A citation-based method for searching scientific literature

Sahana Holla, Jothy Dhakshnamoorthy, H Diego Folco, Vanivilasini Balachandran, Hua Xiao, Ling-Ling Sun, David Wheeler, Martin Zofall, Shiv I S Grewal. Cell 2020
Times Cited: 25







List of co-cited articles
277 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


FACT caught in the act of manipulating the nucleosome.
Yang Liu, Keda Zhou, Naifu Zhang, Hui Wei, Yong Zi Tan, Zhening Zhang, Bridget Carragher, Clinton S Potter, Sheena D'Arcy, Karolin Luger. Nature 2020
53
28

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
24

The chromatin-remodeling factor FACT contributes to centromeric heterochromatin independently of RNAi.
Erwan Lejeune, Miriam Bortfeld, Sharon A White, Alison L Pidoux, Karl Ekwall, Robin C Allshire, Andreas G Ladurner. Curr Biol 2007
65
24

Heterochromatin revisited.
Shiv I S Grewal, Songtao Jia. Nat Rev Genet 2007
867
24

Roles of the Clr4 methyltransferase complex in nucleation, spreading and maintenance of heterochromatin.
Ke Zhang, Kerstin Mosch, Wolfgang Fischle, Shiv I S Grewal. Nat Struct Mol Biol 2008
248
24

LBR and lamin A/C sequentially tether peripheral heterochromatin and inversely regulate differentiation.
Irina Solovei, Audrey S Wang, Katharina Thanisch, Christine S Schmidt, Stefan Krebs, Monika Zwerger, Tatiana V Cohen, Didier Devys, Roland Foisner, Leo Peichl,[...]. Cell 2013
447
24

Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly.
J Nakayama , J C Rice, B D Strahl, C D Allis, S I Grewal. Science 2001
24

Chromatin replication and epigenetic cell memory.
Kathleen R Stewart-Morgan, Nataliya Petryk, Anja Groth. Nat Cell Biol 2020
44
24

Topological domains in mammalian genomes identified by analysis of chromatin interactions.
Jesse R Dixon, Siddarth Selvaraj, Feng Yue, Audrey Kim, Yan Li, Yin Shen, Ming Hu, Jun S Liu, Bing Ren. Nature 2012
20

Control of heterochromatin localization and silencing by the nuclear membrane protein Lem2.
Ramón Ramos Barrales, Marta Forn, Paula Raluca Georgescu, Zsuzsa Sarkadi, Sigurd Braun. Genes Dev 2016
59
20


Native Chromatin Proteomics Reveals a Role for Specific Nucleoporins in Heterochromatin Organization and Maintenance.
Nahid Iglesias, Joao A Paulo, Antonis Tatarakis, Xiaoyi Wang, Amanda L Edwards, Natarajan V Bhanu, Benjamin A Garcia, Wilhelm Haas, Steven P Gygi, Danesh Moazed. Mol Cell 2020
20
25

The Chaperone FACT and Histone H2B Ubiquitination Maintain S. pombe Genome Architecture through Genic and Subtelomeric Functions.
Magdalena Murawska, Tamas Schauer, Atsushi Matsuda, Marcus D Wilson, Thomas Pysik, Felix Wojcik, Tom W Muir, Yasushi Hiraoka, Tobias Straub, Andreas G Ladurner. Mol Cell 2020
15
33

Epigenetics. Epigenetic inheritance uncoupled from sequence-specific recruitment.
Kaushik Ragunathan, Gloria Jih, Danesh Moazed. Science 2015
159
20

Epigenetics. Restricted epigenetic inheritance of H3K9 methylation.
Pauline N C B Audergon, Sandra Catania, Alexander Kagansky, Pin Tong, Manu Shukla, Alison L Pidoux, Robin C Allshire. Science 2015
142
20

Ten principles of heterochromatin formation and function.
Robin C Allshire, Hiten D Madhani. Nat Rev Mol Cell Biol 2018
200
20

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
16

Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
16

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
16

Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
Erez Lieberman-Aiden, Nynke L van Berkum, Louise Williams, Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R Lajoie, Peter J Sabo, Michael O Dorschner,[...]. Science 2009
16

Cell cycle control of centromeric repeat transcription and heterochromatin assembly.
Ee Sin Chen, Ke Zhang, Estelle Nicolas, Hugh P Cam, Martin Zofall, Shiv I S Grewal. Nature 2008
268
16

Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi.
Thomas A Volpe, Catherine Kidner, Ira M Hall, Grace Teng, Shiv I S Grewal, Robert A Martienssen. Science 2002
16

Epigenetic Regulation of Chromatin States in Schizosaccharomyces pombe.
Robin C Allshire, Karl Ekwall. Cold Spring Harb Perspect Biol 2015
102
16

HP1 reshapes nucleosome core to promote phase separation of heterochromatin.
S Sanulli, M J Trnka, V Dharmarajan, R W Tibble, B D Pascal, A L Burlingame, P R Griffin, J D Gross, G J Narlikar. Nature 2019
146
16

Establishment and maintenance of a heterochromatin domain.
Ira M Hall, Gurumurthy D Shankaranarayana, Ken-Ichi Noma, Nabieh Ayoub, Amikam Cohen, Shiv I S Grewal. Science 2002
643
16


A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Suhas S P Rao, Miriam H Huntley, Neva C Durand, Elena K Stamenova, Ivan D Bochkov, James T Robinson, Adrian L Sanborn, Ido Machol, Arina D Omer, Eric S Lander,[...]. Cell 2014
16


Functional roles of the DNA-binding HMGB domain in the histone chaperone FACT in nucleosome reorganization.
Laura L McCullough, Zaily Connell, Hua Xin, Vasily M Studitsky, Alexey V Feofanov, Maria E Valieva, Tim Formosa. J Biol Chem 2018
25
16

Active and Repressed Chromatin Domains Exhibit Distinct Nucleosome Segregation during DNA Replication.
Thelma M Escobar, Ozgur Oksuz, Ricardo Saldaña-Meyer, Nicolas Descostes, Roberto Bonasio, Danny Reinberg. Cell 2019
43
16

The Mcm2-Ctf4-Polα Axis Facilitates Parental Histone H3-H4 Transfer to Lagging Strands.
Haiyun Gan, Albert Serra-Cardona, Xu Hua, Hui Zhou, Karim Labib, Chuanhe Yu, Zhiguo Zhang. Mol Cell 2018
57
16

FACT, a factor that facilitates transcript elongation through nucleosomes.
G Orphanides, G LeRoy, C H Chang, D S Luse, D Reinberg. Cell 1998
472
16

Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain.
A J Bannister, P Zegerman, J F Partridge, E A Miska, J O Thomas, R C Allshire, T Kouzarides. Nature 2001
16

The nucleation and maintenance of heterochromatin by a histone deacetylase in fission yeast.
Takatomi Yamada, Wolfgang Fischle, Tomoyasu Sugiyama, C David Allis, Shiv I S Grewal. Mol Cell 2005
212
16

Rapid epigenetic adaptation to uncontrolled heterochromatin spreading.
Jiyong Wang, Bharat D Reddy, Songtao Jia. Elife 2015
45
16

RNA elimination machinery targeting meiotic mRNAs promotes facultative heterochromatin formation.
Martin Zofall, Soichiro Yamanaka, Francisca E Reyes-Turcu, Ke Zhang, Chanan Rubin, Shiv I S Grewal. Science 2012
125
16

HDAC-mediated suppression of histone turnover promotes epigenetic stability of heterochromatin.
Ozan Aygün, Sameet Mehta, Shiv I S Grewal. Nat Struct Mol Biol 2013
77
16

Iron homeostasis regulates facultative heterochromatin assembly in adaptive genome control.
Pamela S Gallagher, Madeline Larkin, Gobi Thillainadesan, Jothy Dhakshnamoorthy, Vanivilasini Balachandran, Hua Xiao, Christopher Wellman, Raghunath Chatterjee, David Wheeler, Shiv I S Grewal. Nat Struct Mol Biol 2018
17
23

Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
12

Spatial partitioning of the regulatory landscape of the X-inactivation centre.
Elphège P Nora, Bryan R Lajoie, Edda G Schulz, Luca Giorgetti, Ikuhiro Okamoto, Nicolas Servant, Tristan Piolot, Nynke L van Berkum, Johannes Meisig, John Sedat,[...]. Nature 2012
12



deepTools2: a next generation web server for deep-sequencing data analysis.
Fidel Ramírez, Devon P Ryan, Björn Grüning, Vivek Bhardwaj, Fabian Kilpert, Andreas S Richter, Steffen Heyne, Friederike Dündar, Thomas Manke. Nucleic Acids Res 2016
12

Directed targeting of chromatin to the nuclear lamina is mediated by chromatin state and A-type lamins.
Jennifer C Harr, Teresa Romeo Luperchio, Xianrong Wong, Erez Cohen, Sarah J Wheelan, Karen L Reddy. J Cell Biol 2015
154
12

HTSeq--a Python framework to work with high-throughput sequencing data.
Simon Anders, Paul Theodor Pyl, Wolfgang Huber. Bioinformatics 2015
12

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
12

Hap2-Ino80-facilitated transcription promotes de novo establishment of CENP-A chromatin.
Puneet P Singh, Manu Shukla, Sharon A White, Marcel Lafos, Pin Tong, Tatsiana Auchynnikava, Christos Spanos, Juri Rappsilber, Alison L Pidoux, Robin C Allshire. Genes Dev 2020
5
60

Distinct 'safe zones' at the nuclear envelope ensure robust replication of heterochromatic chromosome regions.
Hani Ebrahimi, Hirohisa Masuda, Devanshi Jain, Julia Promisel Cooper. Elife 2018
13
23


Stc1: a critical link between RNAi and chromatin modification required for heterochromatin integrity.
Elizabeth H Bayne, Sharon A White, Alexander Kagansky, Dominika A Bijos, Luis Sanchez-Pulido, Kwang-Lae Hoe, Dong-Uk Kim, Han-Oh Park, Chris P Ponting, Juri Rappsilber,[...]. Cell 2010
145
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.