A citation-based method for searching scientific literature

Marina Juraleviciute, Joanna Pozniak, Jérémie Nsengimana, Mark Harland, Juliette Randerson-Moor, Patrik Wernhoff, Assia Bassarova, Geir Frode Øy, Gunhild Trøen, Vivi Ann Flørenes, David Timothy Bishop, Meenhard Herlyn, Julia Newton-Bishop, Ana Slipicevic. Pigment Cell Melanoma Res 2020
Times Cited: 8







List of co-cited articles
19 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Genome-wide association study identifies three loci associated with melanoma risk.
D Timothy Bishop, Florence Demenais, Mark M Iles, Mark Harland, John C Taylor, Eve Corda, Juliette Randerson-Moor, Joanne F Aitken, Marie-Francoise Avril, Esther Azizi,[...]. Nat Genet 2009
335
37

Genome-wide association study identifies three new melanoma susceptibility loci.
Jennifer H Barrett, Mark M Iles, Mark Harland, John C Taylor, Joanne F Aitken, Per Arne Andresen, Lars A Akslen, Bruce K Armstrong, Marie-Francoise Avril, Esther Azizi,[...]. Nat Genet 2011
187
37

Massively parallel reporter assays of melanoma risk variants identify MX2 as a gene promoting melanoma.
Jiyeon Choi, Tongwu Zhang, Andrew Vu, Julien Ablain, Matthew M Makowski, Leandro M Colli, Mai Xu, Rebecca C Hennessey, Jinhu Yin, Harriet Rothschild,[...]. Nat Commun 2020
24
37

Mx GTPases: dynamin-like antiviral machines of innate immunity.
Otto Haller, Peter Staeheli, Martin Schwemmle, Georg Kochs. Trends Microbiol 2015
251
37

IRF4 variants have age-specific effects on nevus count and predispose to melanoma.
David L Duffy, Mark M Iles, Dan Glass, Gu Zhu, Jennifer H Barrett, Veronica Höiom, Zhen Z Zhao, Richard A Sturm, Nicole Soranzo, Chris Hammond,[...]. Am J Hum Genet 2010
93
25

Common sequence variants on 20q11.22 confer melanoma susceptibility.
Kevin M Brown, Stuart Macgregor, Grant W Montgomery, David W Craig, Zhen Zhen Zhao, Kelly Iyadurai, Anjali K Henders, Nils Homer, Megan J Campbell, Mitchell Stark,[...]. Nat Genet 2008
165
25

Genome-wide association study identifies variants at 9p21 and 22q13 associated with development of cutaneous nevi.
Mario Falchi, Veronique Bataille, Nicholas K Hayward, David L Duffy, Julia A Newton Bishop, Tomi Pastinen, Alessandra Cervino, Zhen Z Zhao, Panos Deloukas, Nicole Soranzo,[...]. Nat Genet 2009
165
25

Multiple pigmentation gene polymorphisms account for a substantial proportion of risk of cutaneous malignant melanoma.
David L Duffy, Zhen Z Zhao, Richard A Sturm, Nicholas K Hayward, Nicholas G Martin, Grant W Montgomery. J Invest Dermatol 2010
131
25

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
25

Genetics of skin color variation in Europeans: genome-wide association studies with functional follow-up.
Fan Liu, Mijke Visser, David L Duffy, Pirro G Hysi, Leonie C Jacobs, Oscar Lao, Kaiyin Zhong, Susan Walsh, Lakshmi Chaitanya, Andreas Wollstein,[...]. Hum Genet 2015
83
25

Inhibition of nuclear import and cell-cycle progression by mutated forms of the dynamin-like GTPase MxB.
Megan C King, Graça Raposo, Mark A Lemmon. Proc Natl Acad Sci U S A 2004
90
25

Human MX2 is an interferon-induced post-entry inhibitor of HIV-1 infection.
Caroline Goujon, Olivier Moncorgé, Hélène Bauby, Tomas Doyle, Christopher C Ward, Torsten Schaller, Stéphane Hué, Wendy S Barclay, Reiner Schulz, Michael H Malim. Nature 2013
391
25

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
25


MX2 is an interferon-induced inhibitor of HIV-1 infection.
Melissa Kane, Shalini S Yadav, Julia Bitzegeio, Sebla B Kutluay, Trinity Zang, Sam J Wilson, John W Schoggins, Charles M Rice, Masahiro Yamashita, Theodora Hatziioannou,[...]. Nature 2013
340
25

Sequence variants at the TERT-CLPTM1L locus associate with many cancer types.
Thorunn Rafnar, Patrick Sulem, Simon N Stacey, Frank Geller, Julius Gudmundsson, Asgeir Sigurdsson, Margret Jakobsdottir, Hafdis Helgadottir, Steinunn Thorlacius, Katja K H Aben,[...]. Nat Genet 2009
473
25

Genome-wide association study identifies novel loci predisposing to cutaneous melanoma.
Christopher I Amos, Li-E Wang, Jeffrey E Lee, Jeffrey E Gershenwald, Wei V Chen, Shenying Fang, Roman Kosoy, Mingfeng Zhang, Abrar A Qureshi, Selina Vattathil,[...]. Hum Mol Genet 2011
156
25

Inherited genetic variants associated with occurrence of multiple primary melanoma.
David C Gibbs, Irene Orlow, Peter A Kanetsky, Li Luo, Anne Kricker, Bruce K Armstrong, Hoda Anton-Culver, Stephen B Gruber, Loraine D Marrett, Richard P Gallagher,[...]. Cancer Epidemiol Biomarkers Prev 2015
29
25


A common intronic variant of PARP1 confers melanoma risk and mediates melanocyte growth via regulation of MITF.
Jiyeon Choi, Mai Xu, Matthew M Makowski, Tongwu Zhang, Matthew H Law, Michael A Kovacs, Anton Granzhan, Wendy J Kim, Hemang Parikh, Michael Gartside,[...]. Nat Genet 2017
33
12

Fine mapping of genetic susceptibility loci for melanoma reveals a mixture of single variant and multiple variant regions.
Jennifer H Barrett, John C Taylor, Chloe Bright, Mark Harland, Alison M Dunning, Lars A Akslen, Per A Andresen, Marie-Françoise Avril, Esther Azizi, Giovanna Bianchi Scarrà,[...]. Int J Cancer 2015
22
12

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
12

Genetic effects on gene expression across human tissues.
Alexis Battle, Christopher D Brown, Barbara E Engelhardt, Stephen B Montgomery. Nature 2017
12

Association analysis identifies 65 new breast cancer risk loci.
Kyriaki Michailidou, Sara Lindström, Joe Dennis, Jonathan Beesley, Shirley Hui, Siddhartha Kar, Audrey Lemaçon, Penny Soucy, Dylan Glubb, Asha Rostamianfar,[...]. Nature 2017
583
12

Simultaneous analysis of all SNPs in genome-wide and re-sequencing association studies.
Clive J Hoggart, John C Whittaker, Maria De Iorio, David J Balding. PLoS Genet 2008
212
12

Melanocytes as instigators and victims of oxidative stress.
Laurence Denat, Ana L Kadekaro, Laurent Marrot, Sancy A Leachman, Zalfa A Abdel-Malek. J Invest Dermatol 2014
181
12

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.
Martin J Aryee, Andrew E Jaffe, Hector Corrada-Bravo, Christine Ladd-Acosta, Andrew P Feinberg, Kasper D Hansen, Rafael A Irizarry. Bioinformatics 2014
12

Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay.
Alexandre Melnikov, Anand Murugan, Xiaolan Zhang, Tiberiu Tesileanu, Li Wang, Peter Rogov, Soheil Feizi, Andreas Gnirke, Curtis G Callan, Justin B Kinney,[...]. Nat Biotechnol 2012
380
12

Systematic Functional Dissection of Common Genetic Variation Affecting Red Blood Cell Traits.
Jacob C Ulirsch, Satish K Nandakumar, Li Wang, Felix C Giani, Xiaolan Zhang, Peter Rogov, Alexandre Melnikov, Patrick McDonel, Ron Do, Tarjei S Mikkelsen,[...]. Cell 2016
173
12

Fast and efficient QTL mapper for thousands of molecular phenotypes.
Halit Ongen, Alfonso Buil, Andrew Anand Brown, Emmanouil T Dermitzakis, Olivier Delaneau. Bioinformatics 2016
191
12

Massively parallel reporter assays in cultured mammalian cells.
Alexandre Melnikov, Xiaolan Zhang, Peter Rogov, Li Wang, Tarjei S Mikkelsen. J Vis Exp 2014
28
12

motifbreakR: an R/Bioconductor package for predicting variant effects at transcription factor binding sites.
Simon G Coetzee, Gerhard A Coetzee, Dennis J Hazelett. Bioinformatics 2015
101
12

Caspase functions in cell death and disease.
David R McIlwain, Thorsten Berger, Tak W Mak. Cold Spring Harb Perspect Biol 2013
12


ASIP and TYR pigmentation variants associate with cutaneous melanoma and basal cell carcinoma.
Daniel F Gudbjartsson, Patrick Sulem, Simon N Stacey, Alisa M Goldstein, Thorunn Rafnar, Bardur Sigurgeirsson, Kristrun R Benediktsdottir, Kristin Thorisdottir, Rafn Ragnarsson, Steinunn G Sveinsdottir,[...]. Nat Genet 2008
238
12

Hypomethylation of a LINE-1 promoter activates an alternate transcript of the MET oncogene in bladders with cancer.
Erika M Wolff, Hyang-Min Byun, Han F Han, Shikhar Sharma, Peter W Nichols, Kimberly D Siegmund, Allen S Yang, Peter A Jones, Gangning Liang. PLoS Genet 2010
200
12

Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.
Katherine J Ransohoff, Wenting Wu, Hyunje G Cho, Harvind C Chahal, Yuan Lin, Hong-Ji Dai, Christopher I Amos, Jeffrey E Lee, Jean Y Tang, David A Hinds,[...]. Oncotarget 2017
35
12

The histone methyltransferase SETDB1 is recurrently amplified in melanoma and accelerates its onset.
Craig J Ceol, Yariv Houvras, Judit Jane-Valbuena, Steve Bilodeau, David A Orlando, Valentine Battisti, Lauriane Fritsch, William M Lin, Travis J Hollmann, Fabrizio Ferré,[...]. Nature 2011
363
12

Functional assessment of human coding mutations affecting skin pigmentation using zebrafish.
Zurab R Tsetskhladze, Victor A Canfield, Khai C Ang, Steven M Wentzel, Katherine P Reid, Arthur S Berg, Stephen L Johnson, Koichi Kawakami, Keith C Cheng. PLoS One 2012
40
12

Endoplasmic reticulum retention is a common defect associated with tyrosinase-negative albinism.
R Halaban, S Svedine, E Cheng, Y Smicun, R Aron, D N Hebert. Proc Natl Acad Sci U S A 2000
136
12

Conserved role of intragenic DNA methylation in regulating alternative promoters.
Alika K Maunakea, Raman P Nagarajan, Mikhail Bilenky, Tracy J Ballinger, Cletus D'Souza, Shaun D Fouse, Brett E Johnson, Chibo Hong, Cydney Nielsen, Yongjun Zhao,[...]. Nature 2010
12

Bayesian statistical methods for genetic association studies.
Matthew Stephens, David J Balding. Nat Rev Genet 2009
269
12

Annotation-free quantification of RNA splicing using LeafCutter.
Yang I Li, David A Knowles, Jack Humphrey, Alvaro N Barbeira, Scott P Dickinson, Hae Kyung Im, Jonathan K Pritchard. Nat Genet 2018
210
12

Epigenomic analysis detects widespread gene-body DNA hypomethylation in chronic lymphocytic leukemia.
Marta Kulis, Simon Heath, Marina Bibikova, Ana C Queirós, Alba Navarro, Guillem Clot, Alejandra Martínez-Trillos, Giancarlo Castellano, Isabelle Brun-Heath, Magda Pinyol,[...]. Nat Genet 2012
388
12


YY1 Is a Structural Regulator of Enhancer-Promoter Loops.
Abraham S Weintraub, Charles H Li, Alicia V Zamudio, Alla A Sigova, Nancy M Hannett, Daniel S Day, Brian J Abraham, Malkiel A Cohen, Behnam Nabet, Dennis L Buckley,[...]. Cell 2017
399
12

Identifying specific protein-DNA interactions using SILAC-based quantitative proteomics.
Cornelia G Spruijt, H Irem Baymaz, Michiel Vermeulen. Methods Mol Biol 2013
15
12

An interaction proteomics survey of transcription factor binding at recurrent TERT promoter mutations.
Matthew M Makowski, Esther Willems, Jun Fang, Jiyeon Choi, Tongwu Zhang, Pascal W T C Jansen, Kevin M Brown, Michiel Vermeulen. Proteomics 2016
33
12

Examining the Impact of Imputation Errors on Fine-Mapping Using DNA Methylation QTL as a Model Trait.
V Kartik Chundru, Riccardo E Marioni, James G D Prendergast, Costanza L Vallerga, Tian Lin, Allan J Beveridge, Jacob Gratten, David A Hume, Ian J Deary, Naomi R Wray,[...]. Genetics 2019
1
100

YY1 regulates melanocyte development and function by cooperating with MITF.
Juying Li, Jun S Song, Robert J A Bell, Thanh-Nga T Tran, Rizwan Haq, Huifei Liu, Kevin T Love, Robert Langer, Daniel G Anderson, Lionel Larue,[...]. PLoS Genet 2012
37
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.