A citation-based method for searching scientific literature

Tao Zhang, Mathew Wallis, Vida Petrovic, Jackie Challis, Paul Kalitsis, Damien F Hudson. Open Biol 2019
Times Cited: 28







List of co-cited articles
406 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Arginine methylation facilitates the recruitment of TOP3B to chromatin to prevent R loop accumulation.
Yanzhong Yang, Kevin M McBride, Sean Hensley, Yue Lu, Frederic Chedin, Mark T Bedford. Mol Cell 2014
148
57

Top3β is an RNA topoisomerase that works with fragile X syndrome protein to promote synapse formation.
Dongyi Xu, Weiping Shen, Rong Guo, Yutong Xue, Wei Peng, Jian Sima, Jay Yang, Alexei Sharov, Subramanya Srikantan, Jiandong Yang,[...]. Nat Neurosci 2013
93
42

Deletion of TOP3β, a component of FMRP-containing mRNPs, contributes to neurodevelopmental disorders.
Georg Stoll, Olli P H Pietiläinen, Bastian Linder, Jaana Suvisaari, Cornelia Brosi, William Hennah, Virpi Leppä, Minna Torniainen, Samuli Ripatti, Sirpa Ala-Mello,[...]. Nat Neurosci 2013
107
42

Roles of eukaryotic topoisomerases in transcription, replication and genomic stability.
Yves Pommier, Yilun Sun, Shar-Yin N Huang, John L Nitiss. Nat Rev Mol Cell Biol 2016
460
39


Topoisomerase 3β is the major topoisomerase for mRNAs and linked to neurodevelopment and mental dysfunction.
Muzammil Ahmad, Weiping Shen, Wen Li, Yutong Xue, Sige Zou, Dongyi Xu, Weidong Wang. Nucleic Acids Res 2017
29
32

Topoisomerase I suppresses genomic instability by preventing interference between replication and transcription.
Sandie Tuduri, Laure Crabbé, Chiara Conti, Hélène Tourrière, Heidi Holtgreve-Grez, Anna Jauch, Véronique Pantesco, John De Vos, Aubin Thomas, Charles Theillet,[...]. Nat Cell Biol 2009
347
32

Structural basis of the interaction between Topoisomerase IIIβ and the TDRD3 auxiliary factor.
Sakurako Goto-Ito, Atsushi Yamagata, Tomio S Takahashi, Yusuke Sato, Shuya Fukai. Sci Rep 2017
14
57

DNA and RNA topoisomerase activities of Top3β are promoted by mediator protein Tudor domain-containing protein 3.
Grace Ee-Lu Siaw, I-Fen Liu, Po-Yen Lin, Michael D Been, Tao-Shih Hsieh. Proc Natl Acad Sci U S A 2016
28
28

R Loops: From Physiological to Pathological Roles.
Tatiana García-Muse, Andrés Aguilera. Cell 2019
209
28

Transcription-coupled nucleotide excision repair factors promote R-loop-induced genome instability.
Julie Sollier, Caroline Townsend Stork, María L García-Rubio, Renee D Paulsen, Andrés Aguilera, Karlene A Cimprich. Mol Cell 2014
325
28

RNA topoisomerase is prevalent in all domains of life and associates with polyribosomes in animals.
Muzammil Ahmad, Yutong Xue, Seung Kyu Lee, Jennifer L Martindale, Weiping Shen, Wen Li, Sige Zou, Maria Ciaramella, Hélène Debat, Marc Nadal,[...]. Nucleic Acids Res 2016
44
25

Supercoiling of the DNA template during transcription.
L F Liu, J C Wang. Proc Natl Acad Sci U S A 1987
25


Topoisomerase 3β interacts with RNAi machinery to promote heterochromatin formation and transcriptional silencing in Drosophila.
Seung Kyu Lee, Yutong Xue, Weiping Shen, Yongqing Zhang, Yuyoung Joo, Muzammil Ahmad, Madoka Chinen, Yi Ding, Wai Lim Ku, Supriyo De,[...]. Nat Commun 2018
15
46

RNA Polymerase II Regulates Topoisomerase 1 Activity to Favor Efficient Transcription.
Laura Baranello, Damian Wojtowicz, Kairong Cui, Ballachanda N Devaiah, Hye-Jung Chung, Ka Yim Chan-Salis, Rajarshi Guha, Kelli Wilson, Xiaohu Zhang, Hongliang Zhang,[...]. Cell 2016
147
25

Arginine methylation of the C-terminus RGG motif promotes TOP3B topoisomerase activity and stress granule localization.
Lifeng Huang, Zhihao Wang, Nithya Narayanan, Yanzhong Yang. Nucleic Acids Res 2018
34
25

Loss of Topoisomerase I leads to R-loop-mediated transcriptional blocks during ribosomal RNA synthesis.
Aziz El Hage, Sarah L French, Ann L Beyer, David Tollervey. Genes Dev 2010
295
25

The many lives of type IA topoisomerases.
Anna H Bizard, Ian D Hickson. J Biol Chem 2020
22
31

Direct observation of topoisomerase IA gate dynamics.
Maria Mills, Yuk-Ching Tse-Dinh, Keir C Neuman. Nat Struct Mol Biol 2018
18
33

All tangled up: how cells direct, manage and exploit topoisomerase function.
Seychelle M Vos, Elsa M Tretter, Bryan H Schmidt, James M Berger. Nat Rev Mol Cell Biol 2011
397
21

Topoisomerase III Acts at the Replication Fork To Remove Precatenanes.
Chong M Lee, Guanshi Wang, Alexandros Pertsinidis, Kenneth J Marians. J Bacteriol 2019
22
27


Infertility and aneuploidy in mice lacking a type IA DNA topoisomerase III beta.
Kelvin Y Kwan, Peter B Moens, James C Wang. Proc Natl Acad Sci U S A 2003
58
21

Prevalent, Dynamic, and Conserved R-Loop Structures Associate with Specific Epigenomic Signatures in Mammals.
Lionel A Sanz, Stella R Hartono, Yoong Wearn Lim, Sandra Steyaert, Aparna Rajpurkar, Paul A Ginno, Xiaoqin Xu, Frédéric Chédin. Mol Cell 2016
279
21

DNA Topoisomerase I differentially modulates R-loops across the human genome.
Stefano G Manzo, Stella R Hartono, Lionel A Sanz, Jessica Marinello, Sara De Biasi, Andrea Cossarizza, Giovanni Capranico, Frederic Chedin. Genome Biol 2018
72
21

R-Loops as Cellular Regulators and Genomic Threats.
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
287
21



Structural basis for suppression of hypernegative DNA supercoiling by E. coli topoisomerase I.
Kemin Tan, Qingxuan Zhou, Bokun Cheng, Zhongtao Zhang, Andrzej Joachimiak, Yuk-Ching Tse-Dinh. Nucleic Acids Res 2015
38
17

Deletion of TOP3B Is Associated with Cognitive Impairment and Facial Dysmorphism.
Carolyn S Kaufman, Ann Genovese, Merlin G Butler. Cytogenet Genome Res 2016
18
27


R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters.
Paul A Ginno, Paul L Lott, Holly C Christensen, Ian Korf, Frédéric Chédin. Mol Cell 2012
491
17

R loops: from transcription byproducts to threats to genome stability.
Andrés Aguilera, Tatiana García-Muse. Mol Cell 2012
617
17

Dual Processing of R-Loops and Topoisomerase I Induces Transcription-Dependent DNA Double-Strand Breaks.
Agnese Cristini, Giulia Ricci, Sébastien Britton, Simona Salimbeni, Shar-Yin Naomi Huang, Jessica Marinello, Patrick Calsou, Yves Pommier, Gilles Favre, Giovanni Capranico,[...]. Cell Rep 2019
62
17


S1-DRIP-seq identifies high expression and polyA tracts as major contributors to R-loop formation.
Lamia Wahba, Lorenzo Costantino, Frederick J Tan, Anjali Zimmer, Douglas Koshland. Genes Dev 2016
155
17

R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells.
Kefei Yu, Frederic Chedin, Chih-Lin Hsieh, Thomas E Wilson, Michael R Lieber. Nat Immunol 2003
532
17

Transcription-Replication Conflict Orientation Modulates R-Loop Levels and Activates Distinct DNA Damage Responses.
Stephan Hamperl, Michael J Bocek, Joshua C Saldivar, Tomek Swigut, Karlene A Cimprich. Cell 2017
274
17

Regulatory R-loops as facilitators of gene expression and genome stability.
Christof Niehrs, Brian Luke. Nat Rev Mol Cell Biol 2020
139
17

RNase H1 and H2 Are Differentially Regulated to Process RNA-DNA Hybrids.
Arianna Lockhart, Vanessa Borges Pires, Fabio Bento, Vanessa Kellner, Sarah Luke-Glaser, George Yakoub, Helle D Ulrich, Brian Luke. Cell Rep 2019
47
17


DNA and RNA Cleavage Complexes and Repair Pathway for TOP3B RNA- and DNA-Protein Crosslinks.
Sourav Saha, Yilun Sun, Shar-Yin Naomi Huang, Simone Andrea Baechler, Lorinc Sandor Pongor, Keli Agama, Ukhyun Jo, Hongliang Zhang, Yuk-Ching Tse-Dinh, Yves Pommier. Cell Rep 2020
11
45

R-loop-dependent replication and genomic instability in bacteria.
Marc Drolet, Julien Brochu. DNA Repair (Amst) 2019
16
25

Direct interaction between Escherichia coli RNA polymerase and the zinc ribbon domains of DNA topoisomerase I.
Bokun Cheng, Chang-Xi Zhu, Chengling Ji, Adriana Ahumada, Yuk-Ching Tse-Dinh. J Biol Chem 2003
69
14

Topoisomerases I and III inhibit R-loop formation to prevent unregulated replication in the chromosomal Ter region of Escherichia coli.
Julien Brochu, Émilie Vlachos-Breton, Sarah Sutherland, Makisha Martel, Marc Drolet. PLoS Genet 2018
24
16


Topoisomerase III can serve as the cellular decatenase in Escherichia coli.
Pearl Nurse, Cindy Levine, Heide Hassing, Kenneth J Marians. J Biol Chem 2003
62
14

New mechanistic and functional insights into DNA topoisomerases.
Stefanie Hartman Chen, Nei-Li Chan, Tao-shih Hsieh. Annu Rev Biochem 2013
221
14



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.