A citation-based method for searching scientific literature

Evan Gatev, Nicole Gladish, Sara Mostafavi, Michael S Kobor. Bioinformatics 2020
Times Cited: 7







List of co-cited articles
38 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A data-driven approach to preprocessing Illumina 450K methylation array data.
Ruth Pidsley, Chloe C Y Wong, Manuela Volta, Katie Lunnon, Jonathan Mill, Leonard C Schalkwyk. BMC Genomics 2013
516
71

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.
Martin J Aryee, Andrew E Jaffe, Hector Corrada-Bravo, Christine Ladd-Acosta, Andrew P Feinberg, Kasper D Hansen, Rafael A Irizarry. Bioinformatics 2014
71

DNA methylation arrays as surrogate measures of cell mixture distribution.
Eugene Andres Houseman, William P Accomando, Devin C Koestler, Brock C Christensen, Carmen J Marsit, Heather H Nelson, John K Wiencke, Karl T Kelsey. BMC Bioinformatics 2012
57

Additional annotation enhances potential for biologically-relevant analysis of the Illumina Infinium HumanMethylation450 BeadChip array.
Magda E Price, Allison M Cotton, Lucia L Lam, Pau Farré, Eldon Emberly, Carolyn J Brown, Wendy P Robinson, Michael S Kobor. Epigenetics Chromatin 2013
311
57

Integration of DNA methylation patterns and genetic variation in human pediatric tissues help inform EWAS design and interpretation.
Sumaiya A Islam, Sarah J Goodman, Julia L MacIsaac, Jelena Obradović, Ronald G Barr, W Thomas Boyce, Michael S Kobor. Epigenetics Chromatin 2019
12
42

Large epigenome-wide association study of childhood ADHD identifies peripheral DNA methylation associated with disease and polygenic risk burden.
Michael A Mooney, Peter Ryabinin, Beth Wilmot, Priya Bhatt, Jonathan Mill, Joel T Nigg. Transl Psychiatry 2020
16
42

BECon: a tool for interpreting DNA methylation findings from blood in the context of brain.
R D Edgar, M J Jones, M J Meaney, G Turecki, M S Kobor. Transl Psychiatry 2017
97
42

Systematic identification of genetic influences on methylation across the human life course.
Tom R Gaunt, Hashem A Shihab, Gibran Hemani, Josine L Min, Geoff Woodward, Oliver Lyttleton, Jie Zheng, Aparna Duggirala, Wendy L McArdle, Karen Ho,[...]. Genome Biol 2016
266
42

Next-generation genotype imputation service and methods.
Sayantan Das, Lukas Forer, Sebastian Schönherr, Carlo Sidore, Adam E Locke, Alan Kwong, Scott I Vrieze, Emily Y Chew, Shawn Levy, Matt McGue,[...]. Nat Genet 2016
28

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
28


Meta-analysis of epigenome-wide association studies of cognitive abilities.
Riccardo E Marioni, Allan F McRae, Jan Bressler, Elena Colicino, Eilis Hannon, Shuo Li, Diddier Prada, Jennifer A Smith, Letizia Trevisi, Pei-Chien Tsai,[...]. Mol Psychiatry 2018
33
28

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
28

Epigenetic vestiges of early developmental adversity: childhood stress exposure and DNA methylation in adolescence.
Marilyn J Essex, W Thomas Boyce, Clyde Hertzman, Lucia L Lam, Jeffrey M Armstrong, Sarah M A Neumann, Michael S Kobor. Child Dev 2013
231
28

Second-generation PLINK: rising to the challenge of larger and richer datasets.
Christopher C Chang, Carson C Chow, Laurent Cam Tellier, Shashaank Vattikuti, Shaun M Purcell, James J Lee. Gigascience 2015
28

Adjusting batch effects in microarray expression data using empirical Bayes methods.
W Evan Johnson, Cheng Li, Ariel Rabinovic. Biostatistics 2007
28

An international study exploring levels of postpartum depressive symptomatology.
D D Affonso, A K De, J A Horowitz, L J Mayberry. J Psychosom Res 2000
221
28

Factors underlying variable DNA methylation in a human community cohort.
Lucia L Lam, Eldon Emberly, Hunter B Fraser, Sarah M Neumann, Edith Chen, Gregory E Miller, Michael S Kobor. Proc Natl Acad Sci U S A 2012
267
28

Improving cell mixture deconvolution by identifying optimal DNA methylation libraries (IDOL).
Devin C Koestler, Meaghan J Jones, Joseph Usset, Brock C Christensen, Rondi A Butler, Michael S Kobor, John K Wiencke, Karl T Kelsey. BMC Bioinformatics 2016
54
28


Analysis of DNA methylation in a three-generation family reveals widespread genetic influence on epigenetic regulation.
Jason Gertz, Katherine E Varley, Timothy E Reddy, Kevin M Bowling, Florencia Pauli, Stephanie L Parker, Katerina S Kucera, Huntington F Willard, Richard M Myers. PLoS Genet 2011
199
28

Exposure to childhood abuse is associated with human sperm DNA methylation.
Andrea L Roberts, Nicole Gladish, Evan Gatev, Meaghan J Jones, Ying Chen, Julia L MacIsaac, Shelley S Tworoger, S Bryn Austin, Cigdem Tanrikut, Jorge E Chavarro,[...]. Transl Psychiatry 2018
23
28

Principles and Challenges of Applying Epigenetic Epidemiology to Psychology.
Meaghan J Jones, Sarah R Moore, Michael S Kobor. Annu Rev Psychol 2018
29
28

Length bias correction in gene ontology enrichment analysis using logistic regression.
Gu Mi, Yanming Di, Sarah Emerson, Jason S Cumbie, Jeff H Chang. PLoS One 2012
20
28

Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome.
Warren A Cheung, Xiaojian Shao, Andréanne Morin, Valérie Siroux, Tony Kwan, Bing Ge, Dylan Aïssi, Lu Chen, Louella Vasquez, Fiona Allum,[...]. Genome Biol 2017
46
28

Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling.
Ruth Pidsley, Elena Zotenko, Timothy J Peters, Mitchell G Lawrence, Gail P Risbridger, Peter Molloy, Susan Van Djik, Beverly Muhlhausler, Clare Stirzaker, Susan J Clark. Genome Biol 2016
401
28

Genome-wide methylation profiles reveal quantitative views of human aging rates.
Gregory Hannum, Justin Guinney, Ling Zhao, Li Zhang, Guy Hughes, SriniVas Sadda, Brandy Klotzle, Marina Bibikova, Jian-Bing Fan, Yuan Gao,[...]. Mol Cell 2013
28

A practical guide to methods controlling false discoveries in computational biology.
Keegan Korthauer, Patrick K Kimes, Claire Duvallet, Alejandro Reyes, Ayshwarya Subramanian, Mingxiang Teng, Chinmay Shukla, Eric J Alm, Stephanie C Hicks. Genome Biol 2019
40
28

Biological embedding of experience: A primer on epigenetics.
Maria J Aristizabal, Ina Anreiter, Thorhildur Halldorsdottir, Candice L Odgers, Thomas W McDade, Anna Goldenberg, Sara Mostafavi, Michael S Kobor, Elisabeth B Binder, Marla B Sokolowski,[...]. Proc Natl Acad Sci U S A 2020
40
28

Impact of cytosine methylation on DNA binding specificities of human transcription factors.
Yimeng Yin, Ekaterina Morgunova, Arttu Jolma, Eevi Kaasinen, Biswajyoti Sahu, Syed Khund-Sayeed, Pratyush K Das, Teemu Kivioja, Kashyap Dave, Fan Zhong,[...]. Science 2017
410
28

Functional normalization of 450k methylation array data improves replication in large cancer studies.
Jean-Philippe Fortin, Aurélie Labbe, Mathieu Lemire, Brent W Zanke, Thomas J Hudson, Elana J Fertig, Celia Mt Greenwood, Kasper D Hansen. Genome Biol 2014
359
28


De novo identification of differentially methylated regions in the human genome.
Timothy J Peters, Michael J Buckley, Aaron L Statham, Ruth Pidsley, Katherine Samaras, Reginald V Lord, Susan J Clark, Peter L Molloy. Epigenetics Chromatin 2015
363
28

Identification of 55,000 Replicated DNA Methylation QTL.
Allan F McRae, Riccardo E Marioni, Sonia Shah, Jian Yang, Joseph E Powell, Sarah E Harris, Jude Gibson, Anjali K Henders, Lisa Bowdler, Jodie N Painter,[...]. Sci Rep 2018
71
28

A genomic atlas of systemic interindividual epigenetic variation in humans.
Chathura J Gunasekara, C Anthony Scott, Eleonora Laritsky, Maria S Baker, Harry MacKay, Jack D Duryea, Noah J Kessler, Garrett Hellenthal, Alexis C Wood, Kelly R Hodges,[...]. Genome Biol 2019
27
28

SeSAMe: reducing artifactual detection of DNA methylation by Infinium BeadChips in genomic deletions.
Wanding Zhou, Timothy J Triche, Peter W Laird, Hui Shen. Nucleic Acids Res 2018
54
28

Comprehensive analysis of DNA methylation data with RnBeads.
Yassen Assenov, Fabian Müller, Pavlo Lutsik, Jörn Walter, Thomas Lengauer, Christoph Bock. Nat Methods 2014
370
28

RnBeads 2.0: comprehensive analysis of DNA methylation data.
Fabian Müller, Michael Scherer, Yassen Assenov, Pavlo Lutsik, Jörn Walter, Thomas Lengauer, Christoph Bock. Genome Biol 2019
60
28


The neuropathology of older persons with and without dementia from community versus clinic cohorts.
Julie A Schneider, Neelum T Aggarwal, Lisa Barnes, Patricia Boyle, David A Bennett. J Alzheimers Dis 2009
205
14

Blood-brain barrier breakdown is an early biomarker of human cognitive dysfunction.
Daniel A Nation, Melanie D Sweeney, Axel Montagne, Abhay P Sagare, Lina M D'Orazio, Maricarmen Pachicano, Farshid Sepehrband, Amy R Nelson, David P Buennagel, Michael G Harrington,[...]. Nat Med 2019
431
14

Religious Orders Study and Rush Memory and Aging Project.
David A Bennett, Aron S Buchman, Patricia A Boyle, Lisa L Barnes, Robert S Wilson, Julie A Schneider. J Alzheimers Dis 2018
235
14

Methylomic profiling implicates cortical deregulation of ANK1 in Alzheimer's disease.
Katie Lunnon, Rebecca Smith, Eilis Hannon, Philip L De Jager, Gyan Srivastava, Manuela Volta, Claire Troakes, Safa Al-Sarraj, Joe Burrage, Ruby Macdonald,[...]. Nat Neurosci 2014
296
14

Pericyte-derived glial cell line-derived neurotrophic factor increase the expression of claudin-5 in the blood-brain barrier and the blood-nerve barrier.
Fumitaka Shimizu, Yasuteru Sano, Kazuyuki Saito, Masa-aki Abe, Toshihiko Maeda, Hiroyo Haruki, Takashi Kanda. Neurochem Res 2012
69
14

Powerful and Efficient Strategies for Genetic Association Testing of Symptom and Questionnaire Data in Psychiatric Genetic Studies.
Aaron M Holleman, K Alaine Broadaway, Richard Duncan, Andrei Todor, Lynn M Almli, Bekh Bradley, Kerry J Ressler, Debashis Ghosh, Jennifer G Mulle, Michael P Epstein. Sci Rep 2019
1
100

Alzheimer's disease: early alterations in brain DNA methylation at ANK1, BIN1, RHBDF2 and other loci.
Philip L De Jager, Gyan Srivastava, Katie Lunnon, Jeremy Burgess, Leonard C Schalkwyk, Lei Yu, Matthew L Eaton, Brendan T Keenan, Jason Ernst, Cristin McCabe,[...]. Nat Neurosci 2014
473
14


Blood-brain barrier breakdown in the aging human hippocampus.
Axel Montagne, Samuel R Barnes, Melanie D Sweeney, Matthew R Halliday, Abhay P Sagare, Zhen Zhao, Arthur W Toga, Russell E Jacobs, Collin Y Liu, Lilyana Amezcua,[...]. Neuron 2015
843
14

Molecular adaptations of the blood-brain barrier promote stress resilience vs. depression.
Katarzyna A Dudek, Laurence Dion-Albert, Manon Lebel, Katherine LeClair, Simon Labrecque, Ellen Tuck, Carmen Ferrer Perez, Sam A Golden, Carol Tamminga, Gustavo Turecki,[...]. Proc Natl Acad Sci U S A 2020
64
14

Alterations in the blood brain barrier in ageing cerebral cortex in relationship to Alzheimer-type pathology: a study in the MRC-CFAS population neuropathology cohort.
Andrew P Viggars, Stephen B Wharton, Julie E Simpson, Fiona E Matthews, Carol Brayne, George M Savva, Claire Garwood, David Drew, Pamela J Shaw, Paul G Ince. Neurosci Lett 2011
62
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.