A citation-based method for searching scientific literature


List of co-cited articles
86 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Single-Cell RNA-Seq Analysis of Retinal Development Identifies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specification.
Brian S Clark, Genevieve L Stein-O'Brien, Fion Shiau, Gabrielle H Cannon, Emily Davis-Marcisak, Thomas Sherman, Clayton P Santiago, Thanh V Hoang, Fatemeh Rajaii, Rebecca E James-Esposito,[...]. Neuron 2019
100
55

Deconstructing Retinal Organoids: Single Cell RNA-Seq Reveals the Cellular Components of Human Pluripotent Stem Cell-Derived Retina.
Joseph Collin, Rachel Queen, Darin Zerti, Birthe Dorgau, Rafiqul Hussain, Jonathan Coxhead, Simon Cockell, Majlinda Lako. Stem Cells 2019
40
55

A single-cell transcriptome atlas of the adult human retina.
Samuel W Lukowski, Camden Y Lo, Alexei A Sharov, Quan Nguyen, Lyujie Fang, Sandy Sc Hung, Ling Zhu, Ting Zhang, Ulrike Grünert, Tu Nguyen,[...]. EMBO J 2019
59
44

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics.
Karthik Shekhar, Sylvain W Lapan, Irene E Whitney, Nicholas M Tran, Evan Z Macosko, Monika Kowalczyk, Xian Adiconis, Joshua Z Levin, James Nemesh, Melissa Goldman,[...]. Cell 2016
457
44

Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes.
Bruce A Rheaume, Amyeo Jereen, Mohan Bolisetty, Muhammad S Sajid, Yue Yang, Kathleen Renna, Lili Sun, Paul Robson, Ephraim F Trakhtenberg. Nat Commun 2018
139
44

Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina.
Yi-Rong Peng, Karthik Shekhar, Wenjun Yan, Dustin Herrmann, Anna Sappington, Gregory S Bryman, Tavé van Zyl, Michael Tri H Do, Aviv Regev, Joshua R Sanes. Cell 2019
115
44

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
44

Single-Cell Profiles of Retinal Ganglion Cells Differing in Resilience to Injury Reveal Neuroprotective Genes.
Nicholas M Tran, Karthik Shekhar, Irene E Whitney, Anne Jacobi, Inbal Benhar, Guosong Hong, Wenjun Yan, Xian Adiconis, McKinzie E Arnold, Jung Min Lee,[...]. Neuron 2019
91
44

Reaching the brain: Advances in optic nerve regeneration.
Larry I Benowitz, Zhigang He, Jeffrey L Goldberg. Exp Neurol 2017
105
44

Single-Cell RNA Sequencing of hESC-Derived 3D Retinal Organoids Reveals Novel Genes Regulating RPC Commitment in Early Human Retinogenesis.
Xiying Mao, Qin An, Huiyu Xi, Xian-Jie Yang, Xiangmei Zhang, Songtao Yuan, Jinmei Wang, Youjin Hu, Qinghuai Liu, Guoping Fan. Stem Cell Reports 2019
15
33

Self-organizing optic-cup morphogenesis in three-dimensional culture.
Mototsugu Eiraku, Nozomu Takata, Hiroki Ishibashi, Masako Kawada, Eriko Sakakura, Satoru Okuda, Kiyotoshi Sekiguchi, Taiji Adachi, Yoshiki Sasai. Nature 2011
33

Single-Cell Transcriptomic Comparison of Human Fetal Retina, hPSC-Derived Retinal Organoids, and Long-Term Retinal Cultures.
Akshayalakshmi Sridhar, Akina Hoshino, Connor R Finkbeiner, Alex Chitsazan, Li Dai, Alexandra K Haugan, Kayla M Eschenbacher, Dana L Jackson, Cole Trapnell, Olivia Bermingham-McDonogh,[...]. Cell Rep 2020
44
33

Retinal Ganglion Cell Diversity and Subtype Specification from Human Pluripotent Stem Cells.
Kirstin B Langer, Sarah K Ohlemacher, M Joseph Phillips, Clarisse M Fligor, Peng Jiang, David M Gamm, Jason S Meyer. Stem Cell Reports 2018
45
33

Transplanted photoreceptor precursors transfer proteins to host photoreceptors by a mechanism of cytoplasmic fusion.
Mandeep S Singh, Jasmin Balmer, Alun R Barnard, Sher A Aslam, Daniela Moralli, Catherine M Green, Alona Barnea-Cramer, Isabel Duncan, Robert E MacLaren. Nat Commun 2016
102
33

Donor and host photoreceptors engage in material transfer following transplantation of post-mitotic photoreceptor precursors.
R A Pearson, A Gonzalez-Cordero, E L West, J R Ribeiro, N Aghaizu, D Goh, R D Sampson, A Georgiadis, P V Waldron, Y Duran,[...]. Nat Commun 2016
144
33

A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.
Lars G Fritsche, Wilmar Igl, Jessica N Cooke Bailey, Felix Grassmann, Sebanti Sengupta, Jennifer L Bragg-Gresham, Kathryn P Burdon, Scott J Hebbring, Cindy Wen, Mathias Gorski,[...]. Nat Genet 2016
593
33

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
33

Massively parallel digital transcriptional profiling of single cells.
Grace X Y Zheng, Jessica M Terry, Phillip Belgrader, Paul Ryvkin, Zachary W Bent, Ryan Wilson, Solongo B Ziraldo, Tobias D Wheeler, Geoff P McDermott, Junjie Zhu,[...]. Nat Commun 2017
33

Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput.
Todd M Gierahn, Marc H Wadsworth, Travis K Hughes, Bryan D Bryson, Andrew Butler, Rahul Satija, Sarah Fortune, J Christopher Love, Alex K Shalek. Nat Methods 2017
317
33

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells.
Daniel Ramsköld, Shujun Luo, Yu-Chieh Wang, Robin Li, Qiaolin Deng, Omid R Faridani, Gregory A Daniels, Irina Khrebtukova, Jeanne F Loring, Louise C Laurent,[...]. Nat Biotechnol 2012
798
33

Molecular characterization of foveal versus peripheral human retina by single-cell RNA sequencing.
A P Voigt, S S Whitmore, M J Flamme-Wiese, M J Riker, L A Wiley, B A Tucker, E M Stone, R F Mullins, T E Scheetz. Exp Eye Res 2019
38
33

Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration.
Madhvi Menon, Shahin Mohammadi, Jose Davila-Velderrain, Brittany A Goods, Tanina D Cadwell, Yu Xing, Anat Stemmer-Rachamimov, Alex K Shalek, John Christopher Love, Manolis Kellis,[...]. Nat Commun 2019
55
33


Cell-Type-Specific Complement Expression in the Healthy and Diseased Retina.
Diana Pauly, Divyansh Agarwal, Nicholas Dana, Nicole Schäfer, Josef Biber, Kirsten A Wunderlich, Yassin Jabri, Tobias Straub, Nancy R Zhang, Avneesh K Gautam,[...]. Cell Rep 2019
26
33

Improved Retinal Organoid Differentiation by Modulating Signaling Pathways Revealed by Comparative Transcriptome Analyses with Development In Vivo.
Matthew J Brooks, Holly Y Chen, Ryan A Kelley, Anupam K Mondal, Kunio Nagashima, Natalia De Val, Tiansen Li, Vijender Chaitankar, Anand Swaroop. Stem Cell Reports 2019
34
22

Modeling human retinal development with patient-specific induced pluripotent stem cells reveals multiple roles for visual system homeobox 2.
M Joseph Phillips, Enio T Perez, Jessica M Martin, Samantha T Reshel, Kyle A Wallace, Elizabeth E Capowski, Ruchira Singh, Lynda S Wright, Eric M Clark, Patrick M Barney,[...]. Stem Cells 2014
71
22

Reproducibility and staging of 3D human retinal organoids across multiple pluripotent stem cell lines.
Elizabeth E Capowski, Kayvan Samimi, Steven J Mayerl, M Joseph Phillips, Isabel Pinilla, Sara E Howden, Jishnu Saha, Alex D Jansen, Kimberly L Edwards, Lindsey D Jager,[...]. Development 2019
64
22

Morphological and Molecular Defects in Human Three-Dimensional Retinal Organoid Model of X-Linked Juvenile Retinoschisis.
Kang-Chieh Huang, Mong-Lien Wang, Shih-Jen Chen, Jean-Cheng Kuo, Won-Jing Wang, Phan Nguyen Nhi Nguyen, Karl J Wahlin, Jyh-Feng Lu, Audrey A Tran, Michael Shi,[...]. Stem Cell Reports 2019
22
22

Retinal repair by transplantation of photoreceptor precursors.
R E MacLaren, R A Pearson, A MacNeil, R H Douglas, T E Salt, M Akimoto, A Swaroop, J C Sowden, R R Ali. Nature 2006
727
22

Generation, transcriptome profiling, and functional validation of cone-rich human retinal organoids.
Sangbae Kim, Albert Lowe, Rachayata Dharmat, Seunghoon Lee, Leah A Owen, Jun Wang, Akbar Shakoor, Yumei Li, Denise J Morgan, Andre A Hejazi,[...]. Proc Natl Acad Sci U S A 2019
45
22

Retinal transplantation of photoreceptors results in donor-host cytoplasmic exchange.
Tiago Santos-Ferreira, Sílvia Llonch, Oliver Borsch, Kai Postel, Jochen Haas, Marius Ader. Nat Commun 2016
136
22

Generation of three-dimensional retinal tissue with functional photoreceptors from human iPSCs.
Xiufeng Zhong, Christian Gutierrez, Tian Xue, Christopher Hampton, M Natalia Vergara, Li-Hui Cao, Ann Peters, Tea Soon Park, Elias T Zambidis, Jason S Meyer,[...]. Nat Commun 2014
401
22

Restoration of vision after transplantation of photoreceptors.
R A Pearson, A C Barber, M Rizzi, C Hippert, T Xue, E L West, Y Duran, A J Smith, J Z Chuang, S A Azam,[...]. Nature 2012
299
22

Isolation and Comparative Transcriptome Analysis of Human Fetal and iPSC-Derived Cone Photoreceptor Cells.
Emily Welby, Jorn Lakowski, Valentina Di Foggia, Dimitri Budinger, Anai Gonzalez-Cordero, Aaron T L Lun, Michael Epstein, Aara Patel, Elisa Cuevas, Kamil Kruczek,[...]. Stem Cell Reports 2017
49
22

Regenerating Eye Tissues to Preserve and Restore Vision.
Jeffrey H Stern, Yangzi Tian, James Funderburgh, Graziella Pellegrini, Kang Zhang, Jeffrey L Goldberg, Robin R Ali, Michael Young, Yubing Xie, Sally Temple. Cell Stem Cell 2018
51
22

Long-term survival and differentiation of retinal neurons derived from human embryonic stem cell lines in un-immunosuppressed mouse retina.
Dustin Hambright, Kye-Yoon Park, Matthew Brooks, Ron McKay, Anand Swaroop, Igor O Nasonkin. Mol Vis 2012
79
22

Self-formation of optic cups and storable stratified neural retina from human ESCs.
Tokushige Nakano, Satoshi Ando, Nozomu Takata, Masako Kawada, Keiko Muguruma, Kiyotoshi Sekiguchi, Koichi Saito, Shigenobu Yonemura, Mototsugu Eiraku, Yoshiki Sasai. Cell Stem Cell 2012
727
22


Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model.
F William Townes, Stephanie C Hicks, Martin J Aryee, Rafael A Irizarry. Genome Biol 2019
58
22

Single-Cell RNA-Sequencing: Assessment of Differential Expression Analysis Methods.
Alessandra Dal Molin, Giacomo Baruzzo, Barbara Di Camillo. Front Genet 2017
31
22

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
22

Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex.
Alex A Pollen, Tomasz J Nowakowski, Joe Shuga, Xiaohui Wang, Anne A Leyrat, Jan H Lui, Nianzhen Li, Lukasz Szpankowski, Brian Fowler, Peilin Chen,[...]. Nat Biotechnol 2014
459
22

Single-cell profiling reveals an endothelium-mediated immunomodulatory pathway in the eye choroid.
Guillermo L Lehmann, Christin Hanke-Gogokhia, Yang Hu, Rohan Bareja, Zelda Salfati, Michael Ginsberg, Daniel J Nolan, Santiago P Mendez-Huergo, Tomas Dalotto-Moreno, Alexandre Wojcinski,[...]. J Exp Med 2020
11
22

Transplantation of adult mouse iPS cell-derived photoreceptor precursors restores retinal structure and function in degenerative mice.
Budd A Tucker, In-Hyun Park, Sara D Qi, Henry J Klassen, Caihui Jiang, Jing Yao, Stephen Redenti, George Q Daley, Michael J Young. PLoS One 2011
217
22

Glial cell fate specification modulated by the bHLH gene Hes5 in mouse retina.
M Hojo, T Ohtsuka, N Hashimoto, G Gradwohl, F Guillemot, R Kageyama. Development 2000
208
22

Single cell RNA sequencing of stem cell-derived retinal ganglion cells.
Maciej Daniszewski, Anne Senabouth, Quan H Nguyen, Duncan E Crombie, Samuel W Lukowski, Tejal Kulkarni, Valentin M Sluch, Jafar S Jabbari, Xitiz Chamling, Donald J Zack,[...]. Sci Data 2018
23
22

Current best practices in single-cell RNA-seq analysis: a tutorial.
Malte D Luecken, Fabian J Theis. Mol Syst Biol 2019
287
22

Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding.
Alexander B Rosenberg, Charles M Roco, Richard A Muscat, Anna Kuchina, Paul Sample, Zizhen Yao, Lucas T Graybuck, David J Peeler, Sumit Mukherjee, Wei Chen,[...]. Science 2018
359
22

Cell Atlas of The Human Fovea and Peripheral Retina.
Wenjun Yan, Yi-Rong Peng, Tavé van Zyl, Aviv Regev, Karthik Shekhar, Dejan Juric, Joshua R Sanes. Sci Rep 2020
23
22

Smart-seq2 for sensitive full-length transcriptome profiling in single cells.
Simone Picelli, Åsa K Björklund, Omid R Faridani, Sven Sagasser, Gösta Winberg, Rickard Sandberg. Nat Methods 2013
976
22


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.