A citation-based method for searching scientific literature

Aaron M Fleming, Cynthia J Burrows. J Am Chem Soc 2020
Times Cited: 33







List of co-cited articles
444 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Oxidative DNA damage is epigenetic by regulating gene transcription via base excision repair.
Aaron M Fleming, Yun Ding, Cynthia J Burrows. Proc Natl Acad Sci U S A 2017
164
57


G-quadruplex structures mark human regulatory chromatin.
Robert Hänsel-Hertsch, Dario Beraldi, Stefanie V Lensing, Giovanni Marsico, Katherine Zyner, Aled Parry, Marco Di Antonio, Jeremy Pike, Hiroshi Kimura, Masashi Narita,[...]. Nat Genet 2016
353
30

High-throughput sequencing of DNA G-quadruplex structures in the human genome.
Vicki S Chambers, Giovanni Marsico, Jonathan M Boutell, Marco Di Antonio, Geoffrey P Smith, Shankar Balasubramanian. Nat Biotechnol 2015
537
27

The regulatory G4 motif of the Kirsten ras (KRAS) gene is sensitive to guanine oxidation: implications on transcription.
Susanna Cogoi, Annalisa Ferino, Giulia Miglietta, Erik B Pedersen, Luigi E Xodo. Nucleic Acids Res 2018
51
27

Human NEIL3 Gene Expression Regulated by Epigenetic-Like Oxidative DNA Modification.
Aaron M Fleming, Judy Zhu, Shereen A Howpay Manage, Cynthia J Burrows. J Am Chem Soc 2019
22
36

Prevalence of quadruplexes in the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2005
24

Impact of Oxidative Lesions on the Human Telomeric G-Quadruplex.
Stasė Bielskutė, Janez Plavec, Peter Podbevšek. J Am Chem Soc 2019
31
25

The NEIL glycosylases remove oxidized guanine lesions from telomeric and promoter quadruplex DNA structures.
Jia Zhou, Aaron M Fleming, April M Averill, Cynthia J Burrows, Susan S Wallace. Nucleic Acids Res 2015
86
24


Base-excision repair of oxidative DNA damage.
Sheila S David, Valerie L O'Shea, Sucharita Kundu. Nature 2007
739
24

G-quadruplexes and their regulatory roles in biology.
Daniela Rhodes, Hans J Lipps. Nucleic Acids Res 2015
707
24

Oxidative Modification of the Potential G-Quadruplex Sequence in the PCNA Gene Promoter Can Turn on Transcription.
Samuel C J Redstone, Aaron M Fleming, Cynthia J Burrows. Chem Res Toxicol 2019
28
25

Whole genome experimental maps of DNA G-quadruplexes in multiple species.
Giovanni Marsico, Vicki S Chambers, Aleksandr B Sahakyan, Patrick McCauley, Jonathan M Boutell, Marco Di Antonio, Shankar Balasubramanian. Nucleic Acids Res 2019
107
21

Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription.
Adam Siddiqui-Jain, Cory L Grand, David J Bearss, Laurence H Hurley. Proc Natl Acad Sci U S A 2002
21


Human AP endonuclease inefficiently removes abasic sites within G4 structures compared to duplex DNA.
Christopher Broxson, Jaclyn N Hayner, Joshua Beckett, Linda B Bloom, Silvia Tornaletti. Nucleic Acids Res 2014
23
30

Formation and processing of DNA damage substrates for the hNEIL enzymes.
Aaron M Fleming, Cynthia J Burrows. Free Radic Biol Med 2017
65
21

The regulation and functions of DNA and RNA G-quadruplexes.
Dhaval Varshney, Jochen Spiegel, Katherine Zyner, David Tannahill, Shankar Balasubramanian. Nat Rev Mol Cell Biol 2020
178
21


Epigenetic instability due to defective replication of structured DNA.
Peter Sarkies, Charlie Reams, Laura J Simpson, Julian E Sale. Mol Cell 2010
183
18

Quantitative visualization of DNA G-quadruplex structures in human cells.
Giulia Biffi, David Tannahill, John McCafferty, Shankar Balasubramanian. Nat Chem 2013
18

Human DNA Repair Genes Possess Potential G-Quadruplex Sequences in Their Promoters and 5'-Untranslated Regions.
Aaron M Fleming, Judy Zhu, Yun Ding, Joshua A Visser, Julia Zhu, Cynthia J Burrows. Biochemistry 2018
32
18

Oxidized Guanine Base Lesions Function in 8-Oxoguanine DNA Glycosylase-1-mediated Epigenetic Regulation of Nuclear Factor κB-driven Gene Expression.
Lang Pan, Bing Zhu, Wenjing Hao, Xianlu Zeng, Spiros A Vlahopoulos, Tapas K Hazra, Muralidhar L Hegde, Zsolt Radak, Attila Bacsi, Allan R Brasier,[...]. J Biol Chem 2016
92
18


8-Oxo-7,8-dihydroguanine in the Context of a Gene Promoter G-Quadruplex Is an On-Off Switch for Transcription.
Aaron M Fleming, Judy Zhu, Yun Ding, Cynthia J Burrows. ACS Chem Biol 2017
54
18

A Polymerase Theta-dependent repair pathway suppresses extensive genomic instability at endogenous G4 DNA sites.
Wouter Koole, Robin van Schendel, Andrea E Karambelas, Jane T van Heteren, Kristy L Okihara, Marcel Tijsterman. Nat Commun 2014
130
18

The Structure and Function of DNA G-Quadruplexes.
Jochen Spiegel, Santosh Adhikari, Shankar Balasubramanian. Trends Chem 2020
140
18


Determinants of G quadruplex-induced epigenetic instability in REV1-deficient cells.
Davide Schiavone, Guillaume Guilbaud, Pierre Murat, Charikleia Papadopoulou, Peter Sarkies, Marie-Noëlle Prioleau, Shankar Balasubramanian, Julian E Sale. EMBO J 2014
81
15


Short loop length and high thermal stability determine genomic instability induced by G-quadruplex-forming minisatellites.
Aurèle Piazza, Michael Adrian, Frédéric Samazan, Brahim Heddi, Florian Hamon, Alexandre Serero, Judith Lopes, Marie-Paule Teulade-Fichou, Anh Tuân Phan, Alain Nicolas. EMBO J 2015
83
15

The G4 genome.
Nancy Maizels, Lucas T Gray. PLoS Genet 2013
316
15

FANCJ coordinates two pathways that maintain epigenetic stability at G-quadruplex DNA.
Peter Sarkies, Pierre Murat, Lara G Phillips, K J Patel, Shankar Balasubramanian, Julian E Sale. Nucleic Acids Res 2012
143
15

Genome-wide mapping of 8-oxo-7,8-dihydro-2'-deoxyguanosine reveals accumulation of oxidatively-generated damage at DNA replication origins within transcribed long genes of mammalian cells.
Stefano Amente, Giacomo Di Palo, Giovanni Scala, Tiziana Castrignanò, Francesca Gorini, Sergio Cocozza, Angela Moresano, Piero Pucci, Bin Ma, Irina Stepanov,[...]. Nucleic Acids Res 2019
32
15



Promoter G-quadruplex sequences are targets for base oxidation and strand cleavage during hypoxia-induced transcription.
David W Clark, Tzu Phang, Michael G Edwards, Mark W Geraci, Mark N Gillespie. Free Radic Biol Med 2012
45
15


An oxidative DNA "damage" and repair mechanism localized in the VEGF promoter is important for hypoxia-induced VEGF mRNA expression.
Viktor Pastukh, Justin T Roberts, David W Clark, Gina C Bardwell, Mita Patel, Abu-Bakr Al-Mehdi, Glen M Borchert, Mark N Gillespie. Am J Physiol Lung Cell Mol Physiol 2015
82
15


DNA oxidation as triggered by H3K9me2 demethylation drives estrogen-induced gene expression.
Bruno Perillo, Maria Neve Ombra, Alessandra Bertoni, Concetta Cuozzo, Silvana Sacchetti, Annarita Sasso, Lorenzo Chiariotti, Antonio Malorni, Ciro Abbondanza, Enrico V Avvedimento. Science 2008
357
15

One-electron oxidation reactions of purine and pyrimidine bases in cellular DNA.
Jean Cadet, J Richard Wagner, Vladimir Shafirovich, Nicholas E Geacintov. Int J Radiat Biol 2014
78
15


Small-molecule-induced DNA damage identifies alternative DNA structures in human genes.
Raphaël Rodriguez, Kyle M Miller, Josep V Forment, Charles R Bradshaw, Mehran Nikan, Sébastien Britton, Tobias Oelschlaegel, Blerta Xhemalce, Shankar Balasubramanian, Stephen P Jackson. Nat Chem Biol 2012
405
15

Trinucleotide repeat disorders.
Harry T Orr, Huda Y Zoghbi. Annu Rev Neurosci 2007
972
12

Quadruplex DNA: sequence, topology and structure.
Sarah Burge, Gary N Parkinson, Pascale Hazel, Alan K Todd, Stephen Neidle. Nucleic Acids Res 2006
12

Targeting G-quadruplexes in gene promoters: a novel anticancer strategy?
Shankar Balasubramanian, Laurence H Hurley, Stephen Neidle. Nat Rev Drug Discov 2011
12

SIRT1 gene expression upon genotoxic damage is regulated by APE1 through nCaRE-promoter elements.
Giulia Antoniali, Lisa Lirussi, Chiara D'Ambrosio, Fabrizio Dal Piaz, Carlo Vascotto, Elena Casarano, Daniela Marasco, Andrea Scaloni, Federico Fogolari, Gianluca Tell. Mol Biol Cell 2014
55
12

Permanganate/S1 Nuclease Footprinting Reveals Non-B DNA Structures with Regulatory Potential across a Mammalian Genome.
Fedor Kouzine, Damian Wojtowicz, Laura Baranello, Arito Yamane, Steevenson Nelson, Wolfgang Resch, Kyong-Rim Kieffer-Kwon, Craig J Benham, Rafael Casellas, Teresa M Przytycka,[...]. Cell Syst 2017
76
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.