A citation-based method for searching scientific literature

Fan Zhang, Lihong Lou, Bo Peng, Xiaotian Song, Ofer Reizes, Alexandru Almasan, Zihua Gong. Cancer Res 2020
Times Cited: 9







List of co-cited articles
31 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A comprehensive structural, biochemical and biological profiling of the human NUDIX hydrolase family.
Jordi Carreras-Puigvert, Marinka Zitnik, Ann-Sofie Jemth, Megan Carter, Judith E Unterlass, Björn Hallström, Olga Loseva, Zhir Karem, José Manuel Calderón-Montaño, Cecilia Lindskog,[...]. Nat Commun 2017
50
44

Structural analyses of NudT16-ADP-ribose complexes direct rational design of mutants with improved processing of poly(ADP-ribosyl)ated proteins.
Puchong Thirawatananond, Robert Lyle McPherson, Jasmine Malhi, Sara Nathan, Michael J Lambrecht, Matthew Brichacek, Paul J Hergenrother, Anthony K L Leung, Sandra B Gabelli. Sci Rep 2019
9
33

Double-strand break repair: 53BP1 comes into focus.
Stephanie Panier, Simon J Boulton. Nat Rev Mol Cell Biol 2014
582
33

Reversible ADP-ribosylation of RNA.
Deeksha Munnur, Edward Bartlett, Petra Mikolčević, Ilsa T Kirby, Johannes Gregor Matthias Rack, Andreja Mikoč, Michael S Cohen, Ivan Ahel. Nucleic Acids Res 2019
60
33

Processing of protein ADP-ribosylation by Nudix hydrolases.
Luca Palazzo, Benjamin Thomas, Ann-Sofie Jemth, Thomas Colby, Orsolya Leidecker, Karla L H Feijs, Roko Zaja, Olga Loseva, Jordi Carreras Puigvert, Ivan Matic,[...]. Biochem J 2015
80
33


Structural and mechanistic basis of mammalian Nudt12 RNA deNADding.
Ewa Grudzien-Nogalska, Yixuan Wu, Xinfu Jiao, Huijuan Cui, Maria K Mateyak, Ronald P Hart, Liang Tong, Megerditch Kiledjian. Nat Chem Biol 2019
13
22


Solution structure of the MutT enzyme, a nucleoside triphosphate pyrophosphohydrolase.
C Abeygunawardana, D J Weber, A G Gittis, D N Frick, J Lin, A F Miller, M J Bessman, A S Mildvan. Biochemistry 1995
83
22


Hydrolytic activity of human Nudt16 enzyme on dinucleotide cap analogs and short capped oligonucleotides.
Renata Grzela, Karolina Nasilowska, Maciej Lukaszewicz, Michal Tyras, Janusz Stepinski, Marzena Jankowska-Anyszka, Elzbieta Bojarska, Edward Darzynkiewicz. RNA 2018
7
28

Structures and mechanisms of Nudix hydrolases.
A S Mildvan, Z Xia, H F Azurmendi, V Saraswat, P M Legler, M A Massiah, S B Gabelli, M A Bianchet, L-W Kang, L M Amzel. Arch Biochem Biophys 2005
226
22

Structural Basis for the Specificity of Human NUDT16 and Its Regulation by Inosine Monophosphate.
Lionel Trésaugues, Thomas Lundbäck, Martin Welin, Susanne Flodin, Tomas Nyman, Camilla Silvander, Susanne Gräslund, Pär Nordlund. PLoS One 2015
15
22

5' End Nicotinamide Adenine Dinucleotide Cap in Human Cells Promotes RNA Decay through DXO-Mediated deNADding.
Xinfu Jiao, Selom K Doamekpor, Jeremy G Bird, Bryce E Nickels, Liang Tong, Ronald P Hart, Megerditch Kiledjian. Cell 2017
92
22


Multiple mRNA decapping enzymes in mammalian cells.
Man-Gen Song, You Li, Megerditch Kiledjian. Mol Cell 2010
105
22

Playing the end game: DNA double-strand break repair pathway choice.
J Ross Chapman, Martin R G Taylor, Simon J Boulton. Mol Cell 2012
958
22


Structural basis for the methylation state-specific recognition of histone H4-K20 by 53BP1 and Crb2 in DNA repair.
Maria Victoria Botuyan, Joseph Lee, Irene M Ward, Ja-Eun Kim, James R Thompson, Junjie Chen, Georges Mer. Cell 2006
687
22


hNUDT16: a universal decapping enzyme for small nucleolar RNA and cytoplasmic mRNA.
Guangwen Lu, Jie Zhang, Yan Li, Zhixin Li, Na Zhang, Xiang Xu, Tingting Wang, Zhenhong Guan, George F Gao, Jinghua Yan. Protein Cell 2011
26
22

Expression of Oncogenic Drivers in 3D Cell Culture Depends on Nuclear ATP Synthesis by NUDT5.
Katherine E Pickup, Felicitas Pardow, José Carbonell-Caballero, Antonios Lioutas, José Luis Villanueva-Cañas, Roni H G Wright, Miguel Beato. Cancers (Basel) 2019
11
22

Targeted NUDT5 inhibitors block hormone signaling in breast cancer cells.
Brent D G Page, Nicholas C K Valerie, Roni H G Wright, Olov Wallner, Rebecka Isaksson, Megan Carter, Sean G Rudd, Olga Loseva, Ann-Sofie Jemth, Ingrid Almlöf,[...]. Nat Commun 2018
23
22

The Nudix hydrolase superfamily.
A G McLennan. Cell Mol Life Sci 2006
402
22

ADP-ribose-derived nuclear ATP synthesis by NUDIX5 is required for chromatin remodeling.
Roni H G Wright, Antonios Lioutas, Francois Le Dily, Daniel Soronellas, Andy Pohl, Jaume Bonet, A S Nacht, Sara Samino, Jofre Font-Mateu, Guillermo P Vicent,[...]. Science 2016
83
22

Mammalian Nudix proteins cleave nucleotide metabolite caps on RNAs.
Sunny Sharma, Ewa Grudzien-Nogalska, Keith Hamilton, Xinfu Jiao, Jun Yang, Liang Tong, Megerditch Kiledjian. Nucleic Acids Res 2020
11
22

Poly(ADP-ribosyl)ation of polynucleosomes causes relaxation of chromatin structure.
G G Poirier, G de Murcia, J Jongstra-Bilen, C Niedergang, P Mandel. Proc Natl Acad Sci U S A 1982
413
22

NUDT16 is a (deoxy)inosine diphosphatase, and its deficiency induces accumulation of single-strand breaks in nuclear DNA and growth arrest.
Teruaki Iyama, Nona Abolhassani, Daisuke Tsuchimoto, Mari Nonaka, Yusaku Nakabeppu. Nucleic Acids Res 2010
37
22

Role of NUDIX Hydrolases in NAD and ADP-Ribose Metabolism in Mammals.
V A Kulikova, A A Nikiforov. Biochemistry (Mosc) 2020
4
50

CDK2-dependent activation of PARP-1 is required for hormonal gene regulation in breast cancer cells.
Roni H G Wright, Giancarlo Castellano, Jaume Bonet, Francois Le Dily, Jofre Font-Mateu, Cecilia Ballaré, A Silvina Nacht, Daniel Soronellas, Baldo Oliva, Miguel Beato. Genes Dev 2012
81
22

NAD+-dependent modulation of chromatin structure and transcription by nucleosome binding properties of PARP-1.
Mi Young Kim, Steven Mauro, Nicolas Gévry, John T Lis, W Lee Kraus. Cell 2004
410
22

Nudt3 is an mRNA decapping enzyme that modulates cell migration.
Ewa Grudzien-Nogalska, Xinfu Jiao, Man-Gen Song, Ronald P Hart, Megerditch Kiledjian. RNA 2016
26
11




4
25

A conserved NAD+ binding pocket that regulates protein-protein interactions during aging.
Jun Li, Michael S Bonkowski, Sébastien Moniot, Dapeng Zhang, Basil P Hubbard, Alvin J Y Ling, Luis A Rajman, Bo Qin, Zhenkun Lou, Vera Gorbunova,[...]. Science 2017
85
11

The mechanism of RNA 5′ capping with NAD+, NADH and desphospho-CoA.
Jeremy G Bird, Yu Zhang, Yuan Tian, Natalya Panova, Ivan Barvík, Landon Greene, Min Liu, Brian Buckley, Libor Krásný, Jeehiun K Lee,[...]. Nature 2016
93
11

NAD in RNA: unconventional headgear.
Daniel J Luciano, Joel G Belasco. Trends Biochem Sci 2015
13
11

Identification of an evolutionarily conserved family of inorganic polyphosphate endopolyphosphatases.
Annalisa Lonetti, Zsolt Szijgyarto, Daniel Bosch, Omar Loss, Cristina Azevedo, Adolfo Saiardi. J Biol Chem 2011
128
11

The evolution of function within the Nudix homology clan.
John R Srouji, Anting Xu, Annsea Park, Jack F Kirsch, Steven E Brenner. Proteins 2017
29
11

Bacterial RNA polymerase caps RNA with various cofactors and cell wall precursors.
Christina Julius, Yulia Yuzenkova. Nucleic Acids Res 2017
32
11

Emerging roles of RNA modifications in bacteria.
Carmelita Nora Marbaniang, Jörg Vogel. Curr Opin Microbiol 2016
40
11


A novel context for the 'MutT' module, a guardian of cell integrity, in a diphosphoinositol polyphosphate phosphohydrolase.
S T Safrany, J J Caffrey, X Yang, M E Bembenek, M B Moyer, W A Burkhart, S B Shears. EMBO J 1998
128
11

Structural basis of dcp2 recognition and activation by dcp1.
Meipei She, Carolyn J Decker, Dmitri I Svergun, Adam Round, Nan Chen, Denise Muhlrad, Roy Parker, Haiwei Song. Mol Cell 2008
97
11

Identification and analysis of hepatitis C virus NS3 helicase inhibitors using nucleic acid binding assays.
Sourav Mukherjee, Alicia M Hanson, William R Shadrick, Jean Ndjomou, Noreena L Sweeney, John J Hernandez, Diana Bartczak, Kelin Li, Kevin J Frankowski, Julie A Heck,[...]. Nucleic Acids Res 2012
46
11

Structural similarities between MutT and the C-terminal domain of MutY.
D E Volk, P G House, V Thiviyanathan, B A Luxon, S Zhang, R S Lloyd, D G Gorenstein. Biochemistry 2000
52
11

NAD captureSeq indicates NAD as a bacterial cap for a subset of regulatory RNAs.
Hana Cahová, Marie-Luise Winz, Katharina Höfer, Gabriele Nübel, Andres Jäschke. Nature 2015
134
11

Eukaryotic RNA 5'-End NAD+ Capping and DeNADding.
Megerditch Kiledjian. Trends Cell Biol 2018
39
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.