
60
9

A subdomain of the endoplasmic reticulum forms a cradle for autophagosome formation.
Mitsuko Hayashi-Nishino, Naonobu Fujita, Takeshi Noda, Akihito Yamaguchi, Tamotsu Yoshimori, Akitsugu Yamamoto. Nat Cell Biol 2009
716
9

The Atg12-Atg5 conjugate has a novel E3-like activity for protein lipidation in autophagy.
Takao Hanada, Nobuo N Noda, Yoshinori Satomi, Yoshinobu Ichimura, Yuko Fujioka, Toshifumi Takao, Fuyuhiko Inagaki, Yoshinori Ohsumi. J Biol Chem 2007
728
9

FIP200, a ULK-interacting protein, is required for autophagosome formation in mammalian cells.
Taichi Hara, Akito Takamura, Chieko Kishi, Shun-Ichiro Iemura, Tohru Natsume, Jun-Lin Guan, Noboru Mizushima. J Cell Biol 2008
648
9

Small Molecule Inhibition of the Autophagy Kinase ULK1 and Identification of ULK1 Substrates.
Daniel F Egan, Matthew G H Chun, Mitchell Vamos, Haixia Zou, Juan Rong, Chad J Miller, Hua Jane Lou, Dhanya Raveendra-Panickar, Chih-Cheng Yang, Douglas J Sheffler,[...]. Mol Cell 2015
361
9


Atg8 controls phagophore expansion during autophagosome formation.
Zhiping Xie, Usha Nair, Daniel J Klionsky. Mol Biol Cell 2008
465
9


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.