A citation-based method for searching scientific literature

Federico Ariel, Leandro Lucero, Aurelie Christ, Maria Florencia Mammarella, Teddy Jegu, Alaguraj Veluchamy, Kiruthiga Mariappan, David Latrasse, Thomas Blein, Chang Liu, Moussa Benhamed, Martin Crespi. Mol Cell 2020
Times Cited: 85







List of co-cited articles
1264 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Noncoding transcription by alternative RNA polymerases dynamically regulates an auxin-driven chromatin loop.
Federico Ariel, Teddy Jegu, David Latrasse, Natali Romero-Barrios, Aurélie Christ, Moussa Benhamed, Martin Crespi. Mol Cell 2014
209
44



R-loop stabilization represses antisense transcription at the Arabidopsis FLC locus.
Qianwen Sun, Tibor Csorba, Konstantina Skourti-Stathaki, Nicholas J Proudfoot, Caroline Dean. Science 2013
237
29

Target mimicry provides a new mechanism for regulation of microRNA activity.
José Manuel Franco-Zorrilla, Adrián Valli, Marco Todesco, Isabel Mateos, María Isabel Puga, Ignacio Rubio-Somoza, Antonio Leyva, Detlef Weigel, Juan Antonio García, Javier Paz-Ares. Nat Genet 2007
23

The R-loop is a common chromatin feature of the Arabidopsis genome.
Wei Xu, Hui Xu, Kuan Li, Yingxu Fan, Yang Liu, Xuerui Yang, Qianwen Sun. Nat Plants 2017
96
21

A circRNA from SEPALLATA3 regulates splicing of its cognate mRNA through R-loop formation.
Vanessa M Conn, Véronique Hugouvieux, Aditya Nayak, Stephanie A Conos, Giovanna Capovilla, Gökhan Cildir, Agnès Jourdain, Vinay Tergaonkar, Markus Schmid, Chloe Zubieta,[...]. Nat Plants 2017
272
21

Global identification of Arabidopsis lncRNAs reveals the regulation of MAF4 by a natural antisense RNA.
Xinyue Zhao, Jingrui Li, Bi Lian, Hanqing Gu, Yan Li, Yijun Qi. Nat Commun 2018
121
21

Arabidopsis noncoding RNA mediates control of photomorphogenesis by red light.
Yuqiu Wang, Xiuduo Fan, Fang Lin, Guangming He, William Terzaghi, Danmeng Zhu, Xing Wang Deng. Proc Natl Acad Sci U S A 2014
157
20

Transcriptional read-through of the long non-coding RNA SVALKA governs plant cold acclimation.
Peter Kindgren, Ryan Ard, Maxim Ivanov, Sebastian Marquardt. Nat Commun 2018
79
21

Antisense COOLAIR mediates the coordinated switching of chromatin states at FLC during vernalization.
Tibor Csorba, Julia I Questa, Qianwen Sun, Caroline Dean. Proc Natl Acad Sci U S A 2014
232
20

Long noncoding RNA modulates alternative splicing regulators in Arabidopsis.
Florian Bardou, Federico Ariel, Craig G Simpson, Natali Romero-Barrios, Philippe Laporte, Sandrine Balzergue, John W S Brown, Martin Crespi. Dev Cell 2014
191
20

R-Loops as Cellular Regulators and Genomic Threats.
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
287
20

Regulatory R-loops as facilitators of gene expression and genome stability.
Christof Niehrs, Brian Luke. Nat Rev Mol Cell Biol 2020
139
20

R Loops: From Physiological to Pathological Roles.
Tatiana García-Muse, Andrés Aguilera. Cell 2019
209
18

Overexpressing lncRNA LAIR increases grain yield and regulates neighbouring gene cluster expression in rice.
Ying Wang, Xiaojin Luo, Fan Sun, Jianhua Hu, Xiaojun Zha, Wei Su, Jinshui Yang. Nat Commun 2018
77
20

Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target.
Szymon Swiezewski, Fuquan Liu, Andreas Magusin, Caroline Dean. Nature 2009
540
17

ELF18-INDUCED LONG-NONCODING RNA Associates with Mediator to Enhance Expression of Innate Immune Response Genes in Arabidopsis.
Jun Sung Seo, Hai-Xi Sun, Bong Soo Park, Chung-Hao Huang, Shyi-Dong Yeh, Choonkyun Jung, Nam-Hai Chua. Plant Cell 2017
115
17

R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters.
Paul A Ginno, Paul L Lott, Holly C Christensen, Ian Korf, Frédéric Chédin. Mol Cell 2012
491
17

A Nucleus-Localized Long Non-Coding RNA Enhances Drought and Salt Stress Tolerance.
Tao Qin, Huayan Zhao, Peng Cui, Nour Albesher, Liming Xiong. Plant Physiol 2017
115
16

Prevalent, Dynamic, and Conserved R-Loop Structures Associate with Specific Epigenomic Signatures in Mammals.
Lionel A Sanz, Stella R Hartono, Yoong Wearn Lim, Sandra Steyaert, Aparna Rajpurkar, Paul A Ginno, Xiaoqin Xu, Frédéric Chédin. Mol Cell 2016
279
15

R-Loops Promote Antisense Transcription across the Mammalian Genome.
Sue Mei Tan-Wong, Somdutta Dhir, Nick J Proudfoot. Mol Cell 2019
68
19

The R-Loop Atlas of Arabidopsis Development and Responses to Environmental Stimuli.
Wei Xu, Kuan Li, Shuai Li, Quancan Hou, Yushun Zhang, Kunpeng Liu, Qianwen Sun. Plant Cell 2020
32
37


R-ChIP Using Inactive RNase H Reveals Dynamic Coupling of R-loops with Transcriptional Pausing at Gene Promoters.
Liang Chen, Jia-Yu Chen, Xuan Zhang, Ying Gu, Rui Xiao, Changwei Shao, Peng Tang, Hao Qian, Daji Luo, Hairi Li,[...]. Mol Cell 2017
164
14

A noncoding RNA transcribed from the AGAMOUS (AG) second intron binds to CURLY LEAF and represses AG expression in leaves.
Hui-Wen Wu, Shulin Deng, Haiying Xu, Hui-Zhu Mao, Jun Liu, Qi-Wen Niu, Huan Wang, Nam-Hai Chua. New Phytol 2018
36
30

LHP1 Regulates H3K27me3 Spreading and Shapes the Three-Dimensional Conformation of the Arabidopsis Genome.
Alaguraj Veluchamy, Teddy Jégu, Federico Ariel, David Latrasse, Kiruthiga Gayathri Mariappan, Soon-Kap Kim, Martin Crespi, Heribert Hirt, Catherine Bergounioux, Cécile Raynaud,[...]. PLoS One 2016
71
15

The Arabidopsis lncRNA ASCO modulates the transcriptome through interaction with splicing factors.
Richard Rigo, Jérémie Bazin, Natali Romero-Barrios, Michaël Moison, Leandro Lucero, Aurélie Christ, Moussa Benhamed, Thomas Blein, Stéphanie Huguet, Céline Charon,[...]. EMBO Rep 2020
28
39

Genome-wide analysis of chromatin packing in Arabidopsis thaliana at single-gene resolution.
Chang Liu, Congmao Wang, George Wang, Claude Becker, Maricris Zaidem, Detlef Weigel. Genome Res 2016
128
11

Human senataxin resolves RNA/DNA hybrids formed at transcriptional pause sites to promote Xrn2-dependent termination.
Konstantina Skourti-Stathaki, Nicholas J Proudfoot, Natalia Gromak. Mol Cell 2011
480
11

PRC2 recruitment and H3K27me3 deposition at FLC require FCA binding of COOLAIR.
Yongke Tian, Han Zheng, Fei Zhang, Shiliang Wang, Xiaoru Ji, Chao Xu, Yuehui He, Yong Ding. Sci Adv 2019
52
19

The lncRNA APOLO interacts with the transcription factor WRKY42 to trigger root hair cell expansion in response to cold.
Michaël Moison, Javier Martínez Pacheco, Leandro Lucero, Camille Fonouni-Farde, Johan Rodríguez-Melo, Natanael Mansilla, Aurélie Christ, Jérémie Bazin, Moussa Benhamed, Fernando Ibañez,[...]. Mol Plant 2021
17
58

Modular function of long noncoding RNA, COLDAIR, in the vernalization response.
Dong-Hwan Kim, Yanpeng Xi, Sibum Sung. PLoS Genet 2017
64
14

Characterization of functional relationships of R-loops with gene transcription and epigenetic modifications in rice.
Yuan Fang, Lifen Chen, Kande Lin, Yilong Feng, Pengyue Zhang, Xiucai Pan, Jennifer Sanders, Yufeng Wu, Xiu-E Wang, Zhen Su,[...]. Genome Res 2019
21
42

Control of seed dormancy in Arabidopsis by a cis-acting noncoding antisense transcript.
Halina Fedak, Malgorzata Palusinska, Katarzyna Krzyczmonik, Lien Brzezniak, Ruslan Yatusevich, Zbigniew Pietras, Szymon Kaczanowski, Szymon Swiezewski. Proc Natl Acad Sci U S A 2016
64
14

Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters.
Tiffany Hung, Yulei Wang, Michael F Lin, Ashley K Koegel, Yojiro Kotake, Gavin D Grant, Hugo M Horlings, Nilay Shah, Christopher Umbricht, Pei Wang,[...]. Nat Genet 2011
861
10


Regulated Formation of lncRNA-DNA Hybrids Enables Faster Transcriptional Induction and Environmental Adaptation.
Sara C Cloutier, Siwen Wang, Wai Kit Ma, Nadra Al Husini, Zuzer Dhoondia, Athar Ansari, Pete E Pascuzzi, Elizabeth J Tran. Mol Cell 2016
67
11

Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions.
Ci Chu, Kun Qu, Franklin L Zhong, Steven E Artandi, Howard Y Chang. Mol Cell 2011
864
9

Functional consequences of splicing of the antisense transcript COOLAIR on FLC transcription.
Sebastian Marquardt, Oleg Raitskin, Zhe Wu, Fuquan Liu, Qianwen Sun, Caroline Dean. Mol Cell 2014
165
9

Targeted 3' processing of antisense transcripts triggers Arabidopsis FLC chromatin silencing.
Fuquan Liu, Sebastian Marquardt, Clare Lister, Szymon Swiezewski, Caroline Dean. Science 2010
291
9

RNA-directed DNA methylation: an epigenetic pathway of increasing complexity.
Marjori A Matzke, Rebecca A Mosher. Nat Rev Genet 2014
811
9

LncRNA Khps1 Regulates Expression of the Proto-oncogene SPHK1 via Triplex-Mediated Changes in Chromatin Structure.
Anna Postepska-Igielska, Alena Giwojna, Lital Gasri-Plotnitsky, Nina Schmitt, Annabelle Dold, Doron Ginsberg, Ingrid Grummt. Mol Cell 2015
169
9

R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells.
Kefei Yu, Frederic Chedin, Chih-Lin Hsieh, Thomas E Wilson, Michael R Lieber. Nat Immunol 2003
532
9

BRCA2 prevents R-loop accumulation and associates with TREX-2 mRNA export factor PCID2.
Vaibhav Bhatia, Sonia I Barroso, María L García-Rubio, Emanuela Tumini, Emilia Herrera-Moyano, Andrés Aguilera. Nature 2014
323
9

Senataxin resolves RNA:DNA hybrids forming at DNA double-strand breaks to prevent translocations.
Sarah Cohen, Nadine Puget, Yea-Lih Lin, Thomas Clouaire, Marion Aguirrebengoa, Vincent Rocher, Philippe Pasero, Yvan Canitrot, Gaëlle Legube. Nat Commun 2018
169
9

GADD45A binds R-loops and recruits TET1 to CpG island promoters.
Khelifa Arab, Emil Karaulanov, Michael Musheev, Philipp Trnka, Andrea Schäfer, Ingrid Grummt, Christof Niehrs. Nat Genet 2019
99
9


ALBA protein complex reads genic R-loops to maintain genome stability in Arabidopsis.
Wei Yuan, Jincong Zhou, Jinjin Tong, Wanqing Zhuo, Lishuan Wang, Yan Li, Qianwen Sun, Weiqiang Qian. Sci Adv 2019
23
34

The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering.
Rossana Henriques, Huan Wang, Jun Liu, Marc Boix, Li-Fang Huang, Nam-Hai Chua. New Phytol 2017
64
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.