A citation-based method for searching scientific literature

Vaclav Brazda, Miroslav Fojta, Richard P Bowater. Biochem J 2020
Times Cited: 10







List of co-cited articles
48 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The Presence and Localization of G-Quadruplex Forming Sequences in the Domain of Bacteria.
Martin Bartas, Michaela Čutová, Václav Brázda, Patrik Kaura, Jiří Šťastný, Jan Kolomazník, Jan Coufal, Pratik Goswami, Jiří Červeň, Petr Pečinka. Molecules 2019
32
50

G-Quadruplexes: More Than Just a Kink in Microbial Genomes.
Nandhini Saranathan, Perumal Vivekanandan. Trends Microbiol 2019
47
40


G4IPDB: A database for G-quadruplex structure forming nucleic acid interacting proteins.
Subodh Kumar Mishra, Arpita Tawani, Amit Mishra, Amit Kumar. Sci Rep 2016
54
40

G-Quadruplexes in the Archaea Domain.
Václav Brázda, Yu Luo, Martin Bartas, Patrik Kaura, Otilia Porubiaková, Jiří Šťastný, Petr Pečinka, Daniela Verga, Violette Da Cunha, Tomio S Takahashi,[...]. Biomolecules 2020
12
40

G-quadruplexes and their regulatory roles in biology.
Daniela Rhodes, Hans J Lipps. Nucleic Acids Res 2015
707
30

Mapping and characterization of G-quadruplexes in Mycobacterium tuberculosis gene promoter regions.
Rosalba Perrone, Enrico Lavezzo, Erika Riello, Riccardo Manganelli, Giorgio Palù, Stefano Toppo, Roberta Provvedi, Sara N Richter. Sci Rep 2017
42
30

Control of bacterial nitrate assimilation by stabilization of G-quadruplex DNA.
Zoë A E Waller, Benjamin J Pinchbeck, Bhovina Seewoodharry Buguth, Timothy G Meadows, David J Richardson, Andrew J Gates. Chem Commun (Camb) 2016
22
30

G-quadruplexes in promoters throughout the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2007
820
30

Recent Progress of Targeted G-Quadruplex-Preferred Ligands Toward Cancer Therapy.
Sefan Asamitsu, Shunsuke Obata, Zutao Yu, Toshikazu Bando, Hiroshi Sugiyama. Molecules 2019
116
30

DNA and RNA quadruplex-binding proteins.
Václav Brázda, Lucia Hároníková, Jack C C Liao, Miroslav Fojta. Int J Mol Sci 2014
149
30

Cruciform DNA Sequences in Gene Promoters Can Impact Transcription upon Oxidative Modification of 2'-Deoxyguanosine.
Aaron M Fleming, Judy Zhu, Manuel Jara-Espejo, Cynthia J Burrows. Biochemistry 2020
4
75

Recognition of Local DNA Structures by p53 Protein.
Václav Brázda, Jan Coufal. Int J Mol Sci 2017
26
30

Palindrome analyser - A new web-based server for predicting and evaluating inverted repeats in nucleotide sequences.
Václav Brázda, Jan Kolomazník, Jiří Lýsek, Lucia Hároníková, Jan Coufal, Jiří Št'astný. Biochem Biophys Res Commun 2016
31
30

G4Hunter web application: a web server for G-quadruplex prediction.
Václav Brázda, Jan Kolomazník, Jiří Lýsek, Martin Bartas, Miroslav Fojta, Jiří Šťastný, Jean-Louis Mergny. Bioinformatics 2019
46
30

In the sense of transcription regulation by G-quadruplexes: asymmetric effects in sense and antisense strands.
Tani Agarwal, Saumya Roy, Santosh Kumar, Tushar Kanti Chakraborty, Souvik Maiti. Biochemistry 2014
32
20

G-quadruplex prediction in E. coli genome reveals a conserved putative G-quadruplex-Hairpin-Duplex switch.
Oktay I Kaplan, Burak Berber, Nezih Hekim, Osman Doluca. Nucleic Acids Res 2016
30
20

Quadruplex DNA: sequence, topology and structure.
Sarah Burge, Gary N Parkinson, Pascale Hazel, Alan K Todd, Stephen Neidle. Nucleic Acids Res 2006
20

Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation.
Pooja Rawal, Veera Bhadra Rao Kummarasetti, Jinoy Ravindran, Nirmal Kumar, Kangkan Halder, Rakesh Sharma, Mitali Mukerji, Swapan Kumar Das, Shantanu Chowdhury. Genome Res 2006
229
20

Characterization of G-Quadruplex Motifs in espB, espK, and cyp51 Genes of Mycobacterium tuberculosis as Potential Drug Targets.
Subodh Kumar Mishra, Uma Shankar, Neha Jain, Kriti Sikri, Jaya Sivaswami Tyagi, Tarun Kumar Sharma, Jean-Louis Mergny, Amit Kumar. Mol Ther Nucleic Acids 2019
15
20

G-quadruplex forming structural motifs in the genome of Deinococcus radiodurans and their regulatory roles in promoter functions.
Swathi Kota, V Dhamodharan, P I Pradeepkumar, Hari S Misra. Appl Microbiol Biotechnol 2015
29
20

G-quadruplexes and G-quadruplex ligands: targets and tools in antiviral therapy.
Emanuela Ruggiero, Sara N Richter. Nucleic Acids Res 2018
159
20


Characterization of highly conserved G-quadruplex motifs as potential drug targets in Streptococcus pneumoniae.
Subodh Kumar Mishra, Neha Jain, Uma Shankar, Arpita Tawani, Tarun Kumar Sharma, Amit Kumar. Sci Rep 2019
20
20



In-Depth Bioinformatic Analyses of Nidovirales Including Human SARS-CoV-2, SARS-CoV, MERS-CoV Viruses Suggest Important Roles of Non-canonical Nucleic Acid Structures in Their Lifecycles.
Martin Bartas, Václav Brázda, Natália Bohálová, Alessio Cantara, Adriana Volná, Tereza Stachurová, Kateřina Malachová, Eva B Jagelská, Otília Porubiaková, Jiří Červeň,[...]. Front Microbiol 2020
24
20

Non-B DB v2.0: a database of predicted non-B DNA-forming motifs and its associated tools.
Regina Z Cer, Duncan E Donohue, Uma S Mudunuri, Nuri A Temiz, Michael A Loss, Nathan J Starner, Goran N Halusa, Natalia Volfovsky, Ming Yi, Brian T Luke,[...]. Nucleic Acids Res 2013
69
20

Proteins Recognizing DNA: Structural Uniqueness and Versatility of DNA-Binding Domains in Stem Cell Transcription Factors.
Dhanusha Yesudhas, Maria Batool, Muhammad Ayaz Anwar, Suresh Panneerselvam, Sangdun Choi. Genes (Basel) 2017
12
20

p73, like its p53 homolog, shows preference for inverted repeats forming cruciforms.
Jana Čechová, Jan Coufal, Eva B Jagelská, Miroslav Fojta, Václav Brázda. PLoS One 2018
7
28

Properties and biological impact of RNA G-quadruplexes: from order to turmoil and back.
Prakash Kharel, Gertraud Becker, Vladimir Tsvetkov, Pavel Ivanov. Nucleic Acids Res 2020
25
20

Identification of G-Quadruplex-Binding Protein from the Exploration of RGG Motif/G-Quadruplex Interactions.
Zhou-Li Huang, Jing Dai, Wen-Hua Luo, Xiang-Gui Wang, Jia-Heng Tan, Shuo-Bin Chen, Zhi-Shu Huang. J Am Chem Soc 2018
28
20

Cruciform structures are a common DNA feature important for regulating biological processes.
Václav Brázda, Rob C Laister, Eva B Jagelská, Cheryl Arrowsmith. BMC Mol Biol 2011
136
20

The Amino Acid Composition of Quadruplex Binding Proteins Reveals a Shared Motif and Predicts New Potential Quadruplex Interactors.
Václav Brázda, Jiří Červeň, Martin Bartas, Nikol Mikysková, Jan Coufal, Petr Pečinka. Molecules 2018
26
20

Chemical biology of non-canonical structures of nucleic acids for therapeutic applications.
Hisae Tateishi-Karimata, Naoki Sugimoto. Chem Commun (Camb) 2020
26
20

Preferential binding of IFI16 protein to cruciform structure and superhelical DNA.
Václav Brázda, Jan Coufal, Jack C C Liao, Cheryl H Arrowsmith. Biochem Biophys Res Commun 2012
47
20

The G4 genome.
Nancy Maizels, Lucas T Gray. PLoS Genet 2013
316
20


QuadBase2: web server for multiplexed guanine quadruplex mining and visualization.
Parashar Dhapola, Shantanu Chowdhury. Nucleic Acids Res 2016
52
20

Prevalence of quadruplexes in the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2005
20


A guide to computational methods for G-quadruplex prediction.
Emilia Puig Lombardi, Arturo Londoño-Vallejo. Nucleic Acids Res 2020
39
20

Viral G-quadruplexes: New frontiers in virus pathogenesis and antiviral therapy.
Emanuela Ruggiero, Sara N Richter. Annu Rep Med Chem 2020
29
20

Re-evaluation of G-quadruplex propensity with G4Hunter.
Amina Bedrat, Laurent Lacroix, Jean-Louis Mergny. Nucleic Acids Res 2016
260
20

G-quadruplex structures in TP53 intron 3: role in alternative splicing and in production of p53 mRNA isoforms.
Virginie Marcel, Phong L T Tran, Charlotte Sagne, Ghyslaine Martel-Planche, Laurence Vaslin, Marie-Paule Teulade-Fichou, Janet Hall, Jean-Louis Mergny, Pierre Hainaut, Eric Van Dyck. Carcinogenesis 2011
141
20

Non-B DNA: a major contributor to small- and large-scale variation in nucleotide substitution frequencies across the genome.
Wilfried M Guiblet, Marzia A Cremona, Robert S Harris, Di Chen, Kristin A Eckert, Francesca Chiaromonte, Yi-Fei Huang, Kateryna D Makova. Nucleic Acids Res 2021
6
33


Landscape of G-quadruplex DNA structural regions in breast cancer.
Robert Hänsel-Hertsch, Angela Simeone, Abigail Shea, Winnie W I Hui, Katherine G Zyner, Giovanni Marsico, Oscar M Rueda, Alejandra Bruna, Alistair Martin, Xiaoyun Zhang,[...]. Nat Genet 2020
33
20

The G-quadruplex-interactive molecule BRACO-19 inhibits tumor growth, consistent with telomere targeting and interference with telomerase function.
Angelika M Burger, Fangping Dai, Christoph M Schultes, Anthony P Reszka, Michael J Moore, John A Double, Stephen Neidle. Cancer Res 2005
375
10

Genome-wide analysis reveals a regulatory role for G-quadruplexes during Adenovirus multiplication.
Prativa Majee, Uma Shankar, Sanjeev Pasadi, K Muniyappa, Debasis Nayak, Amit Kumar. Virus Res 2020
7
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.