A citation-based method for searching scientific literature

Max E Wilkinson, Clément Charenton, Kiyoshi Nagai. Annu Rev Biochem 2020
Times Cited: 180







List of co-cited articles
831 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Spliceosome structure and function.
Cindy L Will, Reinhard Lührmann. Cold Spring Harb Perspect Biol 2011
966
16

The spliceosome: design principles of a dynamic RNP machine.
Markus C Wahl, Cindy L Will, Reinhard Lührmann. Cell 2009
14

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
13

Mechanisms and Regulation of Alternative Pre-mRNA Splicing.
Yeon Lee, Donald C Rio. Annu Rev Biochem 2015
655
12

Structural Insights into Nuclear pre-mRNA Splicing in Higher Eukaryotes.
Berthold Kastner, Cindy L Will, Holger Stark, Reinhard Lührmann. Cold Spring Harb Perspect Biol 2019
90
12

How Is Precursor Messenger RNA Spliced by the Spliceosome?
Ruixue Wan, Rui Bai, Xiechao Zhan, Yigong Shi. Annu Rev Biochem 2020
31
35

Structure of the human activated spliceosome in three conformational states.
Xiaofeng Zhang, Chuangye Yan, Xiechao Zhan, Lijia Li, Jianlin Lei, Yigong Shi. Cell Res 2018
117
10

Cryo-EM Structure of a Pre-catalytic Human Spliceosome Primed for Activation.
Karl Bertram, Dmitry E Agafonov, Olexandr Dybkov, David Haselbach, Majety N Leelaram, Cindy L Will, Henning Urlaub, Berthold Kastner, Reinhard Lührmann, Holger Stark. Cell 2017
141
10

Expansion of the eukaryotic proteome by alternative splicing.
Timothy W Nilsen, Brenton R Graveley. Nature 2010
9

RNA mis-splicing in disease.
Marina M Scotti, Maurice S Swanson. Nat Rev Genet 2016
592
9


Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing.
Qun Pan, Ofer Shai, Leo J Lee, Brendan J Frey, Benjamin J Blencowe. Nat Genet 2008
9

Molecular Mechanisms of pre-mRNA Splicing through Structural Biology of the Spliceosome.
Chuangye Yan, Ruixue Wan, Yigong Shi. Cold Spring Harb Perspect Biol 2019
71
12

Alternative splicing as a regulator of development and tissue identity.
Francisco E Baralle, Jimena Giudice. Nat Rev Mol Cell Biol 2017
548
9

Spliceosomal DEAH-Box ATPases Remodel Pre-mRNA to Activate Alternative Splice Sites.
Daniel R Semlow, Mario R Blanco, Nils G Walter, Jonathan P Staley. Cell 2016
95
8

Mechanism of 5' splice site transfer for human spliceosome activation.
Clément Charenton, Max E Wilkinson, Kiyoshi Nagai. Science 2019
70
11

Roles and mechanisms of alternative splicing in cancer - implications for care.
Sophie C Bonnal, Irene López-Oreja, Juan Valcárcel. Nat Rev Clin Oncol 2020
222
8

Structure of a human catalytic step I spliceosome.
Xiechao Zhan, Chuangye Yan, Xiaofeng Zhang, Jianlin Lei, Yigong Shi. Science 2018
79
10

Highly accurate protein structure prediction with AlphaFold.
John Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko,[...]. Nature 2021
8


Cryo-EM structure of the spliceosome immediately after branching.
Wojciech P Galej, Max E Wilkinson, Sebastian M Fica, Chris Oubridge, Andrew J Newman, Kiyoshi Nagai. Nature 2016
163
7

Alternative isoform regulation in human tissue transcriptomes.
Eric T Wang, Rickard Sandberg, Shujun Luo, Irina Khrebtukova, Lu Zhang, Christine Mayr, Stephen F Kingsmore, Gary P Schroth, Christopher B Burge. Nature 2008
7

An Atomic Structure of the Human Spliceosome.
Xiaofeng Zhang, Chuangye Yan, Jing Hang, Lorenzo I Finci, Jianlin Lei, Yigong Shi. Cell 2017
141
7

Structure and Conformational Dynamics of the Human Spliceosomal Bact Complex.
David Haselbach, Ilya Komarov, Dmitry E Agafonov, Klaus Hartmuth, Benjamin Graf, Olexandr Dybkov, Henning Urlaub, Berthold Kastner, Reinhard Lührmann, Holger Stark. Cell 2018
119
7

Mechanism of protein-guided folding of the active site U2/U6 RNA during spliceosome activation.
Cole Townsend, Majety N Leelaram, Dmitry E Agafonov, Olexandr Dybkov, Cindy L Will, Karl Bertram, Henning Urlaub, Berthold Kastner, Holger Stark, Reinhard Lührmann. Science 2020
27
25

Structures of the human spliceosomes before and after release of the ligated exon.
Xiaofeng Zhang, Xiechao Zhan, Chuangye Yan, Wenyu Zhang, Dongliang Liu, Jianlin Lei, Yigong Shi. Cell Res 2019
42
16


Prespliceosome structure provides insights into spliceosome assembly and regulation.
Clemens Plaschka, Pei-Chun Lin, Clément Charenton, Kiyoshi Nagai. Nature 2018
74
8

The significant other: splicing by the minor spliceosome.
Janne J Turunen, Elina H Niemelä, Bhupendra Verma, Mikko J Frilander. Wiley Interdiscip Rev RNA 2013
202
6

Comprehensive splice-site analysis using comparative genomics.
Nihar Sheth, Xavier Roca, Michelle L Hastings, Ted Roeder, Adrian R Krainer, Ravi Sachidanandam. Nucleic Acids Res 2006
245
6



Semiquantitative proteomic analysis of the human spliceosome via a novel two-dimensional gel electrophoresis method.
Dmitry E Agafonov, Jochen Deckert, Elmar Wolf, Peter Odenwälder, Sergey Bessonov, Cindy L Will, Henning Urlaub, Reinhard Lührmann. Mol Cell Biol 2011
135
6


Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
6

Structures of the human pre-catalytic spliceosome and its precursor spliceosome.
Xiechao Zhan, Chuangye Yan, Xiaofeng Zhang, Jianlin Lei, Yigong Shi. Cell Res 2018
57
10


WebLogo: a sequence logo generator.
Gavin E Crooks, Gary Hon, John-Marc Chandonia, Steven E Brenner. Genome Res 2004
6

Dynamic protein-protein interaction wiring of the human spliceosome.
Anna Hegele, Atanas Kamburov, Arndt Grossmann, Chrysovalantis Sourlis, Sylvia Wowro, Mareike Weimann, Cindy L Will, Vlad Pena, Reinhard Lührmann, Ulrich Stelzl. Mol Cell 2012
257
6

A day in the life of the spliceosome.
A Gregory Matera, Zefeng Wang. Nat Rev Mol Cell Biol 2014
593
6

The hnRNP family: insights into their role in health and disease.
Thomas Geuens, Delphine Bouhy, Vincent Timmerman. Hum Genet 2016
497
6

Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
5

Recurrent noncoding U1 snRNA mutations drive cryptic splicing in SHH medulloblastoma.
Hiromichi Suzuki, Sachin A Kumar, Shimin Shuai, Ander Diaz-Navarro, Ana Gutierrez-Fernandez, Pasqualino De Antonellis, Florence M G Cavalli, Kyle Juraschka, Hamza Farooq, Ichiyo Shibahara,[...]. Nature 2019
77
6

Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo.
Silvi Rouskin, Meghan Zubradt, Stefan Washietl, Manolis Kellis, Jonathan S Weissman. Nature 2014
544
5

Splicing Kinetics and Coordination Revealed by Direct Nascent RNA Sequencing through Nanopores.
Heather L Drexler, Karine Choquet, L Stirling Churchman. Mol Cell 2020
81
6


Alternative Splicing Control of Abiotic Stress Responses.
Tom Laloum, Guiomar Martín, Paula Duque. Trends Plant Sci 2018
214
5

Alternative Splicing and Protein Diversity: Plants Versus Animals.
Saurabh Chaudhary, Waqas Khokhar, Ibtissam Jabre, Anireddy S N Reddy, Lee J Byrne, Cornelia M Wilson, Naeem H Syed. Front Plant Sci 2019
71
7

A unified mechanism for intron and exon definition and back-splicing.
Xueni Li, Shiheng Liu, Lingdi Zhang, Aaron Issaian, Ryan C Hill, Sara Espinosa, Shasha Shi, Yanxiang Cui, Kalli Kappel, Rhiju Das,[...]. Nature 2019
74
6

H3B-8800, an orally available small-molecule splicing modulator, induces lethality in spliceosome-mutant cancers.
Michael Seiler, Akihide Yoshimi, Rachel Darman, Betty Chan, Gregg Keaney, Michael Thomas, Anant A Agrawal, Benjamin Caleb, Alfredo Csibi, Eckley Sean,[...]. Nat Med 2018
261
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.