A citation-based method for searching scientific literature

Richard P Koche, Elias Rodriguez-Fos, Konstantin Helmsauer, Martin Burkert, Ian C MacArthur, Jesper Maag, Rocio Chamorro, Natalia Munoz-Perez, Montserrat Puiggròs, Heathcliff Dorado Garcia, Yi Bei, Claudia Röefzaad, Victor Bardinet, Annabell Szymansky, Annika Winkler, Theresa Thole, Natalie Timme, Katharina Kasack, Steffen Fuchs, Filippos Klironomos, Nina Thiessen, Eric Blanc, Karin Schmelz, Annette Künkele, Patrick Hundsdörfer, Carolina Rosswog, Jessica Theissen, Dieter Beule, Hedwig Deubzer, Sascha Sauer, Joern Toedling, Matthias Fischer, Falk Hertwig, Roland F Schwarz, Angelika Eggert, David Torrents, Johannes H Schulte, Anton G Henssen. Nat Genet 2020
Times Cited: 81







List of co-cited articles
864 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Circular ecDNA promotes accessible chromatin and high oncogene expression.
Sihan Wu, Kristen M Turner, Nam Nguyen, Ramya Raviram, Marcella Erb, Jennifer Santini, Jens Luebeck, Utkrisht Rajkumar, Yarui Diao, Bin Li,[...]. Nature 2019
133
76

Extrachromosomal oncogene amplification drives tumour evolution and genetic heterogeneity.
Kristen M Turner, Viraj Deshpande, Doruk Beyter, Tomoyuki Koga, Jessica Rusert, Catherine Lee, Bin Li, Karen Arden, Bing Ren, David A Nathanson,[...]. Nature 2017
257
74

Functional Enhancers Shape Extrachromosomal Oncogene Amplifications.
Andrew R Morton, Nergiz Dogan-Artun, Zachary J Faber, Graham MacLeod, Cynthia F Bartels, Megan S Piazza, Kevin C Allan, Stephen C Mack, Xiuxing Wang, Ryan C Gimple,[...]. Cell 2019
95
61

Extrachromosomal oncogene amplification in tumour pathogenesis and evolution.
Roel G W Verhaak, Vineet Bafna, Paul S Mischel. Nat Rev Cancer 2019
99
58

Targeted therapy resistance mediated by dynamic regulation of extrachromosomal mutant EGFR DNA.
David A Nathanson, Beatrice Gini, Jack Mottahedeh, Koppany Visnyei, Tomoyuki Koga, German Gomez, Ascia Eskin, Kiwook Hwang, Jun Wang, Kenta Masui,[...]. Science 2014
300
53

Discordant inheritance of chromosomal and extrachromosomal DNA elements contributes to dynamic disease evolution in glioblastoma.
Ana C deCarvalho, Hoon Kim, Laila M Poisson, Mary E Winn, Claudius Mueller, David Cherba, Julie Koeman, Sahil Seth, Alexei Protopopov, Michelle Felicella,[...]. Nat Genet 2018
113
46

Extrachromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers.
Hoon Kim, Nam-Phuong Nguyen, Kristen Turner, Sihan Wu, Amit D Gujar, Jens Luebeck, Jihe Liu, Viraj Deshpande, Utkrisht Rajkumar, Sandeep Namburi,[...]. Nat Genet 2020
81
46

Exploring the landscape of focal amplifications in cancer using AmpliconArchitect.
Viraj Deshpande, Jens Luebeck, Nam-Phuong D Nguyen, Mehrdad Bakhtiari, Kristen M Turner, Richard Schwab, Hannah Carter, Paul S Mischel, Vineet Bafna. Nat Commun 2019
61
57

MINUTE CHROMATIN BODIES IN MALIGNANT TUMOURS OF CHILDHOOD.
D COX, C YUNCKEN, A I SPRIGGS. Lancet 1965
203
41

Gene amplification as double minutes or homogeneously staining regions in solid tumors: origin and structure.
Clelia Tiziana Storlazzi, Angelo Lonoce, Maria C Guastadisegni, Domenico Trombetta, Pietro D'Addabbo, Giulia Daniele, Alberto L'Abbate, Gemma Macchia, Cecilia Surace, Klaas Kok,[...]. Genome Res 2010
119
39

Circular DNA elements of chromosomal origin are common in healthy human somatic tissue.
Henrik Devitt Møller, Marghoob Mohiyuddin, Iñigo Prada-Luengo, M Reza Sailani, Jens Frey Halling, Peter Plomgaard, Lasse Maretty, Anders Johannes Hansen, Michael P Snyder, Henriette Pilegaard,[...]. Nat Commun 2018
96
39

Normal and Cancerous Tissues Release Extrachromosomal Circular DNA (eccDNA) into the Circulation.
Pankaj Kumar, Laura W Dillon, Yoshiyuki Shibata, Amir A Jazaeri, David R Jones, Anindya Dutta. Mol Cancer Res 2017
85
37

Extrachromosomal microDNAs and chromosomal microdeletions in normal tissues.
Yoshiyuki Shibata, Pankaj Kumar, Ryan Layer, Smaranda Willcox, Jeffrey R Gagan, Jack D Griffith, Anindya Dutta. Science 2012
128
34

Extrachromosomal circular DNA is common in yeast.
Henrik D Møller, Lance Parsons, Tue S Jørgensen, David Botstein, Birgitte Regenberg. Proc Natl Acad Sci U S A 2015
105
34

Discoveries of Extrachromosomal Circles of DNA in Normal and Tumor Cells.
Teressa Paulsen, Pankaj Kumar, M Murat Koseoglu, Anindya Dutta. Trends Genet 2018
68
41

Massive genomic rearrangement acquired in a single catastrophic event during cancer development.
Philip J Stephens, Chris D Greenman, Beiyuan Fu, Fengtang Yang, Graham R Bignell, Laura J Mudie, Erin D Pleasance, King Wai Lau, David Beare, Lucy A Stebbings,[...]. Cell 2011
33

Double minute chromosomes can be produced from precursors derived from a chromosomal deletion.
S M Carroll, M L DeRose, P Gaudray, C M Moore, D R Needham-Vandevanter, D D Von Hoff, G M Wahl. Mol Cell Biol 1988
183
29

Enhancer hijacking determines extrachromosomal circular MYCN amplicon architecture in neuroblastoma.
Konstantin Helmsauer, Maria E Valieva, Salaheddine Ali, Rocío Chamorro González, Robert Schöpflin, Claudia Röefzaad, Yi Bei, Heathcliff Dorado Garcia, Elias Rodriguez-Fos, Montserrat Puiggròs,[...]. Nat Commun 2020
44
54


Structure and evolution of double minutes in diagnosis and relapse brain tumors.
Ke Xu, Liang Ding, Ti-Cheng Chang, Ying Shao, Jason Chiang, Heather Mulder, Shuoguo Wang, Tim I Shaw, Ji Wen, Laura Hover,[...]. Acta Neuropathol 2019
35
60

Production of Extrachromosomal MicroDNAs Is Linked to Mismatch Repair Pathways and Transcriptional Activity.
Laura W Dillon, Pankaj Kumar, Yoshiyuki Shibata, Yuh-Hwa Wang, Smaranda Willcox, Jack D Griffith, Yves Pommier, Shunichi Takeda, Anindya Dutta. Cell Rep 2015
67
31

Inhibiting homologous recombination decreases extrachromosomal amplification but has no effect on intrachromosomal amplification in methotrexate-resistant colon cancer cells.
Mengdi Cai, Huishu Zhang, Liqing Hou, Wei Gao, Ying Song, Xiaobo Cui, Chunxiang Li, Rongwei Guan, Jinfa Ma, Xu Wang,[...]. Int J Cancer 2019
27
77

Transposition and amplification of oncogene-related sequences in human neuroblastomas.
N E Kohl, N Kanda, R R Schreck, G Bruns, S A Latt, F Gilbert, F W Alt. Cell 1983
656
24

Genomic organization and evolution of double minutes/homogeneously staining regions with MYC amplification in human cancer.
Alberto L'Abbate, Gemma Macchia, Pietro D'Addabbo, Angelo Lonoce, Doron Tolomeo, Domenico Trombetta, Klaas Kok, Christoph Bartenhagen, Christopher W Whelan, Orazio Palumbo,[...]. Nucleic Acids Res 2014
67
28

Molecular structure of double-minute chromosomes bearing amplified copies of the epidermal growth factor receptor gene in gliomas.
Nicolas Vogt, Sandrine-Hélène Lefèvre, Françoise Apiou, Anne-Marie Dutrillaux, Andrej Cör, Pascal Leuraud, Marie-France Poupon, Bernard Dutrillaux, Michelle Debatisse, Bernard Malfoy. Proc Natl Acad Sci U S A 2004
105
23


Extrachromosomal DNA-relieving heredity constraints, accelerating tumour evolution.
C Bailey, M J Shoura, P S Mischel, C Swanton. Ann Oncol 2020
33
57

Oncogenic extrachromosomal DNA functions as mobile enhancers to globally amplify chromosomal transcription.
Yanfen Zhu, Amit D Gujar, Chee-Hong Wong, Harianto Tjong, Chew Yee Ngan, Liang Gong, Yi-An Chen, Hoon Kim, Jihe Liu, Meihong Li,[...]. Cancer Cell 2021
32
59

Identification and characterization of extrachromosomal circular DNA in maternal plasma.
Sarah T K Sin, Peiyong Jiang, Jiaen Deng, Lu Ji, Suk Hang Cheng, Anindya Dutta, Tak Y Leung, K C Allen Chan, Rossa W K Chiu, Y M Dennis Lo. Proc Natl Acad Sci U S A 2020
40
45

Molecular characterization of cell-free eccDNAs in human plasma.
Jing Zhu, Fan Zhang, Meijun Du, Peng Zhang, Songbin Fu, Liang Wang. Sci Rep 2017
48
37

Transcription-induced formation of extrachromosomal DNA during yeast ageing.
Ryan M Hull, Michelle King, Grazia Pizza, Felix Krueger, Xabier Vergara, Jonathan Houseley. PLoS Biol 2019
36
50

Small extrachromosomal circular DNAs, microDNA, produce short regulatory RNAs that suppress gene expression independent of canonical promoters.
Teressa Paulsen, Yoshiyuki Shibata, Pankaj Kumar, Laura Dillon, Anindya Dutta. Nucleic Acids Res 2019
31
58

Novel role for non-homologous end joining in the formation of double minutes in methotrexate-resistant colon cancer cells.
Xiangning Meng, Xiuying Qi, Huanhuan Guo, Mengdi Cai, Chunxiang Li, Jing Zhu, Feng Chen, Huan Guo, Jie Li, Yuzhen Zhao,[...]. J Med Genet 2015
35
51

Chromothripsis from DNA damage in micronuclei.
Cheng-Zhong Zhang, Alexander Spektor, Hauke Cornils, Joshua M Francis, Emily K Jackson, Shiwei Liu, Matthew Meyerson, David Pellman. Nature 2015
599
22

ATAC-seq identifies thousands of extrachromosomal circular DNA in cancer and cell lines.
Pankaj Kumar, Shashi Kiran, Shekhar Saha, Zhangli Su, Teressa Paulsen, Ajay Chatrath, Yoshiyuki Shibata, Etsuko Shibata, Anindya Dutta. Sci Adv 2020
33
51

Chromothripsis drives the evolution of gene amplification in cancer.
Ofer Shoshani, Simon F Brunner, Rona Yaeger, Peter Ly, Yael Nechemia-Arbely, Dong Hyun Kim, Rongxin Fang, Guillaume A Castillon, Miao Yu, Julia S Z Li,[...]. Nature 2021
68
25

Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing.
Isidro Cortés-Ciriano, Jake June-Koo Lee, Ruibin Xi, Dhawal Jain, Youngsook L Jung, Lixing Yang, Dmitry Gordenin, Leszek J Klimczak, Cheng-Zhong Zhang, David S Pellman,[...]. Nat Genet 2020
176
19

Extrachromosomal driver mutations in glioblastoma and low-grade glioma.
Sergey Nikolaev, Federico Santoni, Marco Garieri, Periklis Makrythanasis, Emilie Falconnet, Michel Guipponi, Anne Vannier, Ivan Radovanovic, Frederique Bena, Françoise Forestier,[...]. Nat Commun 2014
46
32

Amplicon rearrangements during the extrachromosomal and intrachromosomal amplification process in a glioma.
Nicolas Vogt, Anne Gibaud, Frédéric Lemoine, Pierre de la Grange, Michelle Debatisse, Bernard Malfoy. Nucleic Acids Res 2014
30
50

Elimination of extrachromosomally amplified MYC genes from human tumor cells reduces their tumorigenicity.
D D Von Hoff, J R McGill, B J Forseth, K K Davidson, T P Bradley, D R Van Devanter, G M Wahl. Proc Natl Acad Sci U S A 1992
133
18



Induction of differentiation in HL60 cells by the reduction of extrachromosomally amplified c-myc.
S G Eckhardt, A Dai, K K Davidson, B J Forseth, G M Wahl, D D Von Hoff. Proc Natl Acad Sci U S A 1994
82
17


MYC-containing double minutes in hematologic malignancies: evidence in favor of the episome model and exclusion of MYC as the target gene.
Clelia Tiziana Storlazzi, Thoas Fioretos, Cecilia Surace, Angelo Lonoce, Angela Mastrorilli, Bodil Strömbeck, Pietro D'Addabbo, Francesco Iacovelli, Crescenzio Minervini, Anna Aventin,[...]. Hum Mol Genet 2006
88
17

Genome sequencing of pediatric medulloblastoma links catastrophic DNA rearrangements with TP53 mutations.
Tobias Rausch, David T W Jones, Marc Zapatka, Adrian M Stütz, Thomas Zichner, Joachim Weischenfeldt, Natalie Jäger, Marc Remke, David Shih, Paul A Northcott,[...]. Cell 2012
564
17



Frequency of double minute chromosomes and combined cytogenetic abnormalities and their characteristics.
Yihui Fan, Renfang Mao, Hongpei Lv, Jie Xu, Lei Yan, Yanhong Liu, Meng Shi, Guohua Ji, Yang Yu, Jing Bai,[...]. J Appl Genet 2011
32
40



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.