A citation-based method for searching scientific literature

Amelia J Hodges, Nicholas O Hudson, Bethany A Buck-Koehntop. J Mol Biol 2019
Times Cited: 5







List of co-cited articles
18 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Toward a Mechanistic Understanding of DNA Methylation Readout by Transcription Factors.
Judith F Kribelbauer, Xiang-Jun Lu, Remo Rohs, Richard S Mann, Harmen J Bussemaker. J Mol Biol 2019
13
80

Impact of cytosine methylation on DNA binding specificities of human transcription factors.
Yimeng Yin, Ekaterina Morgunova, Arttu Jolma, Eevi Kaasinen, Biswajyoti Sahu, Syed Khund-Sayeed, Pratyush K Das, Teemu Kivioja, Kashyap Dave, Fan Zhong,[...]. Science 2017
410
60


Methyl-dependent and spatial-specific DNA recognition by the orthologous transcription factors human AP-1 and Epstein-Barr virus Zta.
Samuel Hong, Dongxue Wang, John R Horton, Xing Zhang, Samuel H Speck, Robert M Blumenthal, Xiaodong Cheng. Nucleic Acids Res 2017
25
40

Molecular basis for recognition of methylated and specific DNA sequences by the zinc finger protein Kaiso.
Bethany A Buck-Koehntop, Robyn L Stanfield, Damian C Ekiert, Maria A Martinez-Yamout, H Jane Dyson, Ian A Wilson, Peter E Wright. Proc Natl Acad Sci U S A 2012
71
40

Zinc Finger Readers of Methylated DNA.
Nicholas O Hudson, Bethany A Buck-Koehntop. Molecules 2018
18
40

Dnmt3L and the establishment of maternal genomic imprints.
D Bourc'his, G L Xu, C S Lin, B Bollman, T H Bestor. Science 2001
911
40



Structural basis for hydroxymethylcytosine recognition by the SRA domain of UHRF2.
Ting Zhou, Jun Xiong, Mingzhu Wang, Na Yang, Jiemin Wong, Bing Zhu, Rui-Ming Xu. Mol Cell 2014
63
40

A common mode of recognition for methylated CpG.
Yiwei Liu, Xing Zhang, Robert M Blumenthal, Xiaodong Cheng. Trends Biochem Sci 2013
63
40

Glucocorticoid receptor signaling in health and disease.
Mahita Kadmiel, John A Cidlowski. Trends Pharmacol Sci 2013
397
40

Tethering not required: the glucocorticoid receptor binds directly to activator protein-1 recognition motifs to repress inflammatory genes.
Emily R Weikum, Ian Mitchelle S de Vera, Jerome C Nwachukwu, William H Hudson, Kendall W Nettles, Douglas J Kojetin, Eric A Ortlund. Nucleic Acids Res 2017
29
40

Structural basis for effects of CpA modifications on C/EBPβ binding of DNA.
Jie Yang, John R Horton, Dongxue Wang, Ren Ren, Jia Li, Deqiang Sun, Yun Huang, Xing Zhang, Robert M Blumenthal, Xiaodong Cheng. Nucleic Acids Res 2019
11
40

Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA.
B F Luisi, W X Xu, Z Otwinowski, L P Freedman, K R Yamamoto, P B Sigler. Nature 1991
40

The structural basis of direct glucocorticoid-mediated transrepression.
William H Hudson, Christine Youn, Eric A Ortlund. Nat Struct Mol Biol 2013
101
40

DNA binding site sequence directs glucocorticoid receptor structure and activity.
Sebastiaan H Meijsing, Miles A Pufall, Alex Y So, Darren L Bates, Lin Chen, Keith R Yamamoto. Science 2009
472
40

Distal substitutions drive divergent DNA specificity among paralogous transcription factors through subdivision of conformational space.
William H Hudson, Bradley R Kossmann, Ian Mitchelle S de Vera, Shih-Wei Chuo, Emily R Weikum, Geeta N Eick, Joseph W Thornton, Ivaylo N Ivanov, Douglas J Kojetin, Eric A Ortlund. Proc Natl Acad Sci U S A 2016
16
40

Reading Targeted DNA Damage in the Active Demethylation Pathway: Role of Accessory Domains of Eukaryotic AP Endonucleases and Thymine-DNA Glycosylases.
Alexander V Popov, Inga R Grin, Antonina P Dvornikova, Bakhyt T Matkarimov, Regina Groisman, Murat Saparbaev, Dmitry O Zharkov. J Mol Biol 2019
7
20


Genome-wide evolutionary analysis of eukaryotic DNA methylation.
Assaf Zemach, Ivy E McDaniel, Pedro Silva, Daniel Zilberman. Science 2010
973
20

Dynamics and Context-Dependent Roles of DNA Methylation.
Christina Ambrosi, Massimiliano Manzo, Tuncay Baubec. J Mol Biol 2017
73
20

Detection of DNA Modifications by Sequence-Specific Transcription Factors.
Jie Yang, Xing Zhang, Robert M Blumenthal, Xiaodong Cheng. J Mol Biol 2019
6
20

DNA Modification Readers and Writers and Their Interplay.
Cathia Rausch, Florian D Hastert, M Cristina Cardoso. J Mol Biol 2019
22
20



Mechanisms of DNA Methyltransferase Recruitment in Mammals.
Marthe Laisné, Nikhil Gupta, Olivier Kirsh, Sriharsa Pradhan, Pierre-Antoine Defossez. Genes (Basel) 2018
17
20

DNA methylation pathways and their crosstalk with histone methylation.
Jiamu Du, Lianna M Johnson, Steven E Jacobsen, Dinshaw J Patel. Nat Rev Mol Cell Biol 2015
420
20


In embryonic stem cells, ZFP57/KAP1 recognize a methylated hexanucleotide to affect chromatin and DNA methylation of imprinting control regions.
Simon Quenneville, Gaetano Verde, Andrea Corsinotti, Adamandia Kapopoulou, Johan Jakobsson, Sandra Offner, Ilaria Baglivo, Paolo V Pedone, Giovanna Grimaldi, Andrea Riccio,[...]. Mol Cell 2011
354
20

The diverse roles of DNA methylation in mammalian development and disease.
Maxim V C Greenberg, Deborah Bourc'his. Nat Rev Mol Cell Biol 2019
420
20

The Molecular Basis of MeCP2 Function in the Brain.
Rebekah Tillotson, Adrian Bird. J Mol Biol 2019
34
20

Human body epigenome maps reveal noncanonical DNA methylation variation.
Matthew D Schultz, Yupeng He, John W Whitaker, Manoj Hariharan, Eran A Mukamel, Danny Leung, Nisha Rajagopal, Joseph R Nery, Mark A Urich, Huaming Chen,[...]. Nature 2015
346
20

Methylation-dependent and -independent genomic targeting principles of the MBD protein family.
Tuncay Baubec, Robert Ivánek, Florian Lienert, Dirk Schübeler. Cell 2013
207
20

CpG islands influence chromatin structure via the CpG-binding protein Cfp1.
John P Thomson, Peter J Skene, Jim Selfridge, Thomas Clouaire, Jacky Guy, Shaun Webb, Alastair R W Kerr, Aimée Deaton, Rob Andrews, Keith D James,[...]. Nature 2010
428
20

Dynamic DNA methylation: In the right place at the right time.
Chongyuan Luo, Petra Hajkova, Joseph R Ecker. Science 2018
185
20


Biotechnological Applications of MBD Domain Proteins for DNA Methylation Analysis.
Albert Jeltsch, Julian Broche, Cristiana Lungu, Pavel Bashtrykov. J Mol Biol 2019
9
20

Sequence-specific recognition of methylated DNA by human zinc-finger proteins.
Nobuhiro Sasai, Mitsuyoshi Nakao, Pierre-Antoine Defossez. Nucleic Acids Res 2010
75
20

Competition between DNA methylation and transcription factors determines binding of NRF1.
Silvia Domcke, Anaïs Flore Bardet, Paul Adrian Ginno, Dominik Hartl, Lukas Burger, Dirk Schübeler. Nature 2015
239
20


DNA-binding factors shape the mouse methylome at distal regulatory regions.
Michael B Stadler, Rabih Murr, Lukas Burger, Robert Ivanek, Florian Lienert, Anne Schöler, Erik van Nimwegen, Christiane Wirbelauer, Edward J Oakeley, Dimos Gaidatzis,[...]. Nature 2011
871
20

A phase I study of hydralazine to demethylate and reactivate the expression of tumor suppressor genes.
Pilar Zambrano, Blanca Segura-Pacheco, Enrique Perez-Cardenas, Lucely Cetina, Alma Revilla-Vazquez, Lucía Taja-Chayeb, Alma Chavez-Blanco, Enrique Angeles, Gustavo Cabrera, Karina Sandoval,[...]. BMC Cancer 2005
104
20

N6-Methyladenine DNA Modification in the Human Genome.
Chuan-Le Xiao, Song Zhu, Minghui He, De Chen, Qian Zhang, Ying Chen, Guoliang Yu, Jinbao Liu, Shang-Qian Xie, Feng Luo,[...]. Mol Cell 2018
182
20


Rapid and transient recruitment of DNMT1 to DNA double-strand breaks is mediated by its interaction with multiple components of the DNA damage response machinery.
Kyungsoo Ha, Gun Eui Lee, Stela S Palii, Kevin D Brown, Yoshihiko Takeda, Kebin Liu, Kapil N Bhalla, Keith D Robertson. Hum Mol Genet 2011
70
20

ATRX Promotes DNA Repair Synthesis and Sister Chromatid Exchange during Homologous Recombination.
Szilvia Juhász, Amira Elbakry, Arthur Mathes, Markus Löbrich. Mol Cell 2018
55
20

CTCF prevents genomic instability by promoting homologous recombination-directed DNA double-strand break repair.
Fengchao Lang, Xin Li, Wenhai Zheng, Zhuoran Li, Danfeng Lu, Guijun Chen, Daohua Gong, Liping Yang, Jinlin Fu, Peng Shi,[...]. Proc Natl Acad Sci U S A 2017
36
20

PARP1 Links CHD2-Mediated Chromatin Expansion and H3.3 Deposition to DNA Repair by Non-homologous End-Joining.
Martijn S Luijsterburg, Inge de Krijger, Wouter W Wiegant, Rashmi G Shah, Godelieve Smeenk, Anton J L de Groot, Alex Pines, Alfred C O Vertegaal, Jacqueline J L Jacobs, Girish M Shah,[...]. Mol Cell 2016
140
20

Gadd45a promotes DNA demethylation through TDG.
Zheng Li, Tian-Peng Gu, Alain R Weber, Jia-Zhen Shen, Bin-Zhong Li, Zhi-Guo Xie, Ruichuan Yin, Fan Guo, Xiaomeng Liu, Fuchou Tang,[...]. Nucleic Acids Res 2015
52
20


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.