A citation-based method for searching scientific literature

Eleanor Young, Heba Z Abid, Pui-Yan Kwok, Harold Riethman, Ming Xiao. PLoS Genet 2020
Times Cited: 11







List of co-cited articles
92 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication.
Elena V Linardopoulou, Eleanor M Williams, Yuxin Fan, Cynthia Friedman, Janet M Young, Barbara J Trask. Nature 2005
257
45

High-throughput single-molecule mapping links subtelomeric variants and long-range haplotypes with specific telomeres.
Eleanor Young, Steven Pastor, Ramakrishnan Rajagopalan, Jennifer McCaffrey, Justin Sibert, Angel C Y Mak, Pui-Yan Kwok, Harold Riethman, Ming Xiao. Nucleic Acids Res 2017
14
45

Genome maps across 26 human populations reveal population-specific patterns of structural variation.
Michal Levy-Sakin, Steven Pastor, Yulia Mostovoy, Le Li, Alden K Y Leung, Jennifer McCaffrey, Eleanor Young, Ernest T Lam, Alex R Hastie, Karen H Y Wong,[...]. Nat Commun 2019
45
45

Genome mapping on nanochannel arrays for structural variation analysis and sequence assembly.
Ernest T Lam, Alex Hastie, Chin Lin, Dean Ehrlich, Somes K Das, Michael D Austin, Paru Deshpande, Han Cao, Niranjan Nagarajan, Ming Xiao,[...]. Nat Biotechnol 2012
311
45

Subtelomeric CTCF and cohesin binding site organization using improved subtelomere assemblies and a novel annotation pipeline.
Nicholas Stong, Zhong Deng, Ravi Gupta, Sufen Hu, Shiela Paul, Amber K Weiner, Evan E Eichler, Tina Graves, Catrina C Fronick, Laura Courtney,[...]. Genome Res 2014
40
36

Highly condensed chromatins are formed adjacent to subtelomeric and decondensed silent chromatin in fission yeast.
Atsushi Matsuda, Yuji Chikashige, Da-Qiao Ding, Chizuru Ohtsuki, Chie Mori, Haruhiko Asakawa, Hiroshi Kimura, Tokuko Haraguchi, Yasushi Hiraoka. Nat Commun 2015
39
36

Subtelomeres constitute a safeguard for gene expression and chromosome homeostasis.
Sanki Tashiro, Yuki Nishihara, Kazuto Kugou, Kunihiro Ohta, Junko Kanoh. Nucleic Acids Res 2017
24
36

High-throughput single-molecule telomere characterization.
Jennifer McCaffrey, Eleanor Young, Katy Lassahn, Justin Sibert, Steven Pastor, Harold Riethman, Ming Xiao. Genome Res 2017
21
36


Rapid expansion and functional divergence of subtelomeric gene families in yeasts.
Chris A Brown, Andrew W Murray, Kevin J Verstrepen. Curr Biol 2010
180
27

Common Bean Subtelomeres Are Hot Spots of Recombination and Favor Resistance Gene Evolution.
Nicolas W G Chen, Vincent Thareau, Tiago Ribeiro, Ghislaine Magdelenat, Tom Ashfield, Roger W Innes, Andrea Pedrosa-Harand, Valérie Geffroy. Front Plant Sci 2018
17
27

TERRA RNA Antagonizes ATRX and Protects Telomeres.
Hsueh-Ping Chu, Catherine Cifuentes-Rojas, Barry Kesner, Eric Aeby, Hun-Goo Lee, Chunyao Wei, Hyun Jung Oh, Myriam Boukhali, Wilhelm Haas, Jeannie T Lee. Cell 2017
99
27

Drosophila telomeres: an exception providing new insights.
James M Mason, Radmila Capkova Frydrychova, Harald Biessmann. Bioessays 2008
92
27

Shugoshin forms a specialized chromatin domain at subtelomeres that regulates transcription and replication timing.
Sanki Tashiro, Tetsuya Handa, Atsushi Matsuda, Takuto Ban, Toru Takigawa, Kazumi Miyasato, Kojiro Ishii, Kazuto Kugou, Kunihiro Ohta, Yasushi Hiraoka,[...]. Nat Commun 2016
19
27

The complex structure and dynamic evolution of human subtelomeres.
Heather C Mefford, Barbara J Trask. Nat Rev Genet 2002
218
27

Contrasting evolutionary genome dynamics between domesticated and wild yeasts.
Jia-Xing Yue, Jing Li, Louise Aigrain, Johan Hallin, Karl Persson, Karen Oliver, Anders Bergström, Paul Coupland, Jonas Warringer, Marco Cosentino Lagomarsino,[...]. Nat Genet 2017
123
27

Genome-Wide Structural Variation Detection by Genome Mapping on Nanochannel Arrays.
Angel C Y Mak, Yvonne Y Y Lai, Ernest T Lam, Tsz-Piu Kwok, Alden K Y Leung, Annie Poon, Yulia Mostovoy, Alex R Hastie, William Stedman, Thomas Anantharaman,[...]. Genetics 2016
75
27

Nanopore sequencing and assembly of a human genome with ultra-long reads.
Miten Jain, Sergey Koren, Karen H Miga, Josh Quick, Arthur C Rand, Thomas A Sasani, John R Tyson, Andrew D Beggs, Alexander T Dilthey, Ian T Fiddes,[...]. Nat Biotechnol 2018
596
27

Opportunities and challenges in long-read sequencing data analysis.
Shanika L Amarasinghe, Shian Su, Xueyi Dong, Luke Zappia, Matthew E Ritchie, Quentin Gouil. Genome Biol 2020
125
27

A single-molecule barcoding system using nanoslits for DNA analysis.
Kyubong Jo, Dalia M Dhingra, Theo Odijk, Juan J de Pablo, Michael D Graham, Rod Runnheim, Dan Forrest, David C Schwartz. Proc Natl Acad Sci U S A 2007
180
27

Next-generation mapping: a novel approach for detection of pathogenic structural variants with a potential utility in clinical diagnosis.
Hayk Barseghyan, Wilson Tang, Richard T Wang, Miguel Almalvez, Eva Segura, Matthew S Bramble, Allen Lipson, Emilie D Douine, Hane Lee, Emmanuèle C Délot,[...]. Genome Med 2017
35
27

Applications of optical DNA mapping in microbiology.
Diana Bogas, Lena Nyberg, Rui Pacheco, Nuno F Azevedo, Jason P Beech, Margarita Gomila, Jorge Lalucat, Célia M Manaia, Olga C Nunes, Jonas O Tegenfeldt,[...]. Biotechniques 2017
10
30

Long-read single-molecule maps of the functional methylome.
Hila Sharim, Assaf Grunwald, Tslil Gabrieli, Yael Michaeli, Sapir Margalit, Dmitry Torchinsky, Rani Arielly, Gil Nifker, Matyas Juhasz, Felix Gularek,[...]. Genome Res 2019
14
27

CRISPR-CAS9 D10A nickase target-specific fluorescent labeling of double strand DNA for whole genome mapping and structural variation analysis.
Jennifer McCaffrey, Justin Sibert, Bin Zhang, Yonggang Zhang, Wenhui Hu, Harold Riethman, Ming Xiao. Nucleic Acids Res 2016
29
27

Telomere-to-telomere assembly of a complete human X chromosome.
Karen H Miga, Sergey Koren, Arang Rhie, Mitchell R Vollger, Ariel Gershman, Andrey Bzikadze, Shelise Brooks, Edmund Howe, David Porubsky, Glennis A Logsdon,[...]. Nature 2020
116
27

Single-molecule analysis of subtelomeres and telomeres in Alternative Lengthening of Telomeres (ALT) cells.
Heba Z Abid, Jennifer McCaffrey, Kaitlin Raseley, Eleanor Young, Katy Lassahn, Dharma Varapula, Harold Riethman, Ming Xiao. BMC Genomics 2020
4
75

Multi-platform discovery of haplotype-resolved structural variation in human genomes.
Mark J P Chaisson, Ashley D Sanders, Xuefang Zhao, Ankit Malhotra, David Porubsky, Tobias Rausch, Eugene J Gardner, Oscar L Rodriguez, Li Guo, Ryan L Collins,[...]. Nat Commun 2019
213
27



CpG-island promoters drive transcription of human telomeres.
Solomon G Nergadze, Benjamin O Farnung, Harry Wischnewski, Lela Khoriauli, Valerio Vitelli, Raghav Chawla, Elena Giulotto, Claus M Azzalin. RNA 2009
147
18


Telomeric repeat containing RNA and RNA surveillance factors at mammalian chromosome ends.
Claus M Azzalin, Patrick Reichenbach, Lela Khoriauli, Elena Giulotto, Joachim Lingner. Science 2007
809
18

RNaseH1 regulates TERRA-telomeric DNA hybrids and telomere maintenance in ALT tumour cells.
Rajika Arora, Yongwoo Lee, Harry Wischnewski, Catherine M Brun, Tobias Schwarz, Claus M Azzalin. Nat Commun 2014
196
18

siRNA-mediated methylation of Arabidopsis telomeres.
Jan Vrbsky, Svetlana Akimcheva, J Matthew Watson, Thomas L Turner, Lucia Daxinger, Boris Vyskot, Werner Aufsatz, Karel Riha. PLoS Genet 2010
89
18

Elevated rates of sister chromatid exchange at chromosome ends.
M Katharine Rudd, Cynthia Friedman, Sean S Parghi, Elena V Linardopoulou, Li Hsu, Barbara J Trask. PLoS Genet 2007
45
18

Position effect at S. cerevisiae telomeres: reversible repression of Pol II transcription.
D E Gottschling, O M Aparicio, B L Billington, V A Zakian. Cell 1990
18

The epigenetic regulation of mammalian telomeres.
María A Blasco. Nat Rev Genet 2007
461
18

Human subtelomeric WASH genes encode a new subclass of the WASP family.
Elena V Linardopoulou, Sean S Parghi, Cynthia Friedman, Gregory E Osborn, Susan M Parkhurst, Barbara J Trask. PLoS Genet 2007
141
18

Telomere functions grounding on TERRA firma.
Claus M Azzalin, Joachim Lingner. Trends Cell Biol 2015
111
18

Comprehensive analysis of heterochromatin- and RNAi-mediated epigenetic control of the fission yeast genome.
Hugh P Cam, Tomoyasu Sugiyama, Ee Sin Chen, Xi Chen, Peter C FitzGerald, Shiv I S Grewal. Nat Genet 2005
370
18

Telomere position effect: regulation of gene expression with progressive telomere shortening over long distances.
Jérôme D Robin, Andrew T Ludlow, Kimberly Batten, Frédérique Magdinier, Guido Stadler, Kathyrin R Wagner, Jerry W Shay, Woodring E Wright. Genes Dev 2014
143
18


Telomere folding is required for the stable maintenance of telomere position effects in yeast.
D de Bruin, S M Kantrow, R A Liberatore, V A Zakian. Mol Cell Biol 2000
95
18


Shelterin-Mediated Telomere Protection.
Titia de Lange. Annu Rev Genet 2018
206
18

Structural stability and chromosome-specific telomere length is governed by cis-acting determinants in humans.
Bethan Britt-Compton, Jan Rowson, Matthew Locke, Ian Mackenzie, David Kipling, Duncan M Baird. Hum Mol Genet 2006
87
18

Shelterin and subtelomeric DNA sequences control nucleosome maintenance and genome stability.
Thomas S van Emden, Marta Forn, Ignasi Forné, Zsuzsa Sarkadi, Matías Capella, Lucía Martín Caballero, Sabine Fischer-Burkart, Cornelia Brönner, Marco Simonetta, David Toczyski,[...]. EMBO Rep 2019
14
18

A subtelomeric region affects telomerase-negative replicative senescence in Saccharomyces cerevisiae.
Pascale Jolivet, Kamar Serhal, Marco Graf, Stephan Eberhard, Zhou Xu, Brian Luke, Maria Teresa Teixeira. Sci Rep 2019
4
50

DNA methyltransferases control telomere length and telomere recombination in mammalian cells.
Susana Gonzalo, Isabel Jaco, Mario F Fraga, Taiping Chen, En Li, Manel Esteller, María A Blasco. Nat Cell Biol 2006
418
18

Telomeres in ICF syndrome cells are vulnerable to DNA damage due to elevated DNA:RNA hybrids.
Shira Sagie, Shir Toubiana, Stella R Hartono, Hagar Katzir, Aya Tzur-Gilat, Shany Havazelet, Claire Francastel, Guillaume Velasco, Frédéric Chédin, Sara Selig. Nat Commun 2017
52
18


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.