A citation-based method for searching scientific literature

Nadine Dreser, Katrin Madjar, Anna-Katharina Holzer, Marion Kapitza, Christopher Scholz, Petra Kranaster, Simon Gutbier, Stefanie Klima, David Kolb, Christian Dietz, Timo Trefzer, Johannes Meisig, Christoph van Thriel, Margit Henry, Michael R Berthold, Nils Blüthgen, Agapios Sachinidis, Jörg Rahnenführer, Jan G Hengstler, Tanja Waldmann, Marcel Leist. Arch Toxicol 2020
Times Cited: 18







List of co-cited articles
152 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Human embryonic stem cell-derived test systems for developmental neurotoxicity: a transcriptomics approach.
Anne K Krug, Raivo Kolde, John A Gaspar, Eugen Rempel, Nina V Balmer, Kesavan Meganathan, Kinga Vojnits, Mathurin Baquié, Tanja Waldmann, Roberto Ensenat-Waser,[...]. Arch Toxicol 2013
163
55

Definition of transcriptome-based indices for quantitative characterization of chemically disturbed stem cell development: introduction of the STOP-Toxukn and STOP-Toxukk tests.
Vaibhav Shinde, Lisa Hoelting, Sureshkumar Perumal Srinivasan, Johannes Meisig, Kesavan Meganathan, Smita Jagtap, Marianna Grinberg, Julia Liebing, Nils Bluethgen, Jörg Rahnenführer,[...]. Arch Toxicol 2017
37
50

A transcriptome-based classifier to identify developmental toxicants by stem cell testing: design, validation and optimization for histone deacetylase inhibitors.
Eugen Rempel, Lisa Hoelting, Tanja Waldmann, Nina V Balmer, Stefan Schildknecht, Marianna Grinberg, John Antony Das Gaspar, Vaibhav Shinde, Regina Stöber, Rosemarie Marchan,[...]. Arch Toxicol 2015
65
38

Stem Cell Transcriptome Responses and Corresponding Biomarkers That Indicate the Transition from Adaptive Responses to Cytotoxicity.
Tanja Waldmann, Marianna Grinberg, André König, Eugen Rempel, Stefan Schildknecht, Margit Henry, Anna-Katharina Holzer, Nadine Dreser, Vaibhav Shinde, Agapios Sachinidis,[...]. Chem Res Toxicol 2017
34
38

Stem Cell-Derived Immature Human Dorsal Root Ganglia Neurons to Identify Peripheral Neurotoxicants.
Lisa Hoelting, Stefanie Klima, Christiaan Karreman, Marianna Grinberg, Johannes Meisig, Margit Henry, Tamara Rotshteyn, Jörg Rahnenführer, Nils Blüthgen, Agapios Sachinidis,[...]. Stem Cells Transl Med 2016
44
38

Comparison of a teratogenic transcriptome-based predictive test based on human embryonic versus inducible pluripotent stem cells.
Vaibhav Shinde, Sureshkumar Perumal Srinivasan, Margit Henry, Tamara Rotshteyn, Jürgen Hescheler, Jörg Rahnenführer, Marianna Grinberg, Johannes Meisig, Nils Blüthgen, Tanja Waldmann,[...]. Stem Cell Res Ther 2016
26
33

Recommendation on test readiness criteria for new approach methods in toxicology: Exemplified for developmental neurotoxicity.
Anna Bal-Price, Helena T Hogberg, Kevin M Crofton, Mardas Daneshian, Rex E FitzGerald, Ellen Fritsche, Tuula Heinonen, Susanne Hougaard Bennekou, Stefanie Klima, Aldert H Piersma,[...]. ALTEX 2018
85
33

Design principles of concentration-dependent transcriptome deviations in drug-exposed differentiating stem cells.
Tanja Waldmann, Eugen Rempel, Nina V Balmer, André König, Raivo Kolde, John Antonydas Gaspar, Margit Henry, Jürgen Hescheler, Agapios Sachinidis, Jörg Rahnenführer,[...]. Chem Res Toxicol 2014
80
33

A high-throughput approach to identify specific neurotoxicants/ developmental toxicants in human neuronal cell function assays.
Johannes Delp, Simon Gutbier, Stefanie Klima, Lisa Hoelting, Kevin Pinto-Gil, Jui-Hua Hsieh, Michael Aichem, Karsten Klein, Falk Schreiber, Raymond R Tice,[...]. ALTEX 2018
28
27

Identification of transcriptome signatures and biomarkers specific for potential developmental toxicants inhibiting human neural crest cell migration.
Giorgia Pallocca, Marianna Grinberg, Margit Henry, Tancred Frickey, Jan G Hengstler, Tanja Waldmann, Agapios Sachinidis, Jörg Rahnenführer, Marcel Leist. Arch Toxicol 2016
32
27

Rapid, complete and large-scale generation of post-mitotic neurons from the human LUHMES cell line.
Diana Scholz, Dominik Pöltl, Andreas Genewsky, Matthias Weng, Tanja Waldmann, Stefan Schildknecht, Marcel Leist. J Neurochem 2011
191
27

Reference compounds for alternative test methods to indicate developmental neurotoxicity (DNT) potential of chemicals: example lists and criteria for their selection and use.
Michael Aschner, Sandra Ceccatelli, Mardas Daneshian, Ellen Fritsche, Nina Hasiwa, Thomas Hartung, Helena T Hogberg, Marcel Leist, Abby Li, William R Mundi,[...]. ALTEX 2017
82
27

A human induced pluripotent stem cell-based in vitro assay predicts developmental toxicity through a retinoic acid receptor-mediated pathway for a series of related retinoid analogues.
Jessica A Palmer, Alan M Smith, Laura A Egnash, Michael R Colwell, Elizabeth L R Donley, Fred R Kirchner, Robert E Burrier. Reprod Toxicol 2017
23
27


Establishment and assessment of a new human embryonic stem cell-based biomarker assay for developmental toxicity screening.
Jessica A Palmer, Alan M Smith, Laura A Egnash, Kevin R Conard, Paul R West, Robert E Burrier, Elizabeth L R Donley, Fred R Kirchner. Birth Defects Res B Dev Reprod Toxicol 2013
50
27

From transient transcriptome responses to disturbed neurodevelopment: role of histone acetylation and methylation as epigenetic switch between reversible and irreversible drug effects.
Nina V Balmer, Stefanie Klima, Eugen Rempel, Violeta N Ivanova, Raivo Kolde, Matthias K Weng, Kesavan Meganathan, Margit Henry, Agapios Sachinidis, Michael R Berthold,[...]. Arch Toxicol 2014
61
22

Adverse outcome pathways: opportunities, limitations and open questions.
Marcel Leist, Ahmed Ghallab, Rabea Graepel, Rosemarie Marchan, Reham Hassan, Susanne Hougaard Bennekou, Alice Limonciel, Mathieu Vinken, Stefan Schildknecht, Tanja Waldmann,[...]. Arch Toxicol 2017
202
22

OECD/EFSA workshop on developmental neurotoxicity (DNT): The use of non-animal test methods for regulatory purposes.
Ellen Fritsche, Kevin M Crofton, Antonio F Hernandez, Susanne Hougaard Bennekou, Marcel Leist, Anna Bal-Price, Elissa Reaves, Martin F Wilks, Andrea Terron, Roland Solecki,[...]. ALTEX 2017
57
22

Progressive degeneration of human mesencephalic neuron-derived cells triggered by dopamine-dependent oxidative stress is dependent on the mixed-lineage kinase pathway.
Julie Lotharius, Jeppe Falsig, Johan van Beek, Sarah Payne, Ralf Dringen, Patrik Brundin, Marcel Leist. J Neurosci 2005
179
22

Human Pluripotent Stem Cell Based Developmental Toxicity Assays for Chemical Safety Screening and Systems Biology Data Generation.
Vaibhav Shinde, Stefanie Klima, Perumal Srinivasan Sureshkumar, Kesavan Meganathan, Smita Jagtap, Eugen Rempel, Jörg Rahnenführer, Jan Georg Hengstler, Tanja Waldmann, Jürgen Hescheler,[...]. J Vis Exp 2015
37
22

Consensus report on the future of animal-free systemic toxicity testing.
Marcel Leist, Nina Hasiwa, Costanza Rovida, Mardas Daneshian, David Basketter, Ian Kimber, Harvey Clewell, Tilman Gocht, Alan Goldberg, Francois Busquet,[...]. ALTEX 2014
95
22

Determination of benchmark concentrations and their statistical uncertainty for cytotoxicity test data and functional in vitro assays.
Alice Krebs, Johanna Nyffeler, Christiaan Karreman, Béla Z Schmidt, Franziska Kappenberg, Jan Mellert, Giorgia Pallocca, Manuel Pastor, Jörg Rahnenführer, Marcel Leist. ALTEX 2020
9
44

Template for the description of cell-based toxicological test methods to allow evaluation and regulatory use of the data.
Alice Krebs, Tanja Waldmann, Martin F Wilks, Barbara M A Van Vugt-Lussenburg, Bart Van der Burg, Andrea Terron, Thomas Steger-Hartmann, Joelle Ruegg, Costanza Rovida, Emma Pedersen,[...]. ALTEX 2019
24
22

A high-throughput screen for teratogens using human pluripotent stem cells.
Sei Kameoka, Joshua Babiarz, Kyle Kolaja, Eric Chiao. Toxicol Sci 2014
45
22

The EU-ToxRisk method documentation, data processing and chemical testing pipeline for the regulatory use of new approach methods.
Alice Krebs, Barbara M A van Vugt-Lussenburg, Tanja Waldmann, Wiebke Albrecht, Jan Boei, Bas Ter Braak, Maja Brajnik, Thomas Braunbeck, Tim Brecklinghaus, Francois Busquet,[...]. Arch Toxicol 2020
8
50

Major changes of cell function and toxicant sensitivity in cultured cells undergoing mild, quasi-natural genetic drift.
Simon Gutbier, Patrick May, Sylvie Berthelot, Abhimanyu Krishna, Timo Trefzer, Mehri Behbehani, Liudmila Efremova, Johannes Delp, Gerhard Gstraunthaler, Tanja Waldmann,[...]. Arch Toxicol 2018
15
26



Comparative performance analysis of human iPSC-derived and primary neural progenitor cells (NPC) grown as neurospheres in vitro.
Maxi Hofrichter, Laura Nimtz, Julia Tigges, Yaschar Kabiri, Friederike Schröter, Brigitte Royer-Pokora, Barbara Hildebrandt, Martin Schmuck, Alexey Epanchintsev, Stephan Theiss,[...]. Stem Cell Res 2017
39
22


Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
22

The validated embryonic stem cell test to predict embryotoxicity in vitro.
Andrea E M Seiler, Horst Spielmann. Nat Protoc 2011
167
16

Prediction of human drug-induced liver injury (DILI) in relation to oral doses and blood concentrations.
Wiebke Albrecht, Franziska Kappenberg, Tim Brecklinghaus, Regina Stoeber, Rosemarie Marchan, Mian Zhang, Kristina Ebbert, Hendrik Kirschner, Marianna Grinberg, Marcel Leist,[...]. Arch Toxicol 2019
60
16

Road Map for Development of Stem Cell-Based Alternative Test Methods.
Agapios Sachinidis, Wiebke Albrecht, Patrick Nell, Anna Cherianidou, Nicola J Hewitt, Karolina Edlund, Jan G Hengstler. Trends Mol Med 2019
31
16

Evaluation of a human neurite growth assay as specific screen for developmental neurotoxicants.
Anne K Krug, Nina V Balmer, Florian Matt, Felix Schönenberger, Dorit Merhof, Marcel Leist. Arch Toxicol 2013
99
16

Dynamic imaging of adaptive stress response pathway activation for prediction of drug induced liver injury.
Steven Wink, Steven W Hiemstra, Suzanne Huppelschoten, Janna E Klip, Bob van de Water. Arch Toxicol 2018
38
16

The Next Generation Blueprint of Computational Toxicology at the U.S. Environmental Protection Agency.
Russell S Thomas, Tina Bahadori, Timothy J Buckley, John Cowden, Chad Deisenroth, Kathie L Dionisio, Jeffrey B Frithsen, Christopher M Grulke, Maureen R Gwinn, Joshua A Harrill,[...]. Toxicol Sci 2019
138
16

Highlight report: Launch of a large integrated European in vitro toxicology project: EU-ToxRisk.
Mardas Daneshian, Hennicke Kamp, Jan Hengstler, Marcel Leist, Bob van de Water. Arch Toxicol 2016
35
16

Animal testing and its alternatives - the most important omics is economics.
Lucy Meigs, Lena Smirnova, Costanza Rovida, Marcel Leist, Thomas Hartung. ALTEX 2018
54
16

Development of a neurotoxicity assay that is tuned to detect mitochondrial toxicants.
Johannes Delp, Melina Funke, Franziska Rudolf, Andrea Cediel, Susanne Hougaard Bennekou, Wanda van der Stel, Giada Carta, Paul Jennings, Cosimo Toma, Iain Gardner,[...]. Arch Toxicol 2019
21
16

Normalization of data for viability and relative cell function curves.
Alice Krebs, Johanna Nyffeler, Jörg Rahnenführer, Marcel Leist. ALTEX 2018
11
27

In vitro acute and developmental neurotoxicity screening: an overview of cellular platforms and high-throughput technical possibilities.
Béla Z Schmidt, Martin Lehmann, Simon Gutbier, Erastus Nembo, Sabrina Noel, Lena Smirnova, Anna Forsby, Jürgen Hescheler, Hasan X Avci, Thomas Hartung,[...]. Arch Toxicol 2017
83
16

Towards grouping concepts based on new approach methodologies in chemical hazard assessment: the read-across approach of the EU-ToxRisk project.
Sylvia E Escher, Hennicke Kamp, Susanne H Bennekou, Annette Bitsch, Ciarán Fisher, Rabea Graepel, Jan G Hengstler, Matthias Herzler, Derek Knight, Marcel Leist,[...]. Arch Toxicol 2019
37
16

Screening for Developmental Neurotoxicity at the National Toxicology Program: The Future Is Here.
Mamta Behl, Kristen Ryan, Jui-Hua Hsieh, Frederick Parham, Andrew J Shapiro, Bradley J Collins, Nisha S Sipes, Linda S Birnbaum, John R Bucher, Paul M D Foster,[...]. Toxicol Sci 2019
18
16

Developmental toxicity testing in the 21st century: the sword of Damocles shattered by embryonic stem cell assays?
Andrea Seiler, Michael Oelgeschläger, Manfred Liebsch, Ralph Pirow, Christian Riebeling, Tewes Tralau, Andreas Luch. Arch Toxicol 2011
19
16

Embryonic stem cell lines derived from human blastocysts.
J A Thomson, J Itskovitz-Eldor, S S Shapiro, M A Waknitz, J J Swiergiel, V S Marshall, J M Jones. Science 1998
16

Functional cardiotoxicity assessment of cosmetic compounds using human-induced pluripotent stem cell-derived cardiomyocytes.
Umesh Chaudhari, Harshal Nemade, Poornima Sureshkumar, Mathieu Vinken, Gamze Ates, Vera Rogiers, Jürgen Hescheler, Jan Georg Hengstler, Agapios Sachinidis. Arch Toxicol 2018
25
16

Test systems of developmental toxicity: state-of-the art and future perspectives.
Marcel Leist, Annette Ringwald, Raivo Kolde, Susanne Bremer, Christoph van Thriel, Karl-Heinz Krause, Jörg Rahnenführer, Agapios Sachinidis, Jürgen Hescheler, Jan G Hengstler. Arch Toxicol 2013
23
16

Induced pluripotent stem cell lines derived from human somatic cells.
Junying Yu, Maxim A Vodyanik, Kim Smuga-Otto, Jessica Antosiewicz-Bourget, Jennifer L Frane, Shulan Tian, Jeff Nie, Gudrun A Jonsdottir, Victor Ruotti, Ron Stewart,[...]. Science 2007
16



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.