A citation-based method for searching scientific literature

Parithi Balachandran, Christine R Beck. Chromosome Res 2020
Times Cited: 4







List of co-cited articles
2 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Cellular and genomic approaches for exploring structural chromosomal rearrangements.
Qing Hu, Elizabeth G Maurais, Peter Ly. Chromosome Res 2020
6
50

Genomic methods in profiling DNA accessibility and factor localization.
David C Klein, Sarah J Hainer. Chromosome Res 2020
15
50

Bacterial chromosome origins of replication.
G T Marczynski, L Shapiro. Curr Opin Genet Dev 1993
23
25

A genomic view of eukaryotic DNA replication.
David M MacAlpine, Stephen P Bell. Chromosome Res 2005
87
25

Mapping replication origins in yeast chromosomes.
B J Brewer, W L Fangman. Bioessays 1991
77
25

Visual mapping by fiber-FISH.
M Heiskanen, E Hellsten, O P Kallioniemi, T P Mäkelä, K Alitalo, L Peltonen, A Palotie. Genomics 1995
70
25


Probing the function of long noncoding RNAs in the nucleus.
Sajal Medha K Akkipeddi, Anthony J Velleca, Dawn M Carone. Chromosome Res 2020
5
25



Genomic methods for measuring DNA replication dynamics.
Michelle L Hulke, Dashiell J Massey, Amnon Koren. Chromosome Res 2020
5
25


Application and prospects of CRISPR/Cas9-based methods to trace defined genomic sequences in living and fixed plant cells.
Solmaz Khosravi, Takayoshi Ishii, Steven Dreissig, Andreas Houben. Chromosome Res 2020
5
25

The sequence of the human genome.
J C Venter, M D Adams, E W Myers, P W Li, R J Mural, G G Sutton, H O Smith, M Yandell, C A Evans, R A Holt,[...]. Science 2001
25

Phenotypic impact of genomic structural variation: insights from and for human disease.
Joachim Weischenfeldt, Orsolya Symmons, François Spitz, Jan O Korbel. Nat Rev Genet 2013
244
25




Chromosome banding.
D E Comings. J Histochem Cytochem 1975
12
25

Herbert Macgregor (1933-2018).
Joseph G Gall. Chromosome Res 2018
2
50

CNV_IFTV: An Isolation Forest and Total Variation-Based Detection of CNVs from Short-Read Sequencing Data.
Xiguo Yuan, Jiaao Yu, Jianing Xi, Liying Yang, Junliang Shang, Zhe Li, Junbo Duan. IEEE/ACM Trans Comput Biol Bioinform 2021
9
25

Tandem duplication of chromosomal segments is common in ovarian and breast cancer genomes.
David J McBride, Dariush Etemadmoghadam, Susanna L Cooke, Kathryn Alsop, Joshy George, Adam Butler, Juok Cho, Danushka Galappaththige, Chris Greenman, Karen D Howarth,[...]. J Pathol 2012
61
25

DELLY: structural variant discovery by integrated paired-end and split-read analysis.
Tobias Rausch, Thomas Zichner, Andreas Schlattl, Adrian M Stütz, Vladimir Benes, Jan O Korbel. Bioinformatics 2012
803
25


Discovery and genotyping of novel sequence insertions in many sequenced individuals.
Pinar Kavak, Yen-Yi Lin, Ibrahim Numanagic, Hossein Asghari, Tunga Güngör, Can Alkan, Faraz Hach. Bioinformatics 2017
9
25

ReadDepth: a parallel R package for detecting copy number alterations from short sequencing reads.
Christopher A Miller, Oliver Hampton, Cristian Coarfa, Aleksandar Milosavljevic. PLoS One 2011
117
25

Genome-wide identification of significant aberrations in cancer genome.
Xiguo Yuan, Guoqiang Yu, Xuchu Hou, Ie-Ming Shih, Robert Clarke, Junying Zhang, Eric P Hoffman, Roger R Wang, Zhen Zhang, Yue Wang. BMC Genomics 2012
20
25

Allele-specific copy-number discovery from whole-genome and whole-exome sequencing.
WeiBo Wang, Wei Wang, Wei Sun, James J Crowley, Jin P Szatkiewicz. Nucleic Acids Res 2015
10
25

The combinatorics of tandem duplication trees.
Olivier Gascuel, Michael D Hendy, Alain Jean-Marie, Robert McLachlan. Syst Biol 2003
12
25

IntSIM: An Integrated Simulator of Next-Generation Sequencing Data.
Xiguo Yuan, Junying Zhang, Liying Yang. IEEE Trans Biomed Eng 2017
19
25


Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads.
Jan Schröder, Arthur Hsu, Samantha E Boyle, Geoff Macintyre, Marek Cmero, Richard W Tothill, Ricky W Johnstone, Mark Shackleton, Anthony T Papenfuss. Bioinformatics 2014
47
25

Global variation in copy number in the human genome.
Richard Redon, Shumpei Ishikawa, Karen R Fitch, Lars Feuk, George H Perry, T Daniel Andrews, Heike Fiegler, Michael H Shapero, Andrew R Carson, Wenwei Chen,[...]. Nature 2006
25

Sensitive and accurate detection of copy number variants using read depth of coverage.
Seungtai Yoon, Zhenyu Xuan, Vladimir Makarov, Kenny Ye, Jonathan Sebat. Genome Res 2009
342
25

BreakDancer: an algorithm for high-resolution mapping of genomic structural variation.
Ken Chen, John W Wallis, Michael D McLellan, David E Larson, Joelle M Kalicki, Craig S Pohl, Sean D McGrath, Michael C Wendl, Qunyuan Zhang, Devin P Locke,[...]. Nat Methods 2009
863
25

LUMPY: a probabilistic framework for structural variant discovery.
Ryan M Layer, Colby Chiang, Aaron R Quinlan, Ira M Hall. Genome Biol 2014
535
25

SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data.
Bruno Zeitouni, Valentina Boeva, Isabelle Janoueix-Lerosey, Sophie Loeillet, Patricia Legoix-né, Alain Nicolas, Olivier Delattre, Emmanuel Barillot. Bioinformatics 2010
129
25

Role of DNA copy number variation in dyslipidemias.
Michael A Iacocca, Robert A Hegele. Curr Opin Lipidol 2018
23
25

Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data.
Valentina Boeva, Tatiana Popova, Kevin Bleakley, Pierre Chiche, Julie Cappo, Gudrun Schleiermacher, Isabelle Janoueix-Lerosey, Olivier Delattre, Emmanuel Barillot. Bioinformatics 2012
444
25

An integrated map of structural variation in 2,504 human genomes.
Peter H Sudmant, Tobias Rausch, Eugene J Gardner, Robert E Handsaker, Alexej Abyzov, John Huddleston, Yan Zhang, Kai Ye, Goo Jun, Markus Hsi-Yang Fritz,[...]. Nature 2015
936
25

A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
25

CNV-TV: a robust method to discover copy number variation from short sequencing reads.
Junbo Duan, Ji-Gang Zhang, Hong-Wen Deng, Yu-Ping Wang. BMC Bioinformatics 2013
21
25

Paired-end mapping reveals extensive structural variation in the human genome.
Jan O Korbel, Alexander Eckehart Urban, Jason P Affourtit, Brian Godwin, Fabian Grubert, Jan Fredrik Simons, Philip M Kim, Dean Palejev, Nicholas J Carriero, Lei Du,[...]. Science 2007
762
25


Substantial biases in ultra-short read data sets from high-throughput DNA sequencing.
Juliane C Dohm, Claudio Lottaz, Tatiana Borodina, Heinz Himmelbauer. Nucleic Acids Res 2008
690
25

Concurrent Inhibition of Pim and FLT3 Kinases Enhances Apoptosis of FLT3-ITD Acute Myeloid Leukemia Cells through Increased Mcl-1 Proteasomal Degradation.
Shivani Kapoor, Karthika Natarajan, Patrick R Baldwin, Kshama A Doshi, Rena G Lapidus, Trevor J Mathias, Mario Scarpa, Rossana Trotta, Eduardo Davila, Manfred Kraus,[...]. Clin Cancer Res 2018
18
25

TIDDIT, an efficient and comprehensive structural variant caller for massive parallel sequencing data.
Jesper Eisfeldt, Francesco Vezzi, Pall Olason, Daniel Nilsson, Anna Lindstrand. F1000Res 2017
29
25

Structural mutations in cancer: mechanistic and functional insights.
Koichiro Inaki, Edison T Liu. Trends Genet 2012
46
25

Complex landscapes of somatic rearrangement in human breast cancer genomes.
Philip J Stephens, David J McBride, Meng-Lay Lin, Ignacio Varela, Erin D Pleasance, Jared T Simpson, Lucy A Stebbings, Catherine Leroy, Sarah Edkins, Laura J Mudie,[...]. Nature 2009
604
25

DB2: a probabilistic approach for accurate detection of tandem duplication breakpoints using paired-end reads.
Gökhan Yavaş, Mehmet Koyutürk, Meetha P Gould, Sarah McMahon, Thomas LaFramboise. BMC Genomics 2014
5
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.