A citation-based method for searching scientific literature

Weichen Zhou, Sarah B Emery, Diane A Flasch, Yifan Wang, Kenneth Y Kwan, Jeffrey M Kidd, John V Moran, Ryan E Mills. Nucleic Acids Res 2020
Times Cited: 28







List of co-cited articles
293 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


An integrated map of structural variation in 2,504 human genomes.
Peter H Sudmant, Tobias Rausch, Eugene J Gardner, Robert E Handsaker, Alexej Abyzov, John Huddleston, Yan Zhang, Kai Ye, Goo Jun, Markus Hsi-Yang Fritz,[...]. Nature 2015
999
42

Initial sequencing and analysis of the human genome.
E S Lander, L M Linton, B Birren, C Nusbaum, M C Zody, J Baldwin, K Devon, K Dewar, M Doyle, W FitzHugh,[...]. Nature 2001
42

Multi-platform discovery of haplotype-resolved structural variation in human genomes.
Mark J P Chaisson, Ashley D Sanders, Xuefang Zhao, Ankit Malhotra, David Porubsky, Tobias Rausch, Eugene J Gardner, Oscar L Rodriguez, Li Guo, Ryan L Collins,[...]. Nat Commun 2019
247
35

The Mobile Element Locator Tool (MELT): population-scale mobile element discovery and biology.
Eugene J Gardner, Vincent K Lam, Daniel N Harris, Nelson T Chuang, Emma C Scott, W Stephen Pittard, Ryan E Mills, Scott E Devine. Genome Res 2017
109
32



Roles for retrotransposon insertions in human disease.
Dustin C Hancks, Haig H Kazazian. Mob DNA 2016
275
28

Cell lineage analysis in human brain using endogenous retroelements.
Gilad D Evrony, Eunjung Lee, Bhaven K Mehta, Yuval Benjamini, Robert M Johnson, Xuyu Cai, Lixing Yang, Psalm Haseley, Hillel S Lehmann, Peter J Park,[...]. Neuron 2015
142
28

A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
25

Hot L1s account for the bulk of retrotransposition in the human population.
Brook Brouha, Joshua Schustak, Richard M Badge, Sheila Lutz-Prigge, Alexander H Farley, John V Moran, Haig H Kazazian. Proc Natl Acad Sci U S A 2003
659
25

LINE-1 retrotransposition activity in human genomes.
Christine R Beck, Pamela Collier, Catriona Macfarlane, Maika Malig, Jeffrey M Kidd, Evan E Eichler, Richard M Badge, John V Moran. Cell 2010
367
21

A hot L1 retrotransposon evades somatic repression and initiates human colorectal cancer.
Emma C Scott, Eugene J Gardner, Ashiq Masood, Nelson T Chuang, Paula M Vertino, Scott E Devine. Genome Res 2016
112
21

L1-associated genomic regions are deleted in somatic cells of the healthy human brain.
Jennifer A Erwin, Apuã C M Paquola, Tatjana Singer, Iryna Gallina, Mark Novotny, Carolina Quayle, Tracy A Bedrosian, Francisco I A Alves, Cheyenne R Butcher, Joseph R Herdy,[...]. Nat Neurosci 2016
93
21

Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition.
Bernardo Rodriguez-Martin, Eva G Alvarez, Adrian Baez-Ortega, Jorge Zamora, Fran Supek, Jonas Demeulemeester, Martin Santamarina, Young Seok Ju, Javier Temes, Daniel Garcia-Souto,[...]. Nat Genet 2020
82
21

LINE-1 Evasion of Epigenetic Repression in Humans.
Francisco J Sanchez-Luque, Marie-Jeanne H C Kempen, Patricia Gerdes, Dulce B Vargas-Landin, Sandra R Richardson, Robin-Lee Troskie, J Samuel Jesuadian, Seth W Cheetham, Patricia E Carreira, Carmen Salvador-Palomeque,[...]. Mol Cell 2019
44
21

A structural variation reference for medical and population genetics.
Ryan L Collins, Harrison Brand, Konrad J Karczewski, Xuefang Zhao, Jessica Alföldi, Laurent C Francioli, Amit V Khera, Chelsea Lowther, Laura D Gauthier, Harold Wang,[...]. Nature 2020
141
21

Characterizing the Major Structural Variant Alleles of the Human Genome.
Peter A Audano, Arvis Sulovari, Tina A Graves-Lindsay, Stuart Cantsilieris, Melanie Sorensen, AnneMarie E Welch, Max L Dougherty, Bradley J Nelson, Ankeeta Shah, Susan K Dutcher,[...]. Cell 2019
153
21

Telomere-to-telomere assembly of a complete human X chromosome.
Karen H Miga, Sergey Koren, Arang Rhie, Mitchell R Vollger, Ariel Gershman, Andrey Bzikadze, Shelise Brooks, Edmund Howe, David Porubsky, Glennis A Logsdon,[...]. Nature 2020
166
21

Nanopore Sequencing Enables Comprehensive Transposable Element Epigenomic Profiling.
Adam D Ewing, Nathan Smits, Francisco J Sanchez-Luque, Jamila Faivre, Paul M Brennan, Sandra R Richardson, Seth W Cheetham, Geoffrey J Faulkner. Mol Cell 2020
21
28

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
17

High frequency retrotransposition in cultured mammalian cells.
J V Moran, S E Holmes, T P Naas, R J DeBerardinis, J D Boeke, H H Kazazian. Cell 1996
737
17

Pedigree-based estimation of human mobile element retrotransposition rates.
Julie Feusier, W Scott Watkins, Jainy Thomas, Andrew Farrell, David J Witherspoon, Lisa Baird, Hongseok Ha, Jinchuan Xing, Lynn B Jorde. Genome Res 2019
25
20

A comprehensive map of mobile element insertion polymorphisms in humans.
Chip Stewart, Deniz Kural, Michael P Strömberg, Jerilyn A Walker, Miriam K Konkel, Adrian M Stütz, Alexander E Urban, Fabian Grubert, Hugo Y K Lam, Wan-Ping Lee,[...]. PLoS Genet 2011
199
17

Restricting retrotransposons: a review.
John L Goodier. Mob DNA 2016
189
17

Mobile DNA in Health and Disease.
Haig H Kazazian, John V Moran. N Engl J Med 2017
140
17

Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition.
Alysson R Muotri, Vi T Chu, Maria C N Marchetto, Wei Deng, John V Moran, Fred H Gage. Nature 2005
603
17

L1 drives IFN in senescent cells and promotes age-associated inflammation.
Marco De Cecco, Takahiro Ito, Anna P Petrashen, Amy E Elias, Nicholas J Skvir, Steven W Criscione, Alberto Caligiana, Greta Brocculi, Emily M Adney, Jef D Boeke,[...]. Nature 2019
280
17

Regulatory evolution of innate immunity through co-option of endogenous retroviruses.
Edward B Chuong, Nels C Elde, Cédric Feschotte. Science 2016
367
17

Ubiquitous L1 mosaicism in hippocampal neurons.
Kyle R Upton, Daniel J Gerhardt, J Samuel Jesuadian, Sandra R Richardson, Francisco J Sánchez-Luque, Gabriela O Bodea, Adam D Ewing, Carmen Salvador-Palomeque, Marjo S van der Knaap, Paul M Brennan,[...]. Cell 2015
186
17

The Role of Somatic L1 Retrotransposition in Human Cancers.
Emma C Scott, Scott E Devine. Viruses 2017
43
17

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation.
Sergey Koren, Brian P Walenz, Konstantin Berlin, Jason R Miller, Nicholas H Bergman, Adam M Phillippy. Genome Res 2017
17

A robust benchmark for detection of germline large deletions and insertions.
Justin M Zook, Nancy F Hansen, Nathan D Olson, Lesley Chapman, James C Mullikin, Chunlin Xiao, Stephen Sherry, Sergey Koren, Adam M Phillippy, Paul C Boutros,[...]. Nat Biotechnol 2020
55
17

Discovery of unfixed endogenous retrovirus insertions in diverse human populations.
Julia Halo Wildschutte, Zachary H Williams, Meagan Montesion, Ravi P Subramanian, Jeffrey M Kidd, John M Coffin. Proc Natl Acad Sci U S A 2016
127
14


Transposable elements in cancer.
Kathleen H Burns. Nat Rev Cancer 2017
175
14

Genome-wide de novo L1 Retrotransposition Connects Endonuclease Activity with Replication.
Diane A Flasch, Ángela Macia, Laura Sánchez, Mats Ljungman, Sara R Heras, José L García-Pérez, Thomas E Wilson, John V Moran. Cell 2019
43
14

Alu repeats and human genomic diversity.
Mark A Batzer, Prescott L Deininger. Nat Rev Genet 2002
927
14

Somatic retrotransposition alters the genetic landscape of the human brain.
J Kenneth Baillie, Mark W Barnett, Kyle R Upton, Daniel J Gerhardt, Todd A Richmond, Fioravante De Sapio, Paul M Brennan, Patrizia Rizzu, Sarah Smith, Mark Fell,[...]. Nature 2011
441
14

L1 retrotransposition in human neural progenitor cells.
Nicole G Coufal, José L Garcia-Perez, Grace E Peng, Gene W Yeo, Yangling Mu, Michael T Lovci, Maria Morell, K Sue O'Shea, John V Moran, Fred H Gage. Nature 2009
527
14

Regulatory activities of transposable elements: from conflicts to benefits.
Edward B Chuong, Nels C Elde, Cédric Feschotte. Nat Rev Genet 2017
494
14

Transposable elements drive widespread expression of oncogenes in human cancers.
Hyo Sik Jang, Nakul M Shah, Alan Y Du, Zea Z Dailey, Erica C Pehrsson, Paula M Godoy, David Zhang, Daofeng Li, Xiaoyun Xing, Sungsu Kim,[...]. Nat Genet 2019
84
14

Mobile DNA in cancer. Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes.
Jose M C Tubio, Yilong Li, Young Seok Ju, Inigo Martincorena, Susanna L Cooke, Marta Tojo, Gunes Gundem, Christodoulos P Pipinikas, Jorge Zamora, Keiran Raine,[...]. Science 2014
221
14

Landscape of somatic retrotransposition in human cancers.
Eunjung Lee, Rebecca Iskow, Lixing Yang, Omer Gokcumen, Psalm Haseley, Lovelace J Luquette, Jens G Lohr, Christopher C Harris, Li Ding, Richard K Wilson,[...]. Science 2012
458
14

Accurate detection of complex structural variations using single-molecule sequencing.
Fritz J Sedlazeck, Philipp Rescheneder, Moritz Smolka, Han Fang, Maria Nattestad, Arndt von Haeseler, Michael C Schatz. Nat Methods 2018
390
14

Mobster: accurate detection of mobile element insertions in next generation sequencing data.
Djie Tjwan Thung, Joep de Ligt, Lisenka E M Vissers, Marloes Steehouwer, Mark Kroon, Petra de Vries, Eline P Slagboom, Kai Ye, Joris A Veltman, Jayne Y Hehir-Kwa. Genome Biol 2014
52
14

Structural variants caused by Alu insertions are associated with risks for many human diseases.
Lindsay M Payer, Jared P Steranka, Wan Rou Yang, Maria Kryatova, Sibyl Medabalimi, Daniel Ardeljan, Chunhong Liu, Jef D Boeke, Dimitri Avramopoulos, Kathleen H Burns. Proc Natl Acad Sci U S A 2017
55
14

Single-neuron sequencing analysis of L1 retrotransposition and somatic mutation in the human brain.
Gilad D Evrony, Xuyu Cai, Eunjung Lee, L Benjamin Hills, Princess C Elhosary, Hillel S Lehmann, J J Parker, Kutay D Atabay, Edward C Gilmore, Annapurna Poduri,[...]. Cell 2012
331
14

Resolving rates of mutation in the brain using single-neuron genomics.
Gilad D Evrony, Eunjung Lee, Peter J Park, Christopher A Walsh. Elife 2016
90
14

An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons.
Frank M J Jacobs, David Greenberg, Ngan Nguyen, Maximilian Haeussler, Adam D Ewing, Sol Katzman, Benedict Paten, Sofie R Salama, David Haussler. Nature 2014
234
14

SVA elements: a hominid-specific retroposon family.
Hui Wang, Jinchuan Xing, Deepak Grover, Dale J Hedges, Kyudong Han, Jerilyn A Walker, Mark A Batzer. J Mol Biol 2005
216
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.