A citation-based method for searching scientific literature

Carlos Perez-Cervantes, Linsin A Smith, Rangarajan D Nadadur, Andrew E O Hughes, Sui Wang, Joseph C Corbo, Constance Cepko, Nicolas Lonfat, Ivan P Moskowitz. Development 2020
Times Cited: 6







List of co-cited articles
48 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Otx2 and Onecut1 promote the fates of cone photoreceptors and horizontal cells and repress rod photoreceptors.
Mark M Emerson, Natalia Surzenko, Jillian J Goetz, Jeffrey Trimarchi, Constance L Cepko. Dev Cell 2013
64
66

Otx2 homeobox gene controls retinal photoreceptor cell fate and pineal gland development.
Akihiro Nishida, Akiko Furukawa, Chieko Koike, Yasuo Tano, Shinichi Aizawa, Isao Matsuo, Takahisa Furukawa. Nat Neurosci 2003
398
66

Onecut1 and Onecut2 redundantly regulate early retinal cell fates during development.
Darshan Sapkota, Hemabindu Chintala, Fuguo Wu, Steven J Fliesler, Zihua Hu, Xiuqian Mu. Proc Natl Acad Sci U S A 2014
51
50

Analysis of thyroid response element activity during retinal development.
Nathan A Billings, Mark M Emerson, Constance L Cepko. PLoS One 2010
21
50


Electroporation and RNA interference in the rodent retina in vivo and in vitro.
Takahiko Matsuda, Constance L Cepko. Proc Natl Acad Sci U S A 2004
712
50

Transcription factor Olig2 defines subpopulations of retinal progenitor cells biased toward specific cell fates.
Brian P Hafler, Natalia Surzenko, Kevin T Beier, Claudio Punzo, Jeffrey M Trimarchi, Jennifer H Kong, Constance L Cepko. Proc Natl Acad Sci U S A 2012
77
50


The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
50


Functional roles of Otx2 transcription factor in postnatal mouse retinal development.
Chieko Koike, Akihiro Nishida, Shinji Ueno, Hiromitsu Saito, Rikako Sanuki, Shigeru Sato, Akiko Furukawa, Shinichi Aizawa, Isao Matsuo, Noboru Suzuki,[...]. Mol Cell Biol 2007
125
50

Dkk3-Cre BAC transgenic mouse line: a tool for highly efficient gene deletion in retinal progenitor cells.
Shigeru Sato, Tatsuya Inoue, Koji Terada, Isao Matsuo, Shinichi Aizawa, Yasuo Tano, Takashi Fujikado, Takahisa Furukawa. Genesis 2007
65
50

Neurog2 controls the leading edge of neurogenesis in the mammalian retina.
Robert B Hufnagel, Tien T Le, Ashley L Riesenberg, Nadean L Brown. Dev Biol 2010
67
33

Onecut1 is essential for horizontal cell genesis and retinal integrity.
Fuguo Wu, Renzhong Li, Yumiko Umino, Tadeusz J Kaczynski, Darshan Sapkota, Shengguo Li, Mengqing Xiang, Steven J Fliesler, David M Sherry, Maureen Gannon,[...]. J Neurosci 2013
42
33

Identification and characterization of early photoreceptor cis-regulatory elements and their relation to Onecut1.
Nathalie Jean-Charles, Diego F Buenaventura, Mark M Emerson. Neural Dev 2018
8
33

Lineage tracing analysis of cone photoreceptor associated cis-regulatory elements in the developing chicken retina.
Estie Schick, Sean D McCaffery, Erin E Keblish, Cassandra Thakurdin, Mark M Emerson. Sci Rep 2019
8
33

Thyroid hormone components are expressed in three sequential waves during development of the chick retina.
Jeffrey M Trimarchi, Sanjiv Harpavat, Nathan A Billings, Constance L Cepko. BMC Dev Biol 2008
47
33

Requirement of multiple basic helix-loop-helix genes for retinal neuronal subtype specification.
Tadamichi Akagi, Tomoyuki Inoue, Goichi Miyoshi, Yasumasa Bessho, Masayo Takahashi, Jacqueline E Lee, François Guillemot, Ryoichiro Kageyama. J Biol Chem 2004
105
33

The human genome browser at UCSC.
W James Kent, Charles W Sugnet, Terrence S Furey, Krishna M Roskin, Tom H Pringle, Alan M Zahler, David Haussler. Genome Res 2002
33

Integral bHLH factor regulation of cell cycle exit and RGC differentiation.
Kate A Maurer, Angelica Kowalchuk, Farnaz Shoja-Taheri, Nadean L Brown. Dev Dyn 2018
5
40




Cone photoreceptor types in zebrafish are generated by symmetric terminal divisions of dedicated precursors.
Sachihiro C Suzuki, Adam Bleckert, Philip R Williams, Masaki Takechi, Shoji Kawamura, Rachel O L Wong. Proc Natl Acad Sci U S A 2013
108
33

NeuroD1 regulates expression of thyroid hormone receptor 2 and cone opsins in the developing mouse retina.
Hong Liu, Paige Etter, Susan Hayes, Iwan Jones, Branden Nelson, Byron Hartman, Douglas Forrest, Thomas A Reh. J Neurosci 2008
48
33


Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position.
Jason D Buenrostro, Paul G Giresi, Lisa C Zaba, Howard Y Chang, William J Greenleaf. Nat Methods 2013
33

Retinal cell fate determination and bHLH factors.
Jun Hatakeyama, Ryoichiro Kageyama. Semin Cell Dev Biol 2004
191
33

The subcellular localization of Otx2 is cell-type specific and developmentally regulated in the mouse retina.
D Baas, K M Bumsted, J A Martinez, F M Vaccarino, K C Wikler, C J Barnstable. Brain Res Mol Brain Res 2000
85
33

FIMO: scanning for occurrences of a given motif.
Charles E Grant, Timothy L Bailey, William Stafford Noble. Bioinformatics 2011
33

Otx2 ChIP-seq reveals unique and redundant functions in the mature mouse retina.
Alexander Samuel, Michael Housset, Bruno Fant, Thomas Lamonerie. PLoS One 2014
32
33

Otx2 expression in anterior neuroectoderm and forebrain/midbrain is directed by more than six enhancers.
Daisuke Kurokawa, Tomomi Ohmura, Yusuke Sakurai, Kenichi Inoue, Yoko Suda, Shinichi Aizawa. Dev Biol 2014
14
33

Regulation of Otx2 expression and its functions in mouse forebrain and midbrain.
Daisuke Kurokawa, Hiroshi Kiyonari, Rika Nakayama, Chiharu Kimura-Yoshida, Isao Matsuo, Shinichi Aizawa. Development 2004
76
33

Graded Otx2 activities demonstrate dose-sensitive eye and retina phenotypes.
Clémence Bernard, Hyoung-Tai Kim, Raoul Torero Ibad, Eun Jung Lee, Manuel Simonutti, Serge Picaud, Dario Acampora, Antonio Simeone, Ariel A Di Nardo, Alain Prochiantz,[...]. Hum Mol Genet 2014
23
33

deepTools2: a next generation web server for deep-sequencing data analysis.
Fidel Ramírez, Devon P Ryan, Björn Grüning, Vivek Bhardwaj, Fabian Kilpert, Andreas S Richter, Steffen Heyne, Friederike Dündar, Thomas Manke. Nucleic Acids Res 2016
33

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics.
Karthik Shekhar, Sylvain W Lapan, Irene E Whitney, Nicholas M Tran, Evan Z Macosko, Monika Kowalczyk, Xian Adiconis, Joshua Z Levin, James Nemesh, Melissa Goldman,[...]. Cell 2016
448
33

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
33

DNase I hypersensitivity analysis of the mouse brain and retina identifies region-specific regulatory elements.
Matthew S Wilken, Joseph A Brzezinski, Anna La Torre, Kyle Siebenthall, Robert Thurman, Peter Sabo, Richard S Sandstrom, Jeff Vierstra, Theresa K Canfield, R Scott Hansen,[...]. Epigenetics Chromatin 2015
38
33

OTX2 Activity at Distal Regulatory Elements Shapes the Chromatin Landscape of Group 3 Medulloblastoma.
Gaylor Boulay, Mary E Awad, Nicolo Riggi, Tenley C Archer, Sowmya Iyer, Wannaporn E Boonseng, Nikki E Rossetti, Beverly Naigles, Shruthi Rengarajan, Angela Volorio,[...]. Cancer Discov 2017
26
33

CRX ChIP-seq reveals the cis-regulatory architecture of mouse photoreceptors.
Joseph C Corbo, Karen A Lawrence, Marcus Karlstetter, Connie A Myers, Musa Abdelaziz, William Dirkes, Karin Weigelt, Martin Seifert, Vladimir Benes, Lars G Fritsche,[...]. Genome Res 2010
124
33

An essential role for RAX homeoprotein and NOTCH-HES signaling in Otx2 expression in embryonic retinal photoreceptor cell fate determination.
Yuki Muranishi, Koji Terada, Tatsuya Inoue, Kimiko Katoh, Toshinori Tsujii, Rikako Sanuki, Daisuke Kurokawa, Shinichi Aizawa, Yasuhiro Tamaki, Takahisa Furukawa. J Neurosci 2011
77
33

A new GFP-tagged line reveals unexpected Otx2 protein localization in retinal photoreceptors.
Nicolas Fossat, Coralie Le Greneur, Francis Béby, Stéphane Vincent, Pierre Godement, Gilles Chatelain, Thomas Lamonerie. BMC Dev Biol 2007
43
33

The homeobox gene Otx2 in development and disease.
Francis Beby, Thomas Lamonerie. Exp Eye Res 2013
72
33

Mapping the cis-regulatory architecture of the human retina reveals noncoding genetic variation in disease.
Timothy J Cherry, Marty G Yang, David A Harmin, Peter Tao, Andrew E Timms, Miriam Bauwens, Rando Allikmets, Evan M Jones, Rui Chen, Elfride De Baere,[...]. Proc Natl Acad Sci U S A 2020
9
33

OTX2 represses sister cell fate choices in the developing retina to promote photoreceptor specification.
Miruna Georgiana Ghinia Tegla, Diego F Buenaventura, Diana Y Kim, Cassandra Thakurdin, Kevin C Gonzalez, Mark M Emerson. Elife 2020
9
33

Retinoid X receptor (gamma) is necessary to establish the S-opsin gradient in cone photoreceptors of the developing mouse retina.
Melanie R Roberts, Anita Hendrickson, Christopher R McGuire, Thomas A Reh. Invest Ophthalmol Vis Sci 2005
147
33

Cell type- and stage-specific expression of Otx2 is regulated by multiple transcription factors and cis-regulatory modules in the retina.
Candace S Y Chan, Nicolas Lonfat, Rong Zhao, Alexander E Davis, Liang Li, Man-Ru Wu, Cheng-Hui Lin, Zhe Ji, Constance L Cepko, Sui Wang. Development 2020
5
40

Onecut 1 and Onecut 2 are potential regulators of mouse retinal development.
Fuguo Wu, Darshan Sapkota, Renzhong Li, Xiuqian Mu. J Comp Neurol 2012
44
33


ECR Browser: a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes.
Ivan Ovcharenko, Marcelo A Nobrega, Gabriela G Loots, Lisa Stubbs. Nucleic Acids Res 2004
366
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.