A citation-based method for searching scientific literature

Andrew Ransick, Nils O Lindström, Jing Liu, Qin Zhu, Jin-Jin Guo, Gregory F Alvarado, Albert D Kim, Hannah G Black, Junhyong Kim, Andrew P McMahon. Dev Cell 2019
Times Cited: 114







List of co-cited articles
747 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Single-cell transcriptomics of the mouse kidney reveals potential cellular targets of kidney disease.
Jihwan Park, Rojesh Shrestha, Chengxiang Qiu, Ayano Kondo, Shizheng Huang, Max Werth, Mingyao Li, Jonathan Barasch, Katalin Suszták. Science 2018
449
45


A single-nucleus RNA-sequencing pipeline to decipher the molecular anatomy and pathophysiology of human kidneys.
Blue B Lake, Song Chen, Masato Hoshi, Nongluk Plongthongkum, Diane Salamon, Amanda Knoten, Anitha Vijayan, Ramakrishna Venkatesh, Eric H Kim, Derek Gao,[...]. Nat Commun 2019
98
21

Transcriptomes of major renal collecting duct cell types in mouse identified by single-cell RNA-seq.
Lihe Chen, Jae Wook Lee, Chung-Lin Chou, Anil V Nair, Maria A Battistone, Teodor G Păunescu, Maria Merkulova, Sylvie Breton, Jill W Verlander, Susan M Wall,[...]. Proc Natl Acad Sci U S A 2017
132
21

Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
21

Conserved and Divergent Features of Mesenchymal Progenitor Cell Types within the Cortical Nephrogenic Niche of the Human and Mouse Kidney.
Nils O Lindström, Jinjin Guo, Albert D Kim, Tracy Tran, Qiuyu Guo, Guilherme De Sena Brandine, Andrew Ransick, Riana K Parvez, Matthew E Thornton, Laurence Baskin,[...]. J Am Soc Nephrol 2018
100
19

Single cell analysis of the developing mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk.
Alexander N Combes, Belinda Phipson, Kynan T Lawlor, Aude Dorison, Ralph Patrick, Luke Zappia, Richard P Harvey, Alicia Oshlack, Melissa H Little. Development 2019
59
30

Deep Sequencing in Microdissected Renal Tubules Identifies Nephron Segment-Specific Transcriptomes.
Jae Wook Lee, Chung-Lin Chou, Mark A Knepper. J Am Soc Nephrol 2015
325
17

Six2 defines and regulates a multipotent self-renewing nephron progenitor population throughout mammalian kidney development.
Akio Kobayashi, M Todd Valerius, Joshua W Mugford, Thomas J Carroll, Michelle Self, Guillermo Oliver, Andrew P McMahon. Cell Stem Cell 2008
611
17

Progressive Recruitment of Mesenchymal Progenitors Reveals a Time-Dependent Process of Cell Fate Acquisition in Mouse and Human Nephrogenesis.
Nils O Lindström, Guilherme De Sena Brandine, Tracy Tran, Andrew Ransick, Gio Suh, Jinjin Guo, Albert D Kim, Riana K Parvez, Seth W Ruffins, Elisabeth A Rutledge,[...]. Dev Cell 2018
91
18

The single-cell transcriptomic landscape of early human diabetic nephropathy.
Parker C Wilson, Haojia Wu, Yuhei Kirita, Kohei Uchimura, Nicolas Ledru, Helmut G Rennke, Paul A Welling, Sushrut S Waikar, Benjamin D Humphreys. Proc Natl Acad Sci U S A 2019
126
16

Renal-Tubule Epithelial Cell Nomenclature for Single-Cell RNA-Sequencing Studies.
Lihe Chen, Jevin Z Clark, Jonathan W Nelson, Brigitte Kaissling, David H Ellison, Mark A Knepper. J Am Soc Nephrol 2019
36
44

Single-cell analysis of progenitor cell dynamics and lineage specification in the human fetal kidney.
Rajasree Menon, Edgar A Otto, Austin Kokoruda, Jian Zhou, Zidong Zhang, Euisik Yoon, Yu-Chih Chen, Olga Troyanskaya, Jason R Spence, Matthias Kretzler,[...]. Development 2018
77
20

Single-Cell Transcriptomics of a Human Kidney Allograft Biopsy Specimen Defines a Diverse Inflammatory Response.
Haojia Wu, Andrew F Malone, Erinn L Donnelly, Yuhei Kirita, Kohei Uchimura, Sai M Ramakrishnan, Joseph P Gaut, Benjamin D Humphreys. J Am Soc Nephrol 2018
156
16

Integrating single-cell transcriptomic data across different conditions, technologies, and species.
Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
16

Comparative Analysis and Refinement of Human PSC-Derived Kidney Organoid Differentiation with Single-Cell Transcriptomics.
Haojia Wu, Kohei Uchimura, Erinn L Donnelly, Yuhei Kirita, Samantha A Morris, Benjamin D Humphreys. Cell Stem Cell 2018
229
15

Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors.
Matthew D Young, Thomas J Mitchell, Felipe A Vieira Braga, Maxine G B Tran, Benjamin J Stewart, John R Ferdinand, Grace Collord, Rachel A Botting, Dorin-Mirel Popescu, Kevin W Loudon,[...]. Science 2018
255
14



Spatiotemporal immune zonation of the human kidney.
Benjamin J Stewart, John R Ferdinand, Matthew D Young, Thomas J Mitchell, Kevin W Loudon, Alexandra M Riding, Nathan Richoz, Gordon L Frazer, Joy U L Staniforth, Felipe A Vieira Braga,[...]. Science 2019
129
13

Visualization and analysis of gene expression in tissue sections by spatial transcriptomics.
Patrik L Ståhl, Fredrik Salmén, Sanja Vickovic, Anna Lundmark, José Fernández Navarro, Jens Magnusson, Stefania Giacomello, Michaela Asp, Jakub O Westholm, Mikael Huss,[...]. Science 2016
758
13

Single-cell analysis reveals congruence between kidney organoids and human fetal kidney.
Alexander N Combes, Luke Zappia, Pei Xuan Er, Alicia Oshlack, Melissa H Little. Genome Med 2019
84
15

Cell profiling of mouse acute kidney injury reveals conserved cellular responses to injury.
Yuhei Kirita, Haojia Wu, Kohei Uchimura, Parker C Wilson, Benjamin D Humphreys. Proc Natl Acad Sci U S A 2020
89
14

Single cell census of human kidney organoids shows reproducibility and diminished off-target cells after transplantation.
Ayshwarya Subramanian, Eriene-Heidi Sidhom, Maheswarareddy Emani, Katherine Vernon, Nareh Sahakian, Yiming Zhou, Maria Kost-Alimova, Michal Slyper, Julia Waldman, Danielle Dionne,[...]. Nat Commun 2019
60
20

Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development.
Mazène Hochane, Patrick R van den Berg, Xueying Fan, Noémie Bérenger-Currias, Esmée Adegeest, Monika Bialecka, Maaike Nieveen, Maarten Menschaart, Susana M Chuva de Sousa Lopes, Stefan Semrau. PLoS Biol 2019
57
21

Kidney organoids from human iPS cells contain multiple lineages and model human nephrogenesis.
Minoru Takasato, Pei X Er, Han S Chiu, Barbara Maier, Gregory J Baillie, Charles Ferguson, Robert G Parton, Ernst J Wolvetang, Matthias S Roost, Susana M Chuva de Sousa Lopes,[...]. Nature 2015
713
11

Slide-seq: A scalable technology for measuring genome-wide expression at high spatial resolution.
Samuel G Rodriques, Robert R Stickels, Aleksandrina Goeva, Carly A Martin, Evan Murray, Charles R Vanderburg, Joshua Welch, Linlin M Chen, Fei Chen, Evan Z Macosko. Science 2019
539
11

Global quantification of tissue dynamics in the developing mouse kidney.
Kieran M Short, Alexander N Combes, James Lefevre, Adler L Ju, Kylie M Georgas, Timothy Lamberton, Oliver Cairncross, Bree A Rumballe, Andrew P McMahon, Nicholas A Hamilton,[...]. Dev Cell 2014
163
10

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
10

A Single-Cell Transcriptome Atlas of the Mouse Glomerulus.
Nikos Karaiskos, Mahdieh Rahmatollahi, Anastasiya Boltengagen, Haiyue Liu, Martin Hoehne, Markus Rinschen, Bernhard Schermer, Thomas Benzing, Nikolaus Rajewsky, Christine Kocks,[...]. J Am Soc Nephrol 2018
82
12

Single-Cell RNA Profiling of Glomerular Cells Shows Dynamic Changes in Experimental Diabetic Kidney Disease.
Jia Fu, Kemal M Akat, Zeguo Sun, Weijia Zhang, Detlef Schlondorff, Zhihong Liu, Thomas Tuschl, Kyung Lee, John Cijiang He. J Am Soc Nephrol 2019
63
15

The orchestrated cellular and molecular responses of the kidney to endotoxin define a precise sepsis timeline.
Danielle Janosevic, Jered Myslinski, Thomas W McCarthy, Amy Zollman, Farooq Syed, Xiaoling Xuei, Hongyu Gao, Yun-Long Liu, Kimberly S Collins, Ying-Hua Cheng,[...]. Elife 2021
21
47

Single cell transcriptional and chromatin accessibility profiling redefine cellular heterogeneity in the adult human kidney.
Yoshiharu Muto, Parker C Wilson, Nicolas Ledru, Haojia Wu, Henrik Dimke, Sushrut S Waikar, Benjamin D Humphreys. Nat Commun 2021
44
22

Decoding myofibroblast origins in human kidney fibrosis.
Christoph Kuppe, Mahmoud M Ibrahim, Jennifer Kranz, Xiaoting Zhang, Susanne Ziegler, Javier Perales-Patón, Jitske Jansen, Katharina C Reimer, James R Smith, Ross Dobie,[...]. Nature 2021
110
10

Single cell regulatory landscape of the mouse kidney highlights cellular differentiation programs and disease targets.
Zhen Miao, Michael S Balzer, Ziyuan Ma, Hongbo Liu, Junnan Wu, Rojesh Shrestha, Tamas Aranyi, Amy Kwan, Ayano Kondo, Marco Pontoglio,[...]. Nat Commun 2021
29
34

Development of the Mammalian Kidney.
Andrew P McMahon. Curr Top Dev Biol 2016
119
9

Representation and relative abundance of cell-type selective markers in whole-kidney RNA-Seq data.
Jevin Z Clark, Lihe Chen, Chung-Lin Chou, Hyun Jun Jung, Jae Wook Lee, Mark A Knepper. Kidney Int 2019
43
20

Redefining the in vivo origin of metanephric nephron progenitors enables generation of complex kidney structures from pluripotent stem cells.
Atsuhiro Taguchi, Yusuke Kaku, Tomoko Ohmori, Sazia Sharmin, Minetaro Ogawa, Hiroshi Sasaki, Ryuichi Nishinakamura. Cell Stem Cell 2014
451
9

Nephron organoids derived from human pluripotent stem cells model kidney development and injury.
Ryuji Morizane, Albert Q Lam, Benjamin S Freedman, Seiji Kishi, M Todd Valerius, Joseph V Bonventre. Nat Biotechnol 2015
423
9

Conserved and Divergent Features of Human and Mouse Kidney Organogenesis.
Nils O Lindström, Jill A McMahon, Jinjin Guo, Tracy Tran, Qiuyu Guo, Elisabeth Rutledge, Riana K Parvez, Gohar Saribekyan, Robert E Schuler, Christopher Liao,[...]. J Am Soc Nephrol 2018
106
9

Targeted Single-Cell RNA-seq Identifies Minority Cell Types of Kidney Distal Nephron.
Lihe Chen, Chun-Lin Chou, Mark A Knepper. J Am Soc Nephrol 2021
19
47

Single-cell RNA sequencing of human kidney.
Jinling Liao, Zhenyuan Yu, Yang Chen, Mengying Bao, Chunlin Zou, Haiying Zhang, Deyun Liu, Tianyu Li, Qingyun Zhang, Jiaping Li,[...]. Sci Data 2020
62
12

Dissecting the Global Dynamic Molecular Profiles of Human Fetal Kidney Development by Single-Cell RNA Sequencing.
Ping Wang, Yidong Chen, Jun Yong, Yueli Cui, Rui Wang, Lu Wen, Jie Qiao, Fuchou Tang. Cell Rep 2018
60
13

In Vivo Developmental Trajectories of Human Podocyte Inform In Vitro Differentiation of Pluripotent Stem Cell-Derived Podocytes.
Tracy Tran, Nils O Lindström, Andrew Ransick, Guilherme De Sena Brandine, Qiuyu Guo, Albert D Kim, Balint Der, Janos Peti-Peterdi, Andrew D Smith, Matthew Thornton,[...]. Dev Cell 2019
27
29

RNA velocity of single cells.
Gioele La Manno, Ruslan Soldatov, Amit Zeisel, Emelie Braun, Hannah Hochgerner, Viktor Petukhov, Katja Lidschreiber, Maria E Kastriti, Peter Lönnerberg, Alessandro Furlan,[...]. Nature 2018
938
8

Quantitative Proteomics of All 14 Renal Tubule Segments in Rat.
Kavee Limbutara, Chung-Lin Chou, Mark A Knepper. J Am Soc Nephrol 2020
46
17

A Comprehensive Map of mRNAs and Their Isoforms across All 14 Renal Tubule Segments of Mouse.
Lihe Chen, Chun-Lin Chou, Mark A Knepper. J Am Soc Nephrol 2021
29
27

Conserved and Divergent Molecular and Anatomic Features of Human and Mouse Nephron Patterning.
Nils O Lindström, Tracy Tran, Jinjin Guo, Elisabeth Rutledge, Riana K Parvez, Matthew E Thornton, Brendan Grubbs, Jill A McMahon, Andrew P McMahon. J Am Soc Nephrol 2018
66
12

Single-Cell Transcriptome Profiling of the Kidney Glomerulus Identifies Key Cell Types and Reactions to Injury.
Jun-Jae Chung, Leonard Goldstein, Ying-Jiun J Chen, Jiyeon Lee, Joshua D Webster, Merone Roose-Girma, Sharad C Paudyal, Zora Modrusan, Anwesha Dey, Andrey S Shaw. J Am Soc Nephrol 2020
35
22

Cessation of renal morphogenesis in mice.
Heather A Hartman, Hsiao L Lai, Larry T Patterson. Dev Biol 2007
208
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.