A citation-based method for searching scientific literature

Daniel Nätt, Unn Kugelberg, Eduard Casas, Elizabeth Nedstrand, Stefan Zalavary, Pontus Henriksson, Carola Nijm, Julia Jäderquist, Johanna Sandborg, Eva Flinke, Rashmi Ramesh, Lovisa Örkenby, Filip Appelkvist, Thomas Lingg, Nicola Guzzi, Cristian Bellodi, Marie Löf, Tanya Vavouri, Anita Öst. PLoS Biol 2019
Times Cited: 53







List of co-cited articles
553 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Sperm tsRNAs contribute to intergenerational inheritance of an acquired metabolic disorder.
Qi Chen, Menghong Yan, Zhonghong Cao, Xin Li, Yunfang Zhang, Junchao Shi, Gui-hai Feng, Hongying Peng, Xudong Zhang, Ying Zhang,[...]. Science 2016
611
79

Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals.
Upasna Sharma, Colin C Conine, Jeremy M Shea, Ana Boskovic, Alan G Derr, Xin Y Bing, Clemence Belleannee, Alper Kucukural, Ryan W Serra, Fengyun Sun,[...]. Science 2016
600
60

Dnmt2 mediates intergenerational transmission of paternally acquired metabolic disorders through sperm small non-coding RNAs.
Yunfang Zhang, Xudong Zhang, Junchao Shi, Francesca Tuorto, Xin Li, Yusheng Liu, Reinhard Liebers, Liwen Zhang, Yongcun Qu, Jingjing Qian,[...]. Nat Cell Biol 2018
163
54

RNA-mediated paternal heredity of diet-induced obesity and metabolic disorders.
Valérie Grandjean, Sandra Fourré, Diana Andrea Fernandes De Abreu, Marie-Alix Derieppe, Jean-Jacques Remy, Minoo Rassoulzadegan. Sci Rep 2015
194
39

Sperm RNA code programmes the metabolic health of offspring.
Yunfang Zhang, Junchao Shi, Minoo Rassoulzadegan, Francesca Tuorto, Qi Chen. Nat Rev Endocrinol 2019
72
35

A novel class of tRNA-derived small RNAs extremely enriched in mature mouse sperm.
Hongying Peng, Junchao Shi, Ying Zhang, He Zhang, Shangying Liao, Wei Li, Li Lei, Chunsheng Han, Lina Ning, Yujing Cao,[...]. Cell Res 2012
190
35

Implication of sperm RNAs in transgenerational inheritance of the effects of early trauma in mice.
Katharina Gapp, Ali Jawaid, Peter Sarkies, Johannes Bohacek, Pawel Pelczar, Julien Prados, Laurent Farinelli, Eric Miska, Isabelle M Mansuy. Nat Neurosci 2014
616
33

Maternal overnutrition programs hedonic and metabolic phenotypes across generations through sperm tsRNAs.
Gitalee Sarker, Wenfei Sun, David Rosenkranz, Pawel Pelczar, Lennart Opitz, Vissarion Efthymiou, Christian Wolfrum, Daria Peleg-Raibstein. Proc Natl Acad Sci U S A 2019
56
30

Small RNAs Are Trafficked from the Epididymis to Developing Mammalian Sperm.
Upasna Sharma, Fengyun Sun, Colin C Conine, Brian Reichholf, Shweta Kukreja, Veronika A Herzog, Stefan L Ameres, Oliver J Rando. Dev Cell 2018
146
28

Paternal obesity initiates metabolic disturbances in two generations of mice with incomplete penetrance to the F2 generation and alters the transcriptional profile of testis and sperm microRNA content.
Tod Fullston, E Maria C Ohlsson Teague, Nicole O Palmer, Miles J DeBlasio, Megan Mitchell, Mark Corbett, Cristin G Print, Julie A Owens, Michelle Lane. FASEB J 2013
324
28

Identification of small non-coding RNAs as sperm quality biomarkers for in vitro fertilization.
Minmin Hua, Wei Liu, Ying Chen, Fengjuan Zhang, Beiying Xu, Suying Liu, Guowu Chen, Huijuan Shi, Ligang Wu. Cell Discov 2019
34
41

Small RNAs Gained during Epididymal Transit of Sperm Are Essential for Embryonic Development in Mice.
Colin C Conine, Fengyun Sun, Lina Song, Jaime A Rivera-Pérez, Oliver J Rando. Dev Cell 2018
136
26

Angiogenin cleaves tRNA and promotes stress-induced translational repression.
Satoshi Yamasaki, Pavel Ivanov, Guo-Fu Hu, Paul Anderson. J Cell Biol 2009
528
24

High-fat diet reprograms the epigenome of rat spermatozoa and transgenerationally affects metabolism of the offspring.
Thais de Castro Barbosa, Lars R Ingerslev, Petter S Alm, Soetkin Versteyhe, Julie Massart, Morten Rasmussen, Ida Donkin, Rasmus Sjögren, Jonathan M Mudry, Laurène Vetterli,[...]. Mol Metab 2015
180
24

LTR-Retrotransposon Control by tRNA-Derived Small RNAs.
Andrea J Schorn, Michael J Gutbrod, Chantal LeBlanc, Rob Martienssen. Cell 2017
178
22

Angiogenin-induced tRNA fragments inhibit translation initiation.
Pavel Ivanov, Mohamed M Emara, Judit Villen, Steven P Gygi, Paul Anderson. Mol Cell 2011
552
22

tRNA cleavage is a conserved response to oxidative stress in eukaryotes.
Debrah M Thompson, Cheng Lu, Pamela J Green, Roy Parker. RNA 2008
375
22

Paternally induced transgenerational environmental reprogramming of metabolic gene expression in mammals.
Benjamin R Carone, Lucas Fauquier, Naomi Habib, Jeremy M Shea, Caroline E Hart, Ruowang Li, Christoph Bock, Chengjian Li, Hongcang Gu, Phillip D Zamore,[...]. Cell 2010
707
22

Obesity and Bariatric Surgery Drive Epigenetic Variation of Spermatozoa in Humans.
Ida Donkin, Soetkin Versteyhe, Lars R Ingerslev, Kui Qian, Mie Mechta, Loa Nordkap, Brynjulf Mortensen, Emil Vincent R Appel, Niels Jørgensen, Viggo B Kristiansen,[...]. Cell Metab 2016
264
20


Transgenerational epigenetic programming via sperm microRNA recapitulates effects of paternal stress.
Ali B Rodgers, Christopher P Morgan, N Adrian Leu, Tracy L Bale. Proc Natl Acad Sci U S A 2015
358
20


Male-lineage transmission of an acquired metabolic phenotype induced by grand-paternal obesity.
Jennifer E Cropley, Sally A Eaton, Alastair Aiken, Paul E Young, Eleni Giannoulatou, Joshua W K Ho, Michael E Buckland, Simon P Keam, Gyorgy Hutvagner, David T Humphreys,[...]. Mol Metab 2016
93
18

Dynamic expression of tRNA-derived small RNAs define cellular states.
Srikar Krishna, Daniel Gr Yim, Vairavan Lakshmanan, Varsha Tirumalai, Judice Ly Koh, Jung Eun Park, Jit Kong Cheong, Joo Leng Low, Michelle Js Lim, Siu Kwan Sze,[...]. EMBO Rep 2019
49
18

Endogenous tRNA-Derived Fragments Suppress Breast Cancer Progression via YBX1 Displacement.
Hani Goodarzi, Xuhang Liu, Hoang C B Nguyen, Steven Zhang, Lisa Fish, Sohail F Tavazoie. Cell 2015
385
16

RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage.
Matthias Schaefer, Tim Pollex, Katharina Hanna, Francesca Tuorto, Madeleine Meusburger, Mark Helm, Frank Lyko. Genes Dev 2010
417
16

A transfer-RNA-derived small RNA regulates ribosome biogenesis.
Hak Kyun Kim, Gabriele Fuchs, Shengchun Wang, Wei Wei, Yue Zhang, Hyesuk Park, Biswajoy Roy-Chaudhuri, Pan Li, Jianpeng Xu, Kirk Chu,[...]. Nature 2017
183
16

Pseudouridylation of tRNA-Derived Fragments Steers Translational Control in Stem Cells.
Nicola Guzzi, Maciej Cieśla, Phuong Cao Thi Ngoc, Stefan Lang, Sonali Arora, Marios Dimitriou, Kristyna Pimková, Mikael N E Sommarin, Roberto Munita, Michal Lubas,[...]. Cell 2018
162
16


A sequence of 28S rRNA-derived small RNAs is enriched in mature sperm and various somatic tissues and possibly associates with inflammation.
Chen Chu, Lu Yu, Bin Wu, Li Ma, Lan-Tao Gou, Miao He, Yunli Guo, Zhi-Tong Li, Wei Gao, Huijuan Shi,[...]. J Mol Cell Biol 2017
29
31

RNA cytosine methylation by Dnmt2 and NSun2 promotes tRNA stability and protein synthesis.
Francesca Tuorto, Reinhard Liebers, Tanja Musch, Matthias Schaefer, Sarah Hofmann, Stefanie Kellner, Michaela Frye, Mark Helm, Georg Stoecklin, Frank Lyko. Nat Struct Mol Biol 2012
298
16

A novel class of small RNAs: tRNA-derived RNA fragments (tRFs).
Yong Sun Lee, Yoshiyuki Shibata, Ankit Malhotra, Anindya Dutta. Genes Dev 2009
658
15

Angiogenin-induced tRNA-derived stress-induced RNAs promote stress-induced stress granule assembly.
Mohamed M Emara, Pavel Ivanov, Tyler Hickman, Nemisha Dawra, Sarah Tisdale, Nancy Kedersha, Guo-Fu Hu, Paul Anderson. J Biol Chem 2010
306
15

In utero effects. In utero undernourishment perturbs the adult sperm methylome and intergenerational metabolism.
Elizabeth J Radford, Mitsuteru Ito, Hui Shi, Jennifer A Corish, Kazuki Yamazawa, Elvira Isganaitis, Stefanie Seisenberger, Timothy A Hore, Wolf Reik, Serap Erkek,[...]. Science 2014
382
15

Sperm-borne microRNA-34c is required for the first cleavage division in mouse.
Wei-Min Liu, Ronald T K Pang, Philip C N Chiu, Benancy P C Wong, Kaiqin Lao, Kai-Fai Lee, William S B Yeung. Proc Natl Acad Sci U S A 2012
257
15


tRNA fragments (tRFs) guide Ago to regulate gene expression post-transcriptionally in a Dicer-independent manner.
Canan Kuscu, Pankaj Kumar, Manjari Kiran, Zhangli Su, Asrar Malik, Anindya Dutta. RNA 2018
142
15

Alterations in sperm long RNA contribute to the epigenetic inheritance of the effects of postnatal trauma.
K Gapp, G van Steenwyk, P L Germain, W Matsushima, K L M Rudolph, F Manuella, M Roszkowski, G Vernaz, T Ghosh, P Pelczar,[...]. Mol Psychiatry 2020
54
15

SPORTS1.0: A Tool for Annotating and Profiling Non-coding RNAs Optimized for rRNA- and tRNA-derived Small RNAs.
Junchao Shi, Eun-A Ko, Kenton M Sanders, Qi Chen, Tong Zhou. Genomics Proteomics Bioinformatics 2018
39
20

PANDORA-seq expands the repertoire of regulatory small RNAs by overcoming RNA modifications.
Junchao Shi, Yunfang Zhang, Dongmei Tan, Xudong Zhang, Menghong Yan, Ying Zhang, Reuben Franklin, Marta Shahbazi, Kirsty Mackinlay, Shichao Liu,[...]. Nat Cell Biol 2021
27
29

Stressing out over tRNA cleavage.
Debrah M Thompson, Roy Parker. Cell 2009
283
13

Human tRNA-derived small RNAs in the global regulation of RNA silencing.
Dirk Haussecker, Yong Huang, Ashley Lau, Poornima Parameswaran, Andrew Z Fire, Mark A Kay. RNA 2010
447
13

Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs.
Christian Cole, Andrew Sobala, Cheng Lu, Shawn R Thatcher, Andrew Bowman, John W S Brown, Pamela J Green, Geoffrey J Barton, Gyorgy Hutvagner. RNA 2009
416
13

Stress induces tRNA cleavage by angiogenin in mammalian cells.
Hanjiang Fu, Junjun Feng, Qin Liu, Fang Sun, Yi Tie, Jie Zhu, Ruiyun Xing, Zhixian Sun, Xiaofei Zheng. FEBS Lett 2009
327
13

Disruption of histone methylation in developing sperm impairs offspring health transgenerationally.
Keith Siklenka, Serap Erkek, Maren Godmann, Romain Lambrot, Serge McGraw, Christine Lafleur, Tamara Cohen, Jianguo Xia, Matthew Suderman, Michael Hallett,[...]. Science 2015
248
13

A survey of small RNAs in human sperm.
Stephen A Krawetz, Adele Kruger, Claudia Lalancette, Rebecca Tagett, Ester Anton, Sorin Draghici, Michael P Diamond. Hum Reprod 2011
234
13

ATF7-Dependent Epigenetic Changes Are Required for the Intergenerational Effect of a Paternal Low-Protein Diet.
Keisuke Yoshida, Toshio Maekawa, Nhung Hong Ly, Shin-Ichiro Fujita, Masafumi Muratani, Minami Ando, Yuki Katou, Hiromitsu Araki, Fumihito Miura, Katsuhiko Shirahige,[...]. Mol Cell 2020
15
46

RNA-mediated non-mendelian inheritance of an epigenetic change in the mouse.
Minoo Rassoulzadegan, Valérie Grandjean, Pierre Gounon, Stéphane Vincent, Isabelle Gillot, François Cuzin. Nature 2006
548
13

Chronic high-fat diet in fathers programs β-cell dysfunction in female rat offspring.
Sheau-Fang Ng, Ruby C Y Lin, D Ross Laybutt, Romain Barres, Julie A Owens, Margaret J Morris. Nature 2010
826
13



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.