A citation-based method for searching scientific literature

Taina T Immonen, Celine Camus, Carolyn Reid, Christine M Fennessey, Gregory Q Del Prete, Miles P Davenport, Jeffrey D Lifson, Brandon F Keele. Proc Natl Acad Sci U S A 2020
Times Cited: 6







List of co-cited articles
21 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Genetically-barcoded SIV facilitates enumeration of rebound variants and estimation of reactivation rates in nonhuman primates following interruption of suppressive antiretroviral therapy.
Christine M Fennessey, Mykola Pinkevych, Taina T Immonen, Arnold Reynaldi, Vanessa Venturi, Priyanka Nadella, Carolyn Reid, Laura Newman, Leslie Lipkey, Kelli Oswald,[...]. PLoS Pathog 2017
52
83

In Vivo Validation of the Viral Barcoding of Simian Immunodeficiency Virus SIVmac239 and the Development of New Barcoded SIV and Subtype B and C Simian-Human Immunodeficiency Viruses.
Sirish Khanal, Christine M Fennessey, Sean P O'Brien, Abigail Thorpe, Carolyn Reid, Taina T Immonen, Rodman Smith, Julian W Bess, Adrienne E Swanstrom, Gregory Q Del Prete,[...]. J Virol 2019
13
50

Predictors of SIV recrudescence following antiretroviral treatment interruption.
Mykola Pinkevych, Christine M Fennessey, Deborah Cromer, Carolyn Reid, Charles M Trubey, Jeffrey D Lifson, Brandon F Keele, Miles P Davenport. Elife 2019
12
50

Estimating Initial Viral Levels during Simian Immunodeficiency Virus/Human Immunodeficiency Virus Reactivation from Latency.
Mykola Pinkevych, Christine M Fennessey, Deborah Cromer, Martin Tolstrup, Ole S Søgaard, Thomas A Rasmussen, Brandon F Keele, Miles P Davenport. J Virol 2018
8
50

Clonal expansion of SIV-infected cells in macaques on antiretroviral therapy is similar to that of HIV-infected cells in humans.
Andrea L Ferris, David W Wells, Shuang Guo, Gregory Q Del Prete, Adrienne E Swanstrom, John M Coffin, Xiaolin Wu, Jeffrey D Lifson, Stephen H Hughes. PLoS Pathog 2019
20
33

The Landscape of Persistent Viral Genomes in ART-Treated SIV, SHIV, and HIV-2 Infections.
Alexandra M Bender, Francesco R Simonetti, Mithra R Kumar, Emily J Fray, Katherine M Bruner, Andrew E Timmons, Katherine Y Tai, Katharine M Jenike, Annukka A R Antar, Po-Ting Liu,[...]. Cell Host Microbe 2019
46
33

Animal models to achieve an HIV cure.
Nitasha Kumar, Ann Chahroudi, Guido Silvestri. Curr Opin HIV AIDS 2016
39
33

Envelope residue 375 substitutions in simian-human immunodeficiency viruses enhance CD4 binding and replication in rhesus macaques.
Hui Li, Shuyi Wang, Rui Kong, Wenge Ding, Fang-Hua Lee, Zahra Parker, Eunlim Kim, Gerald H Learn, Paul Hahn, Ben Policicchio,[...]. Proc Natl Acad Sci U S A 2016
138
33

Defining early SIV replication and dissemination dynamics following vaginal transmission.
Claire Deleage, Taina T Immonen, Christine M Fennessey, Arnold Reynaldi, Carolyn Reid, Laura Newman, Leslie Lipkey, Timothy E Schlub, Celine Camus, Sean O'Brien,[...]. Sci Adv 2019
23
33

Presence of an inducible HIV-1 latent reservoir during highly active antiretroviral therapy.
T W Chun, L Stuyver, S B Mizell, L A Ehler, J A Mican, M Baseler, A L Lloyd, M A Nowak, A S Fauci. Proc Natl Acad Sci U S A 1997
33

Identification of a reservoir for HIV-1 in patients on highly active antiretroviral therapy.
D Finzi, M Hermankova, T Pierson, L M Carruth, C Buck, R E Chaisson, T C Quinn, K Chadwick, J Margolick, R Brookmeyer,[...]. Science 1997
33

MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.
Koichiro Tamura, Glen Stecher, Daniel Peterson, Alan Filipski, Sudhir Kumar. Mol Biol Evol 2013
33

CD8(+) Lymphocytes Are Required for Maintaining Viral Suppression in SIV-Infected Macaques Treated with Short-Term Antiretroviral Therapy.
Emily K Cartwright, Lori Spicer, S Abigail Smith, David Lee, Randy Fast, Sara Paganini, Benton O Lawson, Melon Nega, Kirk Easley, Joern E Schmitz,[...]. Immunity 2016
129
33

Viral CTL escape mutants are generated in lymph nodes and subsequently become fixed in plasma and rectal mucosa during acute SIV infection of macaques.
Thomas H Vanderford, Chelsea Bleckwehl, Jessica C Engram, Richard M Dunham, Nichole R Klatt, Mark B Feinberg, David A Garber, Michael R Betts, Guido Silvestri. PLoS Pathog 2011
34
33


The size of the expressed HIV reservoir predicts timing of viral rebound after treatment interruption.
Jonathan Z Li, Behzad Etemad, Hayat Ahmed, Evgenia Aga, Ronald J Bosch, John W Mellors, Daniel R Kuritzkes, Michael M Lederman, Michael Para, Rajesh T Gandhi. AIDS 2016
190
33

Origin of rebound virus in chronically SIV-infected Rhesus monkeys following treatment discontinuation.
Po-Ting Liu, Brandon F Keele, Peter Abbink, Noe B Mercado, Jinyan Liu, Esther A Bondzie, Abishek Chandrashekar, Erica N Borducchi, Joseph Hesselgesser, Michael Mish,[...]. Nat Commun 2020
6
33

HIV Rebound Is Predominantly Fueled by Genetically Identical Viral Expansions from Diverse Reservoirs.
Marie-Angélique De Scheerder, Bram Vrancken, Simon Dellicour, Timothy Schlub, Eunok Lee, Wei Shao, Sofie Rutsaert, Chris Verhofstede, Tessa Kerre, Thomas Malfait,[...]. Cell Host Microbe 2019
77
33

Characterization of Intact Proviruses in Blood and Lymph Node from HIV-Infected Individuals Undergoing Analytical Treatment Interruption.
Line K Vibholm, Julio C C Lorenzi, Joy A Pai, Yehuda Z Cohen, Thiago Y Oliveira, John P Barton, Marco Garcia Noceda, Ching-Lan Lu, Yuria Ablanedo-Terrazas, Perla M Del Rio Estrada,[...]. J Virol 2019
39
33

Relationship between latent and rebound viruses in a clinical trial of anti-HIV-1 antibody 3BNC117.
Yehuda Z Cohen, Julio C C Lorenzi, Lisa Krassnig, John P Barton, Leah Burke, Joy Pai, Ching-Lan Lu, Pilar Mendoza, Thiago Y Oliveira, Christopher Sleckman,[...]. J Exp Med 2018
64
33

Mamu-A*01 allele-mediated attenuation of disease progression in simian-human immunodeficiency virus infection.
Zhi-Qiang Zhang, Tong-Ming Fu, Danilo R Casimiro, Mary-Ellen Davies, Xiaoping Liang, William A Schleif, Larry Handt, Lynda Tussey, Minchun Chen, Aimin Tang,[...]. J Virol 2002
85
33

Simian-Human Immunodeficiency Virus SHIV.CH505 Infection of Rhesus Macaques Results in Persistent Viral Replication and Induces Intestinal Immunopathology.
Katharine J Bar, Ernesto Coronado, Tiffany Hensley-McBain, Megan A O'Connor, Jessica M Osborn, Charlene Miller, Toni M Gott, Solomon Wangari, Naoto Iwayama, Chul Y Ahrens,[...]. J Virol 2019
17
16

Antibody and TLR7 agonist delay viral rebound in SHIV-infected monkeys.
Erica N Borducchi, Jinyan Liu, Joseph P Nkolola, Anthony M Cadena, Wen-Han Yu, Stephanie Fischinger, Thomas Broge, Peter Abbink, Noe B Mercado, Abishek Chandrashekar,[...]. Nature 2018
177
16

Resistance to type 1 interferons is a major determinant of HIV-1 transmission fitness.
Shilpa S Iyer, Frederic Bibollet-Ruche, Scott Sherrill-Mix, Gerald H Learn, Lindsey Plenderleith, Andrew G Smith, Hannah J Barbian, Ronnie M Russell, Marcos V P Gondim, Catherine Y Bahari,[...]. Proc Natl Acad Sci U S A 2017
99
16

Vaccine-Induced Protection from Homologous Tier 2 SHIV Challenge in Nonhuman Primates Depends on Serum-Neutralizing Antibody Titers.
Matthias G Pauthner, Joseph P Nkolola, Colin Havenar-Daughton, Ben Murrell, Samantha M Reiss, Raiza Bastidas, Jérémie Prévost, Rebecca Nedellec, Benjamin von Bredow, Peter Abbink,[...]. Immunity 2019
93
16

Molecularly cloned SHIV-1157ipd3N4: a highly replication- competent, mucosally transmissible R5 simian-human immunodeficiency virus encoding HIV clade C Env.
R J Song, A-L Chenine, R A Rasmussen, C R Ruprecht, S Mirshahidi, R D Grisson, W Xu, J B Whitney, L M Goins, H Ong,[...]. J Virol 2006
129
16

Control of a mucosal challenge and prevention of AIDS by a multiprotein DNA/MVA vaccine.
R R Amara, F Villinger, J D Altman, S L Lydy, S P O'Neil, S I Staprans, D C Montefiori, Y Xu, J G Herndon, L S Wyatt,[...]. Science 2001
961
16

Analytical Treatment Interruption after Short-Term Antiretroviral Therapy in a Postnatally Simian-Human Immunodeficiency Virus-Infected Infant Rhesus Macaque Model.
Ria Goswami, Ashley N Nelson, Joshua J Tu, Maria Dennis, Liqi Feng, Amit Kumar, Jesse Mangold, Riley J Mangan, Cameron Mattingly, Alan D Curtis,[...]. mBio 2019
11
16

Staged induction of HIV-1 glycan-dependent broadly neutralizing antibodies.
Mattia Bonsignori, Edward F Kreider, Daniela Fera, R Ryan Meyerhoff, Todd Bradley, Kevin Wiehe, S Munir Alam, Baptiste Aussedat, William E Walkowicz, Kwan-Ki Hwang,[...]. Sci Transl Med 2017
128
16

Rational design and in vivo selection of SHIVs encoding transmitted/founder subtype C HIV-1 envelopes.
Sean P O'Brien, Adrienne E Swanstrom, Amarendra Pegu, Sung-Youl Ko, Taina T Immonen, Gregory Q Del Prete, Christine M Fennessey, Jason Gorman, Kathryn E Foulds, Stephen D Schmidt,[...]. PLoS Pathog 2019
11
16

Novel Transmitted/Founder Simian-Human Immunodeficiency Viruses for Human Immunodeficiency Virus Latency and Cure Research.
Anya M Bauer, Widade Ziani, Emily Lindemuth, Leticia Kuri-Cervantes, Hui Li, Fang-Hua Lee, Meagan Watkins, Wenge Ding, Huanbin Xu, Ronald Veazey,[...]. J Virol 2020
7
16


Phenotypic properties of transmitted founder HIV-1.
Nicholas F Parrish, Feng Gao, Hui Li, Elena E Giorgi, Hannah J Barbian, Erica H Parrish, Lara Zajic, Shilpa S Iyer, Julie M Decker, Amit Kumar,[...]. Proc Natl Acad Sci U S A 2013
297
16

Differential Outcomes following Optimization of Simian-Human Immunodeficiency Viruses from Clades AE, B, and C.
Lawrence J Tartaglia, Siddhant Gupte, Kevin C Pastores, Sebastien Trott, Peter Abbink, Noe B Mercado, Zhenfeng Li, Po-Ting Liu, Erica N Borducchi, Abishek Chandrashekar,[...]. J Virol 2020
5
20

A single injection of anti-HIV-1 antibodies protects against repeated SHIV challenges.
Rajeev Gautam, Yoshiaki Nishimura, Amarendra Pegu, Martha C Nason, Florian Klein, Anna Gazumyan, Jovana Golijanin, Alicia Buckler-White, Reza Sadjadpour, Keyun Wang,[...]. Nature 2016
232
16

Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus.
Hua-Xin Liao, Rebecca Lynch, Tongqing Zhou, Feng Gao, S Munir Alam, Scott D Boyd, Andrew Z Fire, Krishna M Roskin, Chaim A Schramm, Zhenhai Zhang,[...]. Nature 2013
726
16

Most rhesus macaques infected with the CCR5-tropic SHIV(AD8) generate cross-reactive antibodies that neutralize multiple HIV-1 strains.
Masashi Shingai, Olivia K Donau, Stephen D Schmidt, Rajeev Gautam, Ronald J Plishka, Alicia Buckler-White, Reza Sadjadpour, Wendy R Lee, Celia C LaBranche, David C Montefiori,[...]. Proc Natl Acad Sci U S A 2012
58
16

Reduction of simian-human immunodeficiency virus 89.6P viremia in rhesus monkeys by recombinant modified vaccinia virus Ankara vaccination.
D H Barouch, S Santra, M J Kuroda, J E Schmitz, R Plishka, A Buckler-White, A E Gaitan, R Zin, J H Nam, L S Wyatt,[...]. J Virol 2001
159
16

Protection of macaques from vaginal SHIV challenge by vaginally delivered inhibitors of virus-cell fusion.
Ronald S Veazey, Per Johan Klasse, Susan M Schader, Qinxue Hu, Thomas J Ketas, Min Lu, Preston A Marx, Jason Dufour, Richard J Colonno, Robin J Shattock,[...]. Nature 2005
259
16

Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection.
Brandon F Keele, Elena E Giorgi, Jesus F Salazar-Gonzalez, Julie M Decker, Kimmy T Pham, Maria G Salazar, Chuanxi Sun, Truman Grayson, Shuyi Wang, Hui Li,[...]. Proc Natl Acad Sci U S A 2008
16

A single gp120 residue can affect HIV-1 tropism in macaques.
Gregory Q Del Prete, Brandon F Keele, Jeannine Fode, Keyur Thummar, Adrienne E Swanstrom, Anthony Rodriguez, Alice Raymond, Jacob D Estes, Celia C LaBranche, David C Montefiori,[...]. PLoS Pathog 2017
19
16

Systemic HIV and SIV latency reversal via non-canonical NF-κB signalling in vivo.
Christopher C Nixon, Maud Mavigner, Gavin C Sampey, Alyssa D Brooks, Rae Ann Spagnuolo, David M Irlbeck, Cameron Mattingly, Phong T Ho, Nils Schoof, Corinne G Cammon,[...]. Nature 2020
128
16

Simian-Human Immunodeficiency Virus SHIV.CH505-Infected Infant and Adult Rhesus Macaques Exhibit Similar Env-Specific Antibody Kinetics, despite Distinct T-Follicular Helper and Germinal Center B Cell Landscapes.
Ashley N Nelson, Ria Goswami, Maria Dennis, Joshua Tu, Riley J Mangan, Pooja T Saha, Derek W Cain, Alan D Curtis, Xiaoying Shen, George M Shaw,[...]. J Virol 2019
9
16

Early antibody therapy can induce long-lasting immunity to SHIV.
Yoshiaki Nishimura, Rajeev Gautam, Tae-Wook Chun, Reza Sadjadpour, Kathryn E Foulds, Masashi Shingai, Florian Klein, Anna Gazumyan, Jovana Golijanin, Mitzi Donaldson,[...]. Nature 2017
187
16

Mucosal transmission and induction of simian AIDS by CCR5-specific simian/human immunodeficiency virus SHIV(SF162P3).
J M Harouse, A Gettie, T Eshetu, R C Tan, R Bohm, J Blanchard, G Baskin, C Cheng-Mayer. J Virol 2001
182
16

Effective, low-titer antibody protection against low-dose repeated mucosal SHIV challenge in macaques.
Ann J Hessell, Pascal Poignard, Meredith Hunter, Lars Hangartner, David M Tehrani, Wim K Bleeker, Paul W H I Parren, Preston A Marx, Dennis R Burton. Nat Med 2009
453
16




Passive transfer of modest titers of potent and broadly neutralizing anti-HIV monoclonal antibodies block SHIV infection in macaques.
Masashi Shingai, Olivia K Donau, Ronald J Plishka, Alicia Buckler-White, John R Mascola, Gary J Nabel, Martha C Nason, David Montefiori, Brian Moldt, Pascal Poignard,[...]. J Exp Med 2014
245
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.