A citation-based method for searching scientific literature

Lyudmila Dimitrova-Paternoga, Pravin Kumar Ankush Jagtap, Po-Chia Chen, Janosch Hennig. Structure 2020
Times Cited: 10







List of co-cited articles
27 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A brave new world of RNA-binding proteins.
Matthias W Hentze, Alfredo Castello, Thomas Schwarzl, Thomas Preiss. Nat Rev Mol Cell Biol 2018
431
30

The Clothes Make the mRNA: Past and Present Trends in mRNP Fashion.
Guramrit Singh, Gabriel Pratt, Gene W Yeo, Melissa J Moore. Annu Rev Biochem 2015
194
30

Molecular choreography of pre-mRNA splicing by the spliceosome.
Ruixue Wan, Rui Bai, Yigong Shi. Curr Opin Struct Biol 2019
14
20


NMRPipe: a multidimensional spectral processing system based on UNIX pipes.
F Delaglio, S Grzesiek, G W Vuister, G Zhu, J Pfeifer, A Bax. J Biomol NMR 1995
20

The CCPN data model for NMR spectroscopy: development of a software pipeline.
Wim F Vranken, Wayne Boucher, Tim J Stevens, Rasmus H Fogh, Anne Pajon, Miguel Llinas, Eldon L Ulrich, John L Markley, John Ionides, Ernest D Laue. Proteins 2005
20

RNA 5-Methylcytosine Facilitates the Maternal-to-Zygotic Transition by Preventing Maternal mRNA Decay.
Ying Yang, Lu Wang, Xiao Han, Wen-Lan Yang, Mengmeng Zhang, Hai-Li Ma, Bao-Fa Sun, Ang Li, Jun Xia, Jing Chen,[...]. Mol Cell 2019
67
20

A census of human RNA-binding proteins.
Stefanie Gerstberger, Markus Hafner, Thomas Tuschl. Nat Rev Genet 2014
807
20

ARIA2: automated NOE assignment and data integration in NMR structure calculation.
Wolfgang Rieping, Michael Habeck, Benjamin Bardiaux, Aymeric Bernard, Thérèse E Malliavin, Michael Nilges. Bioinformatics 2007
357
20

Comprehensive analysis of NMR data using advanced line shape fitting.
Markus Niklasson, Renee Otten, Alexandra Ahlner, Cecilia Andresen, Judith Schlagnitweit, Katja Petzold, Patrik Lundström. J Biomol NMR 2017
22
20


PINT: a software for integration of peak volumes and extraction of relaxation rates.
Alexandra Ahlner, Mats Carlsson, Bengt-Harald Jonsson, Patrik Lundström. J Biomol NMR 2013
41
20

Breaking the protein-RNA recognition code.
Janosch Hennig, Fatima Gebauer, Michael Sattler. Cell Cycle 2014
11
20

ATSAS 2.8: a comprehensive data analysis suite for small-angle scattering from macromolecular solutions.
D Franke, M V Petoukhov, P V Konarev, A Panjkovich, A Tuukkanen, H D T Mertens, A G Kikhney, N R Hajizadeh, J M Franklin, C M Jeffries,[...]. J Appl Crystallogr 2017
592
20

Structural basis for the assembly of the Sxl-Unr translation regulatory complex.
Janosch Hennig, Cristina Militti, Grzegorz M Popowicz, Iren Wang, Miriam Sonntag, Arie Geerlof, Frank Gabel, Fátima Gebauer, Michael Sattler. Nature 2014
74
20

NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy.
Woonghee Lee, Marco Tonelli, John L Markley. Bioinformatics 2015
653
20

m6A modulates neuronal functions and sex determination in Drosophila.
Tina Lence, Junaid Akhtar, Marc Bayer, Katharina Schmid, Laura Spindler, Cheuk Hei Ho, Nastasja Kreim, Miguel A Andrade-Navarro, Burkhard Poeck, Mark Helm,[...]. Nature 2016
230
20

Visualizing the structure and motion of the long noncoding RNA HOTAIR.
Rachel Spokoini-Stern, Dimitar Stamov, Hadass Jessel, Lior Aharoni, Heiko Haschke, Jonathan Giron, Ron Unger, Eran Segal, Almogit Abu-Horowitz, Ido Bachelet. RNA 2020
8
25

Computational modeling of RNA 3D structure based on experimental data.
Almudena Ponce-Salvatierra, Astha, Katarzyna Merdas, Chandran Nithin, Pritha Ghosh, Sunandan Mukherjee, Janusz M Bujnicki. Biosci Rep 2019
16
20

Spatial Organization of Single mRNPs at Different Stages of the Gene Expression Pathway.
Srivathsan Adivarahan, Nathan Livingston, Beth Nicholson, Samir Rahman, Bin Wu, Olivia S Rissland, Daniel Zenklusen. Mol Cell 2018
53
20

Principles and properties of eukaryotic mRNPs.
Sarah F Mitchell, Roy Parker. Mol Cell 2014
194
20

How RNA-Binding Proteins Interact with RNA: Molecules and Mechanisms.
Meredith Corley, Margaret C Burns, Gene W Yeo. Mol Cell 2020
57
20

The Organizing Principles of Eukaryotic Ribosome Recruitment.
Jerry Pelletier, Nahum Sonenberg. Annu Rev Biochem 2019
52
20


Structural imprints in vivo decode RNA regulatory mechanisms.
Robert C Spitale, Ryan A Flynn, Qiangfeng Cliff Zhang, Pete Crisalli, Byron Lee, Jong-Wha Jung, Hannes Y Kuchelmeister, Pedro J Batista, Eduardo A Torre, Eric T Kool,[...]. Nature 2015
367
20

The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3.
Colleen A McHugh, Chun-Kan Chen, Amy Chow, Christine F Surka, Christina Tran, Patrick McDonel, Amy Pandya-Jones, Mario Blanco, Christina Burghard, Annie Moradian,[...]. Nature 2015
586
20

Advances and challenges in the detection of transcriptome-wide protein-RNA interactions.
Emily C Wheeler, Eric L Van Nostrand, Gene W Yeo. Wiley Interdiscip Rev RNA 2018
73
20

Cyclin L is an RS domain protein involved in pre-mRNA splicing.
Liliane A Dickinson, Alasdair J Edgar, Jennifer Ehley, Joel M Gottesfeld. J Biol Chem 2002
83
10

CDK8 Kinase Activity Promotes Glycolysis.
Matthew D Galbraith, Zdenek Andrysik, Ahwan Pandey, Maria Hoh, Elizabeth A Bonner, Amanda A Hill, Kelly D Sullivan, Joaquín M Espinosa. Cell Rep 2017
35
10

CDC2L5, a Cdk-like kinase with RS domain, interacts with the ASF/SF2-associated protein p32 and affects splicing in vivo.
Yasmine Even, Sandrine Durieux, Marie-Line Escande, Jean Claude Lozano, Gérard Peaucellier, Dominique Weil, Anne-Marie Genevière. J Cell Biochem 2006
43
10

The Mediator Complex: At the Nexus of RNA Polymerase II Transcription.
Célia Jeronimo, François Robert. Trends Cell Biol 2017
92
10

Cdks, cyclins and CKIs: roles beyond cell cycle regulation.
Shuhui Lim, Philipp Kaldis. Development 2013
759
10

The pol II CTD: new twists in the tail.
Justyna Zaborowska, Sylvain Egloff, Shona Murphy. Nat Struct Mol Biol 2016
96
10

Cyclin-Dependent Kinase 11 (CDK11) Is Required for Ovarian Cancer Cell Growth In Vitro and In Vivo, and Its Inhibition Causes Apoptosis and Sensitizes Cells to Paclitaxel.
Xianzhe Liu, Yan Gao, Jacson Shen, Wen Yang, Edwin Choy, Henry Mankin, Francis J Hornicek, Zhenfeng Duan. Mol Cancer Ther 2016
21
10

Writing a wrong: Coupled RNA polymerase II transcription and RNA quality control.
Sarah A Peck, Katlyn D Hughes, Jose F Victorino, Amber L Mosley. Wiley Interdiscip Rev RNA 2019
13
10

Cyclin-dependent kinases: a family portrait.
Marcos Malumbres, Edward Harlow, Tim Hunt, Tony Hunter, Jill M Lahti, Gerard Manning, David O Morgan, Li-Huei Tsai, Debra J Wolgemuth. Nat Cell Biol 2009
236
10

Transcriptional activation of CBFβ by CDK11p110 is necessary to promote osteosarcoma cell proliferation.
Yong Feng, Yunfei Liao, Jianming Zhang, Jacson Shen, Zengwu Shao, Francis Hornicek, Zhenfeng Duan. Cell Commun Signal 2019
6
16

Cyclin L1 (CCNL1) gene alterations in human head and neck squamous cell carcinoma.
D Muller, R Millon, S Théobald, T Hussenet, B Wasylyk, S du Manoir, J Abecassis. Br J Cancer 2006
12
10

Suppression of Myc oncogenic activity by ribosomal protein haploinsufficiency.
Maria Barna, Aya Pusic, Ornella Zollo, Maria Costa, Nadya Kondrashov, Eduardo Rego, Pulivarthi H Rao, Davide Ruggero. Nature 2008
272
10

Phylogenetic analysis reveals the evolution and diversification of cyclins in eukaryotes.
Zhaowu Ma, Yuliang Wu, Jialu Jin, Jun Yan, Shuzhen Kuang, Mi Zhou, Yuexuan Zhang, An-Yuan Guo. Mol Phylogenet Evol 2013
19
10

Amplification of Cyclin L1 is associated with lymph node metastases in head and neck squamous cell carcinoma (HNSCC).
C Sticht, C Hofele, C Flechtenmacher, F X Bosch, K Freier, P Lichter, S Joos. Br J Cancer 2005
38
10

Atypical cyclins: the extended family portrait.
Eva Quandt, Mariana P C Ribeiro, Josep Clotet. Cell Mol Life Sci 2020
10
10

Critical role of CDK11(p58) in human breast cancer growth and angiogenesis.
Yayun Chi, Sheng Huang, Haojie Peng, Mengying Liu, Jun Zhao, Zhiming Shao, Jiong Wu. BMC Cancer 2015
7
14

PITSLRE p110 protein kinases associate with transcription complexes and affect their activity.
Janeen H Trembley, Dongli Hu, Li-Chung Hsu, Cho-Yau Yeung, Clive Slaughter, Jill M Lahti, Vincent J Kidd. J Biol Chem 2002
68
10

Overexpression of cyclin L2 inhibits growth and enhances chemosensitivity in human gastric cancer cells.
Hong-Li Li, Ding-Zhi Huang, Ting Deng, Li-Kun Zhou, Xia Wang, Ming Bai, Yi Ba. Asian Pac J Cancer Prev 2012
8
12

Human TFIIH Kinase CDK7 Regulates Transcription-Associated Chromatin Modifications.
Christopher C Ebmeier, Benjamin Erickson, Benjamin L Allen, Mary A Allen, Hyunmin Kim, Nova Fong, Jeremy R Jacobsen, Kaiwei Liang, Ali Shilatifard, Robin D Dowell,[...]. Cell Rep 2017
53
10

CDK11 Loss Induces Cell Cycle Dysfunction and Death of BRAF and NRAS Melanoma Cells.
Rehana L Ahmed, Daniel P Shaughnessy, Todd P Knutson, Rachel I Vogel, Khalil Ahmed, Betsy T Kren, Janeen H Trembley. Pharmaceuticals (Basel) 2019
5
20


CDK11p46 and RPS8 associate with each other and suppress translation in a synergistic manner.
Yuqing Hao, Xiangfei Kong, Yuanyuan Ruan, Huachen Gan, Hong Chen, Chunyi Zhang, Shifang Ren, Jianxin Gu. Biochem Biophys Res Commun 2011
12
10

Androgen receptor is a potential novel prognostic marker and oncogenic target in osteosarcoma with dependence on CDK11.
Yunfei Liao, Slim Sassi, Stefan Halvorsen, Yong Feng, Jacson Shen, Yan Gao, Gregory Cote, Edwin Choy, David Harmon, Henry Mankin,[...]. Sci Rep 2017
6
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.