A citation-based method for searching scientific literature

Mahdi Moradi Marjaneh, Jonathan Beesley, Tracy A O'Mara, Pamela Mukhopadhyay, Lambros T Koufariotis, Stephen Kazakoff, Nehal Hussein, Laura Fachal, Nenad Bartonicek, Kristine M Hillman, Susanne Kaufmann, Haran Sivakumaran, Chanel E Smart, Amy E McCart Reed, Kaltin Ferguson, Jodi M Saunus, Sunil R Lakhani, Daniel R Barnes, Antonis C Antoniou, Marcel E Dinger, Nicola Waddell, Douglas F Easton, Alison M Dunning, Georgia Chenevix-Trench, Stacey L Edwards, Juliet D French. Genome Biol 2020
Times Cited: 10







List of co-cited articles
32 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Long Noncoding RNAs CUPID1 and CUPID2 Mediate Breast Cancer Risk at 11q13 by Modulating the Response to DNA Damage.
Joshua A Betts, Mahdi Moradi Marjaneh, Fares Al-Ejeh, Yi Chieh Lim, Wei Shi, Haran Sivakumaran, Romain Tropée, Ann-Marie Patch, Michael B Clark, Nenad Bartonicek,[...]. Am J Hum Genet 2017
57
70

Fine-mapping of 150 breast cancer risk regions identifies 191 likely target genes.
Laura Fachal, Hugues Aschard, Jonathan Beesley, Daniel R Barnes, Jamie Allen, Siddhartha Kar, Karen A Pooley, Joe Dennis, Kyriaki Michailidou, Constance Turman,[...]. Nat Genet 2020
51
40

Therapeutic Targeting of Long Non-Coding RNAs in Cancer.
Gayatri Arun, Sarah D Diermeier, David L Spector. Trends Mol Med 2018
282
30

Risk SNP-Mediated Promoter-Enhancer Switching Drives Prostate Cancer through lncRNA PCAT19.
Junjie Tony Hua, Musaddeque Ahmed, Haiyang Guo, Yuzhe Zhang, Sujun Chen, Fraser Soares, Jennifer Lu, Stanley Zhou, Miranda Wang, Hui Li,[...]. Cell 2018
152
30

Association analysis identifies 65 new breast cancer risk loci.
Kyriaki Michailidou, Sara Lindström, Joe Dennis, Jonathan Beesley, Shirley Hui, Siddhartha Kar, Audrey Lemaçon, Penny Soucy, Dylan Glubb, Asha Rostamianfar,[...]. Nature 2017
574
30

Chromatin interactome mapping at 139 independent breast cancer risk signals.
Jonathan Beesley, Haran Sivakumaran, Mahdi Moradi Marjaneh, Luize G Lima, Kristine M Hillman, Susanne Kaufmann, Natasha Tuano, Nehal Hussein, Sunyoung Ham, Pamela Mukhopadhyay,[...]. Genome Biol 2020
13
30

Modulation of long noncoding RNAs by risk SNPs underlying genetic predispositions to prostate cancer.
Haiyang Guo, Musaddeque Ahmed, Fan Zhang, Cindy Q Yao, SiDe Li, Yi Liang, Junjie Hua, Fraser Soares, Yifei Sun, Jens Langstein,[...]. Nat Genet 2016
154
30

CCR5AS lncRNA variation differentially regulates CCR5, influencing HIV disease outcome.
Smita Kulkarni, Alexandra Lied, Viraj Kulkarni, Marijana Rucevic, Maureen P Martin, Victoria Walker-Sperling, Stephen K Anderson, Rodger Ewy, Sukhvinder Singh, Hoang Nguyen,[...]. Nat Immunol 2019
46
20

A long noncoding RNA associated with susceptibility to celiac disease.
Ainara Castellanos-Rubio, Nora Fernandez-Jimenez, Radomir Kratchmarov, Xiaobing Luo, Govind Bhagat, Peter H R Green, Robert Schneider, Megerditch Kiledjian, Jose Ramon Bilbao, Sankar Ghosh. Science 2016
149
20

The transcriptional landscape of the mammalian genome.
P Carninci, T Kasukawa, S Katayama, J Gough, M C Frith, N Maeda, R Oyama, T Ravasi, B Lenhard, C Wells,[...]. Science 2005
20

Hallmarks of cancer: the next generation.
Douglas Hanahan, Robert A Weinberg. Cell 2011
20

Cancer expression quantitative trait loci (eQTLs) can be determined from heterogeneous tumor gene expression data by modeling variation in tumor purity.
Paul Geeleher, Aritro Nath, Fan Wang, Zhenyu Zhang, Alvaro N Barbeira, Jessica Fessler, Robert L Grossman, Cathal Seoighe, R Stephanie Huang. Genome Biol 2018
12
20

The novel lncRNA lnc-NR2F1 is pro-neurogenic and mutated in human neurodevelopmental disorders.
Cheen Euong Ang, Qing Ma, Orly L Wapinski, ShengHua Fan, Ryan A Flynn, Qian Yi Lee, Bradley Coe, Masahiro Onoguchi, Victor Hipolito Olmos, Brian T Do,[...]. Elife 2019
34
20

An atlas of human long non-coding RNAs with accurate 5' ends.
Chung-Chau Hon, Jordan A Ramilowski, Jayson Harshbarger, Nicolas Bertin, Owen J L Rackham, Julian Gough, Elena Denisenko, Sebastian Schmeier, Thomas M Poulsen, Jessica Severin,[...]. Nature 2017
521
20

A transcriptome-wide association study of 229,000 women identifies new candidate susceptibility genes for breast cancer.
Lang Wu, Wei Shi, Jirong Long, Xingyi Guo, Kyriaki Michailidou, Jonathan Beesley, Manjeet K Bolla, Xiao-Ou Shu, Yingchang Lu, Qiuyin Cai,[...]. Nat Genet 2018
93
20

Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.
Roger L Milne, Karoline B Kuchenbaecker, Kyriaki Michailidou, Jonathan Beesley, Siddhartha Kar, Sara Lindström, Shirley Hui, Audrey Lemaçon, Penny Soucy, Joe Dennis,[...]. Nat Genet 2017
161
20

Risks of Breast, Ovarian, and Contralateral Breast Cancer for BRCA1 and BRCA2 Mutation Carriers.
Karoline B Kuchenbaecker, John L Hopper, Daniel R Barnes, Kelly-Anne Phillips, Thea M Mooij, Marie-José Roos-Blom, Sarah Jervis, Flora E van Leeuwen, Roger L Milne, Nadine Andrieu,[...]. JAMA 2017
20

Lnc2Cancer v2.0: updated database of experimentally supported long non-coding RNAs in human cancers.
Yue Gao, Peng Wang, Yanxia Wang, Xueyan Ma, Hui Zhi, Dianshuang Zhou, Xin Li, Ying Fang, Weitao Shen, Yingqi Xu,[...]. Nucleic Acids Res 2019
103
20


Genome regulation by long noncoding RNAs.
John L Rinn, Howard Y Chang. Annu Rev Biochem 2012
20

ANRIL, a long, noncoding RNA, is an unexpected major hotspot in GWAS.
Eric Pasmant, Audrey Sabbagh, Michel Vidaud, Ivan Bièche. FASEB J 2011
335
20

Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression.
John R Prensner, Matthew K Iyer, O Alejandro Balbin, Saravana M Dhanasekaran, Qi Cao, J Chad Brenner, Bharathi Laxman, Irfan A Asangani, Catherine S Grasso, Hal D Kominsky,[...]. Nat Biotechnol 2011
762
20

LncRNADisease 2.0: an updated database of long non-coding RNA-associated diseases.
Zhenyu Bao, Zhen Yang, Zhou Huang, Yiran Zhou, Qinghua Cui, Dong Dong. Nucleic Acids Res 2019
215
20

SNPs and Somatic Mutation on Long Non-Coding RNA: New Frontier in the Cancer Studies?
Linda Minotti, Chiara Agnoletto, Federica Baldassari, Fabio Corrà, Stefano Volinia. High Throughput 2018
30
20

Melanoma addiction to the long non-coding RNA SAMMSON.
Eleonora Leucci, Roberto Vendramin, Marco Spinazzi, Patrick Laurette, Mark Fiers, Jasper Wouters, Enrico Radaelli, Sven Eyckerman, Carina Leonelli, Katrien Vanderheyden,[...]. Nature 2016
321
20

The Emerging Role of Long Noncoding RNAs in Human Disease.
Johanna K DiStefano. Methods Mol Biol 2018
106
20

The polymorphism rs944289 predisposes to papillary thyroid carcinoma through a large intergenic noncoding RNA gene of tumor suppressor type.
Jaroslaw Jendrzejewski, Huiling He, Hanna S Radomska, Wei Li, Jerneja Tomsic, Sandya Liyanarachchi, Ramana V Davuluri, Rebecca Nagy, Albert de la Chapelle. Proc Natl Acad Sci U S A 2012
200
20

The landscape of long noncoding RNAs in the human transcriptome.
Matthew K Iyer, Yashar S Niknafs, Rohit Malik, Udit Singhal, Anirban Sahu, Yasuyuki Hosono, Terrence R Barrette, John R Prensner, Joseph R Evans, Shuang Zhao,[...]. Nat Genet 2015
20

Genome-wide analysis of the human p53 transcriptional network unveils a lncRNA tumour suppressor signature.
Yolanda Sánchez, Victor Segura, Oskar Marín-Béjar, Alejandro Athie, Francesco P Marchese, Jovanna González, Luis Bujanda, Shuling Guo, Ander Matheu, Maite Huarte. Nat Commun 2014
139
20

Emerging evidence for functional peptides encoded by short open reading frames.
Shea J Andrews, Joseph A Rothnagel. Nat Rev Genet 2014
318
20

Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis.
Rajnish A Gupta, Nilay Shah, Kevin C Wang, Jeewon Kim, Hugo M Horlings, David J Wong, Miao-Chih Tsai, Tiffany Hung, Pedram Argani, John L Rinn,[...]. Nature 2010
20

Global Cancer Statistics 2020: GLOBOCAN Estimates of Incidence and Mortality Worldwide for 36 Cancers in 185 Countries.
Hyuna Sung, Jacques Ferlay, Rebecca L Siegel, Mathieu Laversanne, Isabelle Soerjomataram, Ahmedin Jemal, Freddie Bray. CA Cancer J Clin 2021
20

Comprehensive In Vivo Interrogation Reveals Phenotypic Impact of Human Enhancer Variants.
Evgeny Z Kvon, Yiwen Zhu, Guy Kelman, Catherine S Novak, Ingrid Plajzer-Frick, Momoe Kato, Tyler H Garvin, Quan Pham, Anne N Harrington, Riana D Hunter,[...]. Cell 2020
33
10

Spatial partitioning of the regulatory landscape of the X-inactivation centre.
Elphège P Nora, Bryan R Lajoie, Edda G Schulz, Luca Giorgetti, Ikuhiro Okamoto, Nicolas Servant, Tristan Piolot, Nynke L van Berkum, Johannes Meisig, John Sedat,[...]. Nature 2012
10

Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements.
Maxwell R Mumbach, Ansuman T Satpathy, Evan A Boyle, Chao Dai, Benjamin G Gowen, Seung Woo Cho, Michelle L Nguyen, Adam J Rubin, Jeffrey M Granja, Katelynn R Kazane,[...]. Nat Genet 2017
218
10

Results from a phase 1 study of nusinersen (ISIS-SMN(Rx)) in children with spinal muscular atrophy.
Claudia A Chiriboga, Kathryn J Swoboda, Basil T Darras, Susan T Iannaccone, Jacqueline Montes, Darryl C De Vivo, Daniel A Norris, C Frank Bennett, Kathie M Bishop. Neurology 2016
353
10

Million Veteran Program: A mega-biobank to study genetic influences on health and disease.
John Michael Gaziano, John Concato, Mary Brophy, Louis Fiore, Saiju Pyarajan, James Breeling, Stacey Whitbourne, Jennifer Deen, Colleen Shannon, Donald Humphries,[...]. J Clin Epidemiol 2016
347
10

Functional variants at the 11q13 risk locus for breast cancer regulate cyclin D1 expression through long-range enhancers.
Juliet D French, Maya Ghoussaini, Stacey L Edwards, Kerstin B Meyer, Kyriaki Michailidou, Shahana Ahmed, Sofia Khan, Mel J Maranian, Martin O'Reilly, Kristine M Hillman,[...]. Am J Hum Genet 2013
157
10

Roles of the immune system in cancer: from tumor initiation to metastatic progression.
Hugo Gonzalez, Catharina Hagerling, Zena Werb. Genes Dev 2018
603
10


Allele-specific NKX2-5 binding underlies multiple genetic associations with human electrocardiographic traits.
Paola Benaglio, Agnieszka D'Antonio-Chronowska, Wubin Ma, Feng Yang, William W Young Greenwald, Margaret K R Donovan, Christopher DeBoever, He Li, Frauke Drees, Sanghamitra Singhal,[...]. Nat Genet 2019
14
10

Mutation in noncoding RNA RNU12 causes early onset cerebellar ataxia.
Mahmoud Fawzi Elsaid, Nader Chalhoub, Tawfeg Ben-Omran, Pankaj Kumar, Hussein Kamel, Khalid Ibrahim, Yasmin Mohamoud, Eman Al-Dous, Iman Al-Azwani, Joel A Malek,[...]. Ann Neurol 2017
40
10

Point Mutations in Exon 1B of APC Reveal Gastric Adenocarcinoma and Proximal Polyposis of the Stomach as a Familial Adenomatous Polyposis Variant.
Jun Li, Susan L Woods, Sue Healey, Jonathan Beesley, Xiaoqing Chen, Jason S Lee, Haran Sivakumaran, Nicci Wayte, Katia Nones, Joshua J Waterfall,[...]. Am J Hum Genet 2016
104
10

Distributions of exons and introns in the human genome.
Meena Kishore Sakharkar, Vincent T K Chow, Pandjassarame Kangueane. In Silico Biol 2004
159
10

FTO Obesity Variant Circuitry and Adipocyte Browning in Humans.
Melina Claussnitzer, Simon N Dankel, Kyoung-Han Kim, Gerald Quon, Wouter Meuleman, Christine Haugen, Viktoria Glunk, Isabel S Sousa, Jacqueline L Beaudry, Vijitha Puviindran,[...]. N Engl J Med 2015
712
10

Integrative Analysis Identifies Genetic Variants Associated With Autoimmune Diseases Affecting Putative MicroRNA Binding Sites.
Rodrigo C de Almeida, Vinícius S Chagas, Mauro A A Castro, Maria L Petzl-Erler. Front Genet 2018
11
10

A Common Type 2 Diabetes Risk Variant Potentiates Activity of an Evolutionarily Conserved Islet Stretch Enhancer and Increases C2CD4A and C2CD4B Expression.
Ina Kycia, Brooke N Wolford, Jeroen R Huyghe, Christian Fuchsberger, Swarooparani Vadlamudi, Romy Kursawe, Ryan P Welch, Ricardo d'Oliveira Albanus, Asli Uyar, Shubham Khetan,[...]. Am J Hum Genet 2018
26
10

The support of human genetic evidence for approved drug indications.
Matthew R Nelson, Hannah Tipney, Jeffery L Painter, Judong Shen, Paola Nicoletti, Yufeng Shen, Aris Floratos, Pak Chung Sham, Mulin Jun Li, Junwen Wang,[...]. Nat Genet 2015
601
10

Cellular functions of long noncoding RNAs.
Run-Wen Yao, Yang Wang, Ling-Ling Chen. Nat Cell Biol 2019
596
10

A novel mechanism for variable phenotypic expressivity in Mendelian diseases uncovered by an AU-rich element (ARE)-creating mutation.
Nisha Patel, Arif O Khan, Maher Al-Saif, Walid N Moghrabi, Balsam M AlMaarik, Niema Ibrahim, Firdous Abdulwahab, Mais Hashem, Tarfa Alshidi, Eman Alobeid,[...]. Genome Biol 2017
15
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.