A citation-based method for searching scientific literature

Andrea Cossarizza, Hyun-Dong Chang, Andreas Radbruch, Andreas Acs, Dieter Adam, Sabine Adam-Klages, William W Agace, Nima Aghaeepour, Mübeccel Akdis, Matthieu Allez, Larissa Nogueira Almeida, Giorgia Alvisi, Graham Anderson, Immanuel Andrä, Francesco Annunziato, Achille Anselmo, Petra Bacher, Cosima T Baldari, Sudipto Bari, Vincenzo Barnaba, Joana Barros-Martins, Luca Battistini, Wolfgang Bauer, Sabine Baumgart, Nicole Baumgarth, Dirk Baumjohann, Bianka Baying, Mary Bebawy, Burkhard Becher, Wolfgang Beisker, Vladimir Benes, Rudi Beyaert, Alfonso Blanco, Dominic A Boardman, Christian Bogdan, Jessica G Borger, Giovanna Borsellino, Philip E Boulais, Jolene A Bradford, Dirk Brenner, Ryan R Brinkman, Anna E S Brooks, Dirk H Busch, Martin Büscher, Timothy P Bushnell, Federica Calzetti, Garth Cameron, Ilenia Cammarata, Xuetao Cao, Susanna L Cardell, Stefano Casola, Marco A Cassatella, Andrea Cavani, Antonio Celada, Lucienne Chatenoud, Pratip K Chattopadhyay, Sue Chow, Eleni Christakou, Luka Čičin-Šain, Mario Clerici, Federico S Colombo, Laura Cook, Anne Cooke, Andrea M Cooper, Alexandra J Corbett, Antonio Cosma, Lorenzo Cosmi, Pierre G Coulie, Ana Cumano, Ljiljana Cvetkovic, Van Duc Dang, Chantip Dang-Heine, Martin S Davey, Derek Davies, Sara De Biasi, Genny Del Zotto, Gelo Victoriano Dela Cruz, Michael Delacher, Silvia Della Bella, Paolo Dellabona, Günnur Deniz, Mark Dessing, James P Di Santo, Andreas Diefenbach, Francesco Dieli, Andreas Dolf, Thomas Dörner, Regine J Dress, Diana Dudziak, Michael Dustin, Charles-Antoine Dutertre, Friederike Ebner, Sidonia B G Eckle, Matthias Edinger, Pascale Eede, Götz R A Ehrhardt, Marcus Eich, Pablo Engel, Britta Engelhardt, Anna Erdei, Charlotte Esser, Bart Everts, Maximilien Evrard, Christine S Falk, Todd A Fehniger, Mar Felipo-Benavent, Helen Ferry, Markus Feuerer, Andrew Filby, Kata Filkor, Simon Fillatreau, Marie Follo, Irmgard Förster, John Foster, Gemma A Foulds, Britta Frehse, Paul S Frenette, Stefan Frischbutter, Wolfgang Fritzsche, David W Galbraith, Anastasia Gangaev, Natalio Garbi, Brice Gaudilliere, Ricardo T Gazzinelli, Jens Geginat, Wilhelm Gerner, Nicholas A Gherardin, Kamran Ghoreschi, Lara Gibellini, Florent Ginhoux, Keisuke Goda, Dale I Godfrey, Christoph Goettlinger, Jose M González-Navajas, Carl S Goodyear, Andrea Gori, Jane L Grogan, Daryl Grummitt, Andreas Grützkau, Claudia Haftmann, Jonas Hahn, Hamida Hammad, Günter Hämmerling, Leo Hansmann, Goran Hansson, Christopher M Harpur, Susanne Hartmann, Andrea Hauser, Anja E Hauser, David L Haviland, David Hedley, Daniela C Hernández, Guadalupe Herrera, Martin Herrmann, Christoph Hess, Thomas Höfer, Petra Hoffmann, Kristin Hogquist, Tristan Holland, Thomas Höllt, Rikard Holmdahl, Pleun Hombrink, Jessica P Houston, Bimba F Hoyer, Bo Huang, Fang-Ping Huang, Johanna E Huber, Jochen Huehn, Michael Hundemer, Christopher A Hunter, William Y K Hwang, Anna Iannone, Florian Ingelfinger, Sabine M Ivison, Hans-Martin Jäck, Peter K Jani, Beatriz Jávega, Stipan Jonjic, Toralf Kaiser, Tomas Kalina, Thomas Kamradt, Stefan H E Kaufmann, Baerbel Keller, Steven L C Ketelaars, Ahad Khalilnezhad, Srijit Khan, Jan Kisielow, Paul Klenerman, Jasmin Knopf, Hui-Fern Koay, Katja Kobow, Jay K Kolls, Wan Ting Kong, Manfred Kopf, Thomas Korn, Katharina Kriegsmann, Hendy Kristyanto, Thomas Kroneis, Andreas Krueger, Jenny Kühne, Christian Kukat, Désirée Kunkel, Heike Kunze-Schumacher, Tomohiro Kurosaki, Christian Kurts, Pia Kvistborg, Immanuel Kwok, Jonathan Landry, Olivier Lantz, Paola Lanuti, Francesca LaRosa, Agnès Lehuen, Salomé LeibundGut-Landmann, Michael D Leipold, Leslie Y T Leung, Megan K Levings, Andreia C Lino, Francesco Liotta, Virginia Litwin, Yanling Liu, Hans-Gustaf Ljunggren, Michael Lohoff, Giovanna Lombardi, Lilly Lopez, Miguel López-Botet, Amy E Lovett-Racke, Erik Lubberts, Herve Luche, Burkhard Ludewig, Enrico Lugli, Sebastian Lunemann, Holden T Maecker, Laura Maggi, Orla Maguire, Florian Mair, Kerstin H Mair, Alberto Mantovani, Rudolf A Manz, Aaron J Marshall, Alicia Martínez-Romero, Glòria Martrus, Ivana Marventano, Wlodzimierz Maslinski, Giuseppe Matarese, Anna Vittoria Mattioli, Christian Maueröder, Alessio Mazzoni, James McCluskey, Mairi McGrath, Helen M McGuire, Iain B McInnes, Henrik E Mei, Fritz Melchers, Susanne Melzer, Dirk Mielenz, Stephen D Miller, Kingston H G Mills, Hans Minderman, Jenny Mjösberg, Jonni Moore, Barry Moran, Lorenzo Moretta, Tim R Mosmann, Susann Müller, Gabriele Multhoff, Luis Enrique Muñoz, Christian Münz, Toshinori Nakayama, Milena Nasi, Katrin Neumann, Lai Guan Ng, Antonia Niedobitek, Sussan Nourshargh, Gabriel Núñez, José-Enrique O'Connor, Aaron Ochel, Anna Oja, Diana Ordonez, Alberto Orfao, Eva Orlowski-Oliver, Wenjun Ouyang, Annette Oxenius, Raghavendra Palankar, Isabel Panse, Kovit Pattanapanyasat, Malte Paulsen, Dinko Pavlinic, Livius Penter, Pärt Peterson, Christian Peth, Jordi Petriz, Federica Piancone, Winfried F Pickl, Silvia Piconese, Marcello Pinti, A Graham Pockley, Malgorzata Justyna Podolska, Zhiyong Poon, Katharina Pracht, Immo Prinz, Carlo E M Pucillo, Sally A Quataert, Linda Quatrini, Kylie M Quinn, Helena Radbruch, Tim R D J Radstake, Susann Rahmig, Hans-Peter Rahn, Bartek Rajwa, Gevitha Ravichandran, Yotam Raz, Jonathan A Rebhahn, Diether Recktenwald, Dorothea Reimer, Caetano Reis e Sousa, Ester B M Remmerswaal, Lisa Richter, Laura G Rico, Andy Riddell, Aja M Rieger, J Paul Robinson, Chiara Romagnani, Anna Rubartelli, Jürgen Ruland, Armin Saalmüller, Yvan Saeys, Takashi Saito, Shimon Sakaguchi, Francisco Sala-de-Oyanguren, Yvonne Samstag, Sharon Sanderson, Inga Sandrock, Angela Santoni, Ramon Bellmàs Sanz, Marina Saresella, Catherine Sautes-Fridman, Birgit Sawitzki, Linda Schadt, Alexander Scheffold, Hans U Scherer, Matthias Schiemann, Frank A Schildberg, Esther Schimisky, Andreas Schlitzer, Josephine Schlosser, Stephan Schmid, Steffen Schmitt, Kilian Schober, Daniel Schraivogel, Wolfgang Schuh, Thomas Schüler, Reiner Schulte, Axel Ronald Schulz, Sebastian R Schulz, Cristiano Scottá, Daniel Scott-Algara, David P Sester, T Vincent Shankey, Bruno Silva-Santos, Anna Katharina Simon, Katarzyna M Sitnik, Silvano Sozzani, Daniel E Speiser, Josef Spidlen, Anders Stahlberg, Alan M Stall, Natalie Stanley, Regina Stark, Christina Stehle, Tobit Steinmetz, Hannes Stockinger, Yousuke Takahama, Kiyoshi Takeda, Leonard Tan, Attila Tárnok, Gisa Tiegs, Gergely Toldi, Julia Tornack, Elisabetta Traggiai, Mohamed Trebak, Timothy I M Tree, Joe Trotter, John Trowsdale, Maria Tsoumakidou, Henning Ulrich, Sophia Urbanczyk, Willem van de Veen, Maries van den Broek, Edwin van der Pol, Sofie Van Gassen, Gert Van Isterdael, René A W van Lier, Marc Veldhoen, Salvador Vento-Asturias, Paulo Vieira, David Voehringer, Hans-Dieter Volk, Anouk von Borstel, Konrad von Volkmann, Ari Waisman, Rachael V Walker, Paul K Wallace, Sa A Wang, Xin M Wang, Michael D Ward, Kirsten A Ward-Hartstonge, Klaus Warnatz, Gary Warnes, Sarah Warth, Claudia Waskow, James V Watson, Carsten Watzl, Leonie Wegener, Thomas Weisenburger, Annika Wiedemann, Jürgen Wienands, Anneke Wilharm, Robert John Wilkinson, Gerald Willimsky, James B Wing, Rieke Winkelmann, Thomas H Winkler, Oliver F Wirz, Alicia Wong, Peter Wurst, Jennie H M Yang, Juhao Yang, Maria Yazdanbakhsh, Liping Yu, Alice Yue, Hanlin Zhang, Yi Zhao, Susanne Maria Ziegler, Christina Zielinski, Jakob Zimmermann, Arturo Zychlinsky. Eur J Immunol 2019
Times Cited: 518







List of co-cited articles
185 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
6

Mature IgM-expressing plasma cells sense antigen and develop competence for cytokine production upon antigenic challenge.
Pascal Blanc, Ludovic Moro-Sibilot, Lucas Barthly, Ferdinand Jagot, Sébastien This, Simon de Bernard, Laurent Buffat, Sébastien Dussurgey, Renaud Colisson, Elias Hobeika,[...]. Nat Commun 2016
44
13

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
5

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
5

A functional BCR in human IgA and IgM plasma cells.
Dora Pinto, Erica Montani, Martin Bolli, Guido Garavaglia, Federica Sallusto, Antonio Lanzavecchia, David Jarrossay. Blood 2013
65
7

A new staining protocol for detection of murine antibody-secreting plasma cell subsets by flow cytometry.
Katharina Pracht, Julia Meinzinger, Patrick Daum, Sebastian R Schulz, Dorothea Reimer, Manuela Hauke, Edith Roth, Dirk Mielenz, Claudia Berek, Joana Côrte-Real,[...]. Eur J Immunol 2017
69
7

Plasma cell ontogeny defined by quantitative changes in blimp-1 expression.
Axel Kallies, Jhagvaral Hasbold, David M Tarlinton, Wendy Dietrich, Lynn M Corcoran, Philip D Hodgkin, Stephen L Nutt. J Exp Med 2004
386
5

Simultaneous epitope and transcriptome measurement in single cells.
Marlon Stoeckius, Christoph Hafemeister, William Stephenson, Brian Houck-Loomis, Pratip K Chattopadhyay, Harold Swerdlow, Rahul Satija, Peter Smibert. Nat Methods 2017
935
4

Minimal information for studies of extracellular vesicles 2018 (MISEV2018): a position statement of the International Society for Extracellular Vesicles and update of the MISEV2014 guidelines.
Clotilde Théry, Kenneth W Witwer, Elena Aikawa, Maria Jose Alcaraz, Johnathon D Anderson, Ramaroson Andriantsitohaina, Anna Antoniou, Tanina Arab, Fabienne Archer, Georgia K Atkin-Smith,[...]. J Extracell Vesicles 2018
4

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
4

The generation of antibody-secreting plasma cells.
Stephen L Nutt, Philip D Hodgkin, David M Tarlinton, Lynn M Corcoran. Nat Rev Immunol 2015
650
4

FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data.
Sofie Van Gassen, Britt Callebaut, Mary J Van Helden, Bart N Lambrecht, Piet Demeester, Tom Dhaene, Yvan Saeys. Cytometry A 2015
619
4

viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia.
El-ad David Amir, Kara L Davis, Michelle D Tadmor, Erin F Simonds, Jacob H Levine, Sean C Bendall, Daniel K Shenfeld, Smita Krishnaswamy, Garry P Nolan, Dana Pe'er. Nat Biotechnol 2013
3

Computational flow cytometry: helping to make sense of high-dimensional immunology data.
Yvan Saeys, Sofie Van Gassen, Bart N Lambrecht. Nat Rev Immunol 2016
234
3

Mass Cytometry: Single Cells, Many Features.
Matthew H Spitzer, Garry P Nolan. Cell 2016
579
3

Integrated analysis of multimodal single-cell data.
Yuhan Hao, Stephanie Hao, Erica Andersen-Nissen, William M Mauck, Shiwei Zheng, Andrew Butler, Maddie J Lee, Aaron J Wilk, Charlotte Darby, Michael Zager,[...]. Cell 2021
575
3

Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment.
Jonas Schulte-Schrepping, Nico Reusch, Daniela Paclik, Kevin Baßler, Stephan Schlickeiser, Bowen Zhang, Benjamin Krämer, Tobias Krammer, Sophia Brumhard, Lorenzo Bonaguro,[...]. Cell 2020
563
3

An immune-cell signature of bacterial sepsis.
Miguel Reyes, Michael R Filbin, Roby P Bhattacharyya, Kianna Billman, Thomas Eisenhaure, Deborah T Hung, Bruce D Levy, Rebecca M Baron, Paul C Blainey, Marcia B Goldberg,[...]. Nat Med 2020
102
3

Molecular and cellular insights into T cell exhaustion.
E John Wherry, Makoto Kurachi. Nat Rev Immunol 2015
3

Defining 'T cell exhaustion'.
Christian U Blank, W Nicholas Haining, Werner Held, Patrick G Hogan, Axel Kallies, Enrico Lugli, Rachel C Lynn, Mary Philip, Anjana Rao, Nicholas P Restifo,[...]. Nat Rev Immunol 2019
380
3

Single-cell RNA sequencing to explore immune cell heterogeneity.
Efthymia Papalexi, Rahul Satija. Nat Rev Immunol 2018
485
3

Basic Multicolor Flow Cytometry.
Zofia Maciorowski, Pratip K Chattopadhyay, Paresh Jain. Curr Protoc Immunol 2017
35
8


Two subsets of memory T lymphocytes with distinct homing potentials and effector functions.
F Sallusto, D Lenig, R Förster, M Lipp, A Lanzavecchia. Nature 1999
3

The Chemokine Receptor CX3CR1 Defines Three Antigen-Experienced CD8 T Cell Subsets with Distinct Roles in Immune Surveillance and Homeostasis.
Carmen Gerlach, E Ashley Moseman, Scott M Loughhead, David Alvarez, Anthonie J Zwijnenburg, Lisette Waanders, Rohit Garg, Juan C de la Torre, Ulrich H von Andrian. Immunity 2016
265
3

MIFlowCyt: the minimum information about a Flow Cytometry Experiment.
Jamie A Lee, Josef Spidlen, Keith Boyce, Jennifer Cai, Nicholas Crosbie, Mark Dalphin, Jeff Furlong, Maura Gasparetto, Michael Goldberg, Elizabeth M Goralczyk,[...]. Cytometry A 2008
306
3

Single vs. swarm detection of microparticles and exosomes by flow cytometry.
E van der Pol, M J C van Gemert, A Sturk, R Nieuwland, T G van Leeuwen. J Thromb Haemost 2012
267
3

MIFlowCyt-EV: a framework for standardized reporting of extracellular vesicle flow cytometry experiments.
Joshua A Welsh, Edwin Van Der Pol, Ger J A Arkesteijn, Michel Bremer, Alain Brisson, Frank Coumans, Françoise Dignat-George, Erika Duggan, Ionita Ghiran, Bernd Giebel,[...]. J Extracell Vesicles 2020
122
3

Transcriptional profiling of mouse B cell terminal differentiation defines a signature for antibody-secreting plasma cells.
Wei Shi, Yang Liao, Simon N Willis, Nadine Taubenheim, Michael Inouye, David M Tarlinton, Gordon K Smyth, Philip D Hodgkin, Stephen L Nutt, Lynn M Corcoran. Nat Immunol 2015
234
3

Competence and competition: the challenge of becoming a long-lived plasma cell.
Andreas Radbruch, Gwendolin Muehlinghaus, Elke O Luger, Ayako Inamine, Kenneth G C Smith, Thomas Dörner, Falk Hiepe. Nat Rev Immunol 2006
683
3

Antibody-secreting cell destiny emerges during the initial stages of B-cell activation.
Christopher D Scharer, Dillon G Patterson, Tian Mi, Madeline J Price, Sakeenah L Hicks, Jeremy M Boss. Nat Commun 2020
16
18

LAG-3 Inhibitory Receptor Expression Identifies Immunosuppressive Natural Regulatory Plasma Cells.
Andreia C Lino, Van Duc Dang, Vicky Lampropoulou, Anna Welle, Jara Joedicke, Jelka Pohar, Quentin Simon, Jessie Thalmensi, Aurelia Baures, Vinciane Flühler,[...]. Immunity 2018
111
3

A unique population of IgG-expressing plasma cells lacking CD19 is enriched in human bone marrow.
Henrik E Mei, Ina Wirries, Daniela Frölich, Mikael Brisslert, Claudia Giesecke, Joachim R Grün, Tobias Alexander, Stefanie Schmidt, Katarzyna Luda, Anja A Kühl,[...]. Blood 2015
106
3

Unraveling the mysteries of plasma cells.
Wolfgang Schuh, Dirk Mielenz, Hans-Martin Jäck. Adv Immunol 2020
6
50

Long-Lived Plasma Cells Are Contained within the CD19(-)CD38(hi)CD138(+) Subset in Human Bone Marrow.
Jessica L Halliley, Christopher M Tipton, Jane Liesveld, Alexander F Rosenberg, Jaime Darce, Ivan V Gregoretti, Lana Popova, Denise Kaminiski, Christopher F Fucile, Igor Albizua,[...]. Immunity 2015
241
3

Metabolic and Transcriptional Modules Independently Diversify Plasma Cell Lifespan and Function.
Wing Y Lam, Arijita Jash, Cong-Hui Yao, Lucas D'Souza, Rachel Wong, Ryan M Nunley, Gordon P Meares, Gary J Patti, Deepta Bhattacharya. Cell Rep 2018
62
4

Early Emergence of CD19-Negative Human Antibody-Secreting Cells at the Plasmablast to Plasma Cell Transition.
Gururaj Arumugakani, Sophie J Stephenson, Darren J Newton, Andy Rawstron, Paul Emery, Gina M Doody, Dennis McGonagle, Reuben M Tooze. J Immunol 2017
25
12

Functional and genomic profiling of effector CD8 T cell subsets with distinct memory fates.
Surojit Sarkar, Vandana Kalia, W Nicholas Haining, Bogumila T Konieczny, Shruti Subramaniam, Rafi Ahmed. J Exp Med 2008
443
3

clusterProfiler: an R package for comparing biological themes among gene clusters.
Guangchuang Yu, Li-Gen Wang, Yanyan Han, Qing-Yu He. OMICS 2012
3

SCANPY: large-scale single-cell gene expression data analysis.
F Alexander Wolf, Philipp Angerer, Fabian J Theis. Genome Biol 2018
3

Spectral flow cytometry-Quo vadimus?
J Paul Robinson. Cytometry A 2019
18
16

An updated guide for the perplexed: cytometry in the high-dimensional era.
Thomas Liechti, Lukas M Weber, Thomas M Ashhurst, Natalie Stanley, Martin Prlic, Sofie Van Gassen, Florian Mair. Nat Immunol 2021
9
33

Standing out from the crowd: How to identify plasma cells.
Julie Tellier, Stephen L Nutt. Eur J Immunol 2017
28
10

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
3

Technical issues: flow cytometry and rare event analysis.
B D Hedley, M Keeney. Int J Lab Hematol 2013
46
4

The end of gating? An introduction to automated analysis of high dimensional cytometry data.
Florian Mair, Felix J Hartmann, Dunja Mrdjen, Vinko Tosevski, Carsten Krieg, Burkhard Becher. Eur J Immunol 2016
132
2

EuroFlow antibody panels for standardized n-dimensional flow cytometric immunophenotyping of normal, reactive and malignant leukocytes.
J J M van Dongen, L Lhermitte, S Böttcher, J Almeida, V H J van der Velden, J Flores-Montero, A Rawstron, V Asnafi, Q Lécrevisse, P Lucio,[...]. Leukemia 2012
512
2

Meeting the Challenges of High-Dimensional Single-Cell Data Analysis in Immunology.
Subarna Palit, Christoph Heuser, Gustavo P de Almeida, Fabian J Theis, Christina E Zielinski. Front Immunol 2019
39
5

Vitamin D Is Required for ILC3 Derived IL-22 and Protection From Citrobacter rodentium Infection.
Yang-Ding Lin, Juhi Arora, Kevin Diehl, Stephanie A Bora, Margherita T Cantorna. Front Immunol 2019
169
2

Standardizing immunophenotyping for the Human Immunology Project.
Holden T Maecker, J Philip McCoy, Robert Nussenblatt. Nat Rev Immunol 2012
628
2


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.