A citation-based method for searching scientific literature

Arijit Ghosh, Sangheeta Bhattacharjee, Srijita Paul Chowdhuri, Abhik Mallick, Ishita Rehman, Sudipta Basu, Benu Brata Das. Sci Adv 2019
Times Cited: 23







List of co-cited articles
192 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Role of tyrosyl-DNA phosphodiesterase (TDP1) in mitochondria.
Benu Brata Das, Thomas S Dexheimer, Kasthuraiah Maddali, Yves Pommier. Proc Natl Acad Sci U S A 2010
98
30

PRMT5-mediated arginine methylation of TDP1 for the repair of topoisomerase I covalent complexes.
Ishita Rehman, Suparna M Basu, Subhendu K Das, Sangheeta Bhattacharjee, Arijit Ghosh, Yves Pommier, Benu Brata Das. Nucleic Acids Res 2018
34
26

Tyrosyl-DNA-phosphodiesterases (TDP1 and TDP2).
Yves Pommier, Shar-yin N Huang, Rui Gao, Benu Brata Das, Junko Murai, Christophe Marchand. DNA Repair (Amst) 2014
178
26

Poly(ADP-ribose) polymers regulate DNA topoisomerase I (Top1) nuclear dynamics and camptothecin sensitivity in living cells.
Subhendu K Das, Ishita Rehman, Arijit Ghosh, Souvik Sengupta, Papiya Majumdar, Biman Jana, Benu Brata Das. Nucleic Acids Res 2016
36
21

Roles of eukaryotic topoisomerases in transcription, replication and genomic stability.
Yves Pommier, Yilun Sun, Shar-Yin N Huang, John L Nitiss. Nat Rev Mol Cell Biol 2016
408
21

Mutation of TDP1, encoding a topoisomerase I-dependent DNA damage repair enzyme, in spinocerebellar ataxia with axonal neuropathy.
Hiroshi Takashima, Cornelius F Boerkoel, Joy John, Gulam Mustafa Saifi, Mustafa A M Salih, Dawna Armstrong, Yuxin Mao, Florante A Quiocho, Benjamin B Roa, Masanori Nakagawa,[...]. Nat Genet 2002
369
21

Single-strand break repair and genetic disease.
Keith W Caldecott. Nat Rev Genet 2008
608
21

A human 5'-tyrosyl DNA phosphodiesterase that repairs topoisomerase-mediated DNA damage.
Felipe Cortes Ledesma, Sherif F El Khamisy, Maria C Zuma, Kay Osborn, Keith W Caldecott. Nature 2009
266
17

Tyrosyl-DNA phosphodiesterases: rescuing the genome from the risks of relaxation.
Ajinkya S Kawale, Lawrence F Povirk. Nucleic Acids Res 2018
49
17

Mitochondrial protein-linked DNA breaks perturb mitochondrial gene transcription and trigger free radical-induced DNA damage.
Shih-Chieh Chiang, Martin Meagher, Nick Kassouf, Majid Hafezparast, Peter J McKinnon, Rachel Haywood, Sherif F El-Khamisy. Sci Adv 2017
37
17

TDP1 facilitates chromosomal single-strand break repair in neurons and is neuroprotective in vivo.
Sachin Katyal, Sherif F el-Khamisy, Helen R Russell, Yang Li, Limei Ju, Keith W Caldecott, Peter J McKinnon. EMBO J 2007
152
17


PARP1-TDP1 coupling for the repair of topoisomerase I-induced DNA damage.
Benu Brata Das, Shar-yin N Huang, Junko Murai, Ishita Rehman, Jean-Christophe Amé, Souvik Sengupta, Subhendu K Das, Papiya Majumdar, Hongliang Zhang, Denis Biard,[...]. Nucleic Acids Res 2014
124
17

Optimal function of the DNA repair enzyme TDP1 requires its phosphorylation by ATM and/or DNA-PK.
Benu Brata Das, Smitha Antony, Shalu Gupta, Thomas S Dexheimer, Christophe E Redon, Susan Garfield, Yosef Shiloh, Yves Pommier. EMBO J 2009
106
17

Mitochondria and cancer.
Douglas C Wallace. Nat Rev Cancer 2012
17

Defective DNA single-strand break repair in spinocerebellar ataxia with axonal neuropathy-1.
Sherif F El-Khamisy, Gulam M Saifi, Michael Weinfeld, Fredrik Johansson, Thomas Helleday, James R Lupski, Keith W Caldecott. Nature 2005
324
17

Role of polynucleotide kinase/phosphatase in mitochondrial DNA repair.
Nasser Tahbaz, Sudip Subedi, Michael Weinfeld. Nucleic Acids Res 2012
57
17

Maintenance and Expression of Mammalian Mitochondrial DNA.
Claes M Gustafsson, Maria Falkenberg, Nils-Göran Larsson. Annu Rev Biochem 2016
283
13

Cross-strand binding of TFAM to a single mtDNA molecule forms the mitochondrial nucleoid.
Christian Kukat, Karen M Davies, Christian A Wurm, Henrik Spåhr, Nina A Bonekamp, Inge Kühl, Friederike Joos, Paola Loguercio Polosa, Chan Bae Park, Viktor Posse,[...]. Proc Natl Acad Sci U S A 2015
179
13

DNA damage related crosstalk between the nucleus and mitochondria.
Mohammad Saki, Aishwarya Prakash. Free Radic Biol Med 2017
70
13

Mitochondrial DNA damage induced autophagy, cell death, and disease.
Bennett Van Houten, Senyene E Hunter, Joel N Meyer. Front Biosci (Landmark Ed) 2016
86
13

Oxidative stress induces degradation of mitochondrial DNA.
Inna Shokolenko, Natalia Venediktova, Alexandra Bochkareva, Glenn L Wilson, Mikhail F Alexeyev. Nucleic Acids Res 2009
305
13

Mitochondria and Cancer.
Sejal Vyas, Elma Zaganjor, Marcia C Haigis. Cell 2016
719
13


Mitochondrial tyrosyl-DNA phosphodiesterase 2 and its TDP2S short isoform.
Shar-Yin N Huang, Ilaria Dalla Rosa, Stephanie A Michaels, David V Tulumello, Keli Agama, Salim Khiati, Sae Rin Jean, Simone A Baechler, Valentina M Factor, Sudhir Varma,[...]. EMBO Rep 2018
10
30

Ubiquitin stimulated reversal of topoisomerase 2 DNA-protein crosslinks by TDP2.
Matthew J Schellenberg, C Denise Appel, Amanda A Riccio, Logan R Butler, Juno M Krahn, Jenna A Liebermann, Felipe Cortés-Ledesma, R Scott Williams. Nucleic Acids Res 2020
7
42

ZATT (ZNF451)-mediated resolution of topoisomerase 2 DNA-protein cross-links.
Matthew J Schellenberg, Jenna Ariel Lieberman, Andrés Herrero-Ruiz, Logan R Butler, Jason G Williams, Ana M Muñoz-Cabello, Geoffrey A Mueller, Robert E London, Felipe Cortés-Ledesma, R Scott Williams. Science 2017
71
13

Construction of Polynuclear Lanthanide (Ln = Dy(III), Tb(III), and Nd(III)) Cage Complexes Using Pyridine-Pyrazole-Based Ligands: Versatile Molecular Topologies and SMM Behavior.
Sukhen Bala, Mousumi Sen Bishwas, Bhaskar Pramanik, Sumit Khanra, Katharina M Fromm, Pankaj Poddar, Raju Mondal. Inorg Chem 2015
23
13

Mitochondrial form and function.
Jonathan R Friedman, Jodi Nunnari. Nature 2014
794
13

Mitochondrial metabolism and cancer.
Paolo Ettore Porporato, Nicoletta Filigheddu, José Manuel Bravo-San Pedro, Guido Kroemer, Lorenzo Galluzzi. Cell Res 2018
409
13

DNA strand break repair and human genetic disease.
Peter J McKinnon, Keith W Caldecott. Annu Rev Genomics Hum Genet 2007
199
13


Topoisomerase-mediated chromosomal break repair: an emerging player in many games.
Mohamed E Ashour, Reham Atteya, Sherif F El-Khamisy. Nat Rev Cancer 2015
105
13

Type I DNA Topoisomerases.
Giovanni Capranico, Jessica Marinello, Giovanni Chillemi. J Med Chem 2017
58
13

Human Tdp1 cleaves a broad spectrum of substrates, including phosphoamide linkages.
Heidrun Interthal, Hong Jing Chen, James J Champoux. J Biol Chem 2005
160
13

A eukaryotic enzyme that can disjoin dead-end covalent complexes between DNA and type I topoisomerases.
S W Yang, A B Burgin, B N Huizenga, C A Robertson, K C Yao, H A Nash. Proc Natl Acad Sci U S A 1996
303
13


RAD51C/XRCC3 Facilitates Mitochondrial DNA Replication and Maintains Integrity of the Mitochondrial Genome.
Anup Mishra, Sneha Saxena, Anjali Kaushal, Ganesh Nagaraju. Mol Cell Biol 2018
28
13


Increased negative supercoiling of mtDNA in TOP1mt knockout mice and presence of topoisomerases IIα and IIβ in vertebrate mitochondria.
Hongliang Zhang, Yong-Wei Zhang, Takehiro Yasukawa, Ilaria Dalla Rosa, Salim Khiati, Yves Pommier. Nucleic Acids Res 2014
49
13

Mitochondrial topoisomerase I is critical for mitochondrial integrity and cellular energy metabolism.
Céline Douarre, Carole Sourbier, Ilaria Dalla Rosa, Benu Brata Das, Christophe E Redon, Hongliang Zhang, Len Neckers, Yves Pommier. PLoS One 2012
61
13

SCAN1 mutant Tdp1 accumulates the enzyme--DNA intermediate and causes camptothecin hypersensitivity.
Heidrun Interthal, Hong Jing Chen, Thomas E Kehl-Fie, Jörg Zotzmann, John B Leppard, James J Champoux. EMBO J 2005
156
13

Tyrosyl-DNA phosphodiesterase 1 (TDP1) repairs DNA damage induced by topoisomerases I and II and base alkylation in vertebrate cells.
Junko Murai, Shar-yin N Huang, Benu Brata Das, Thomas S Dexheimer, Shunichi Takeda, Yves Pommier. J Biol Chem 2012
119
13

Top1-PARP1 association and beyond: from DNA topology to break repair.
Srijita Paul Chowdhuri, Benu Brata Das. NAR Cancer 2021
6
50

Tyrosyl-DNA phosphodiesterase (Tdp1) participates in the repair of Top2-mediated DNA damage.
Karin C Nitiss, Mobeen Malik, Xiaoping He, Stephen W White, John L Nitiss. Proc Natl Acad Sci U S A 2006
117
13

Repair of persistent strand breaks in the mitochondrial genome.
Peter Sykora, David M Wilson, Vilhelm A Bohr. Mech Ageing Dev 2012
47
8

Selective mitochondrial DNA degradation following double-strand breaks.
Amandine Moretton, Frédéric Morel, Bertil Macao, Philippe Lachaume, Layal Ishak, Mathilde Lefebvre, Isabelle Garreau-Balandier, Patrick Vernet, Maria Falkenberg, Géraldine Farge. PLoS One 2017
63
8

Mitochondrial genome maintenance in health and disease.
William C Copeland, Matthew J Longley. DNA Repair (Amst) 2014
83
8


Mechanisms of Mitochondrial DNA Repair in Mammals.
L A Zinovkina. Biochemistry (Mosc) 2018
43
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.