A citation-based method for searching scientific literature

Arpita Saha, Vishal P Nanavaty, Bibo Li. J Mol Biol 2020
Times Cited: 7







List of co-cited articles
96 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Genome organization and DNA accessibility control antigenic variation in trypanosomes.
Laura S M Müller, Raúl O Cosentino, Konrad U Förstner, Julien Guizetti, Carolin Wedel, Noam Kaplan, Christian J Janzen, Panagiota Arampatzi, Jörg Vogel, Sascha Steinbiss,[...]. Nature 2018
49
85

Trypanosoma brucei RAP1 maintains telomere and subtelomere integrity by suppressing TERRA and telomeric RNA:DNA hybrids.
Vishal Nanavaty, Ranjodh Sandhu, Sanaa E Jehi, Unnati M Pandya, Bibo Li. Nucleic Acids Res 2017
27
71

Monoallelic expression and epigenetic inheritance sustained by a Trypanosoma brucei variant surface glycoprotein exclusion complex.
Joana Faria, Lucy Glover, Sebastian Hutchinson, Cordula Boehm, Mark C Field, David Horn. Nat Commun 2019
16
71

Ribonuclease H1-targeted R-loops in surface antigen gene expression sites can direct trypanosome immune evasion.
Emma Briggs, Kathryn Crouch, Leandro Lemgruber, Craig Lapsley, Richard McCulloch. PLoS Genet 2018
21
71

Evaluation of mechanisms that may generate DNA lesions triggering antigenic variation in African trypanosomes.
Marcelo Santos da Silva, Galadriel A Hovel-Miner, Emma M Briggs, Maria Carolina Elias, Richard McCulloch. PLoS Pathog 2018
12
57

RAP1 is essential for silencing telomeric variant surface glycoprotein genes in Trypanosoma brucei.
Xiaofeng Yang, Luisa M Figueiredo, Amin Espinal, Eiji Okubo, Bibo Li. Cell 2009
111
57


Suppression of subtelomeric VSG switching by Trypanosoma brucei TRF requires its TTAGGG repeat-binding activity.
Sanaa E Jehi, Xiaohua Li, Ranjodh Sandhu, Fei Ye, Imaan Benmerzouga, Mingjie Zhang, Yanxiang Zhao, Bibo Li. Nucleic Acids Res 2014
23
57

Trypanosoma brucei RAP1 Has Essential Functional Domains That Are Required for Different Protein Interactions.
Marjia Afrin, Hanadi Kishmiri, Ranjodh Sandhu, M A G Rabbani, Bibo Li. mSphere 2020
4
100


VEX1 controls the allelic exclusion required for antigenic variation in trypanosomes.
Lucy Glover, Sebastian Hutchinson, Sam Alsford, David Horn. Proc Natl Acad Sci U S A 2016
49
57

Trypanosoma brucei ribonuclease H2A is an essential R-loop processing enzyme whose loss causes DNA damage during transcription initiation and antigenic variation.
Emma Briggs, Kathryn Crouch, Leandro Lemgruber, Graham Hamilton, Craig Lapsley, Richard McCulloch. Nucleic Acids Res 2019
9
57

Trypanosome telomeres are protected by a homologue of mammalian TRF2.
Bibo Li, Amin Espinal, George A M Cross. Mol Cell Biol 2005
56
42


A yeast-endonuclease-generated DNA break induces antigenic switching in Trypanosoma brucei.
Catharine E Boothroyd, Oliver Dreesen, Tatyana Leonova, K Ina Ly, Luisa M Figueiredo, George A M Cross, F Nina Papavasiliou. Nature 2009
95
42

Capturing the variant surface glycoprotein repertoire (the VSGnome) of Trypanosoma brucei Lister 427.
George A M Cross, Hee-Sook Kim, Bill Wickstead. Mol Biochem Parasitol 2014
84
42


African trypanosomes expressing multiple VSGs are rapidly eliminated by the host immune system.
Francisco Aresta-Branco, Margarida Sanches-Vaz, Fabio Bento, João A Rodrigues, Luisa M Figueiredo. Proc Natl Acad Sci U S A 2019
5
60


Trypanosomal histone γH2A and the DNA damage response.
Lucy Glover, David Horn. Mol Biochem Parasitol 2012
60
42

Cohesin regulates VSG monoallelic expression in trypanosomes.
David Landeira, Jean-Mathieu Bart, Daria Van Tyne, Miguel Navarro. J Cell Biol 2009
55
42

TERRA RNA binding to TRF2 facilitates heterochromatin formation and ORC recruitment at telomeres.
Zhong Deng, Julie Norseen, Andreas Wiedmer, Harold Riethman, Paul M Lieberman. Mol Cell 2009
345
42

RNA polymerase I transcribes procyclin genes and variant surface glycoprotein gene expression sites in Trypanosoma brucei.
Arthur Günzl, Thomas Bruderer, Gabriele Laufer, Bernd Schimanski, Lan-Chun Tu, Hui-Min Chung, Pei-Tseng Lee, Mary Gwo-Shu Lee. Eukaryot Cell 2003
161
42


Identification of a novel base J binding protein complex involved in RNA polymerase II transcription termination in trypanosomes.
Rudo Kieft, Yang Zhang, Alexandre P Marand, Jose Dagoberto Moran, Robert Bridger, Lance Wells, Robert J Schmitz, Robert Sabatini. PLoS Genet 2020
7
42

Telomeric position effect: from the yeast paradigm to human pathologies?
Alexandre Ottaviani, Eric Gilson, Frédérique Magdinier. Biochimie 2008
98
42


Telomeric expression sites are highly conserved in Trypanosoma brucei.
Christiane Hertz-Fowler, Luisa M Figueiredo, Michael A Quail, Marion Becker, Andrew Jackson, Nathalie Bason, Karen Brooks, Carol Churcher, Samah Fahkro, Ian Goodhead,[...]. PLoS One 2008
172
42

Expanding an expanded genome: long-read sequencing of Trypanosoma cruzi.
Luisa Berná, Matias Rodriguez, María Laura Chiribao, Adriana Parodi-Talice, Sebastián Pita, Gastón Rijo, Fernando Alvarez-Valin, Carlos Robello. Microb Genom 2018
43
28

Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania.
Matthew B Rogers, James D Hilley, Nicholas J Dickens, Jon Wilkes, Paul A Bates, Daniel P Depledge, David Harris, Yerim Her, Pawel Herzyk, Hideo Imamura,[...]. Genome Res 2011
255
28





Position effect at S. cerevisiae telomeres: reversible repression of Pol II transcription.
D E Gottschling, O M Aparicio, B L Billington, V A Zakian. Cell 1990
28


Rap1 in Candida albicans: an unusual structural organization and a critical function in suppressing telomere recombination.
Eun Young Yu, Wei-Feng Yen, Olga Steinberg-Neifach, Neal F Lue. Mol Cell Biol 2010
29
28





The phosphoproteome of bloodstream form Trypanosoma brucei, causative agent of African sleeping sickness.
Isabelle R E Nett, David M A Martin, Diego Miranda-Saavedra, Douglas Lamont, Jonathan D Barber, Angela Mehlert, Michael A J Ferguson. Mol Cell Proteomics 2009
115
28



DNA Recombination Strategies During Antigenic Variation in the African Trypanosome.
Richard McCulloch, Liam J Morrison, James P J Hall. Microbiol Spectr 2015
40
28

Telomere length affects the frequency and mechanism of antigenic variation in Trypanosoma brucei.
Galadriel A Hovel-Miner, Catharine E Boothroyd, Monica Mugnier, Oliver Dreesen, George A M Cross, F Nina Papavasiliou. PLoS Pathog 2012
42
28

Hemizygous subtelomeres of an African trypanosome chromosome may account for over 75% of chromosome length.
Sergio Callejas, Vanessa Leech, Christopher Reitter, Sara Melville. Genome Res 2006
41
28

Trypanosoma brucei Orc1 is essential for nuclear DNA replication and affects both VSG silencing and VSG switching.
Imaan Benmerzouga, Jeniffer Concepción-Acevedo, Hee-Sook Kim, Anthula V Vandoros, George A M Cross, Michele M Klingbeil, Bibo Li. Mol Microbiol 2013
38
28

Genome-wide analysis reveals extensive functional interaction between DNA replication initiation and transcription in the genome of Trypanosoma brucei.
Calvin Tiengwe, Lucio Marcello, Helen Farr, Nicholas Dickens, Steven Kelly, Michal Swiderski, Diane Vaughan, Keith Gull, J David Barry, Stephen D Bell,[...]. Cell Rep 2012
62
28

GT-rich promoters can drive RNA pol II transcription and deposition of H2A.Z in African trypanosomes.
Carolin Wedel, Konrad U Förstner, Ramona Derr, T Nicolai Siegel. EMBO J 2017
30
28


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.