A citation-based method for searching scientific literature

Bingrong Zhou, Yu Chen Zhao, Hongliang Liu, Sheng Luo, Christopher I Amos, Jeffrey E Lee, Xin Li, Hongmei Nan, Qingyi Wei. Cancers (Basel) 2020
Times Cited: 3







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


CircRNA circ_0026344 as a prognostic biomarker suppresses colorectal cancer progression via microRNA-21 and microRNA-31.
Yuan Yuan, Wei Liu, Yangmei Zhang, Youwei Zhang, Sanyuan Sun. Biochem Biophys Res Commun 2018
80
33

Circulating microRNA-1290 as a novel diagnostic and prognostic biomarker in human colorectal cancer.
H Imaoka, Y Toiyama, H Fujikawa, J Hiro, S Saigusa, K Tanaka, Y Inoue, Y Mohri, T Mori, T Kato,[...]. Ann Oncol 2016
91
33

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation.
Cole Trapnell, Brian A Williams, Geo Pertea, Ali Mortazavi, Gordon Kwan, Marijke J van Baren, Steven L Salzberg, Barbara J Wold, Lior Pachter. Nat Biotechnol 2010
33

Aberrant glycosylation in colorectal cancer with genomic and epigenomic alterations.
Hirokazu Okayama, Masaru Noda, Koji Kono. Oncotarget 2018
1
100

CXCL12-mediated HOXB5 overexpression facilitates Colorectal Cancer metastasis through transactivating CXCR4 and ITGB3.
Weibo Feng, Wenjie Huang, Jie Chen, Chenyang Qiao, Danfei Liu, Xiaoyu Ji, Meng Xie, Tongyue Zhang, Yijun Wang, Mengyu Sun,[...]. Theranostics 2021
14
33

Core 3 mucin-type O-glycan restoration in colorectal cancer cells promotes MUC1/p53/miR-200c-dependent epithelial identity.
J Ye, X Wei, Y Shang, Q Pan, M Yang, Y Tian, Y He, Z Peng, L Chen, W Chen,[...]. Oncogene 2017
13
33

Glycosyltransferase Gene Expression Identifies a Poor Prognostic Colorectal Cancer Subtype Associated with Mismatch Repair Deficiency and Incomplete Glycan Synthesis.
Masaru Noda, Hirokazu Okayama, Kazunoshin Tachibana, Wataru Sakamoto, Katsuharu Saito, Aung Kyi Thar Min, Mai Ashizawa, Takahiro Nakajima, Keita Aoto, Tomoyuki Momma,[...]. Clin Cancer Res 2018
26
33

CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine.
Lei Kong, Yong Zhang, Zhi-Qiang Ye, Xiao-Qiao Liu, Shu-Qi Zhao, Liping Wei, Ge Gao. Nucleic Acids Res 2007
33

Novel 5 alpha-steroid reductase (SRD5A3, type-3) is overexpressed in hormone-refractory prostate cancer.
Motohide Uemura, Kenji Tamura, Suyoun Chung, Seijiro Honma, Akihiko Okuyama, Yusuke Nakamura, Hidewaki Nakagawa. Cancer Sci 2008
174
33

Glycomic Approaches for the Discovery of Targets in Gastrointestinal Cancer.
Stefan Mereiter, Meritxell Balmaña, Joana Gomes, Ana Magalhães, Celso A Reis. Front Oncol 2016
34
33

Mismatch repair deficient colorectal cancer in the era of personalized treatment.
Madeleine Hewish, Christopher J Lord, Sarah A Martin, David Cunningham, Alan Ashworth. Nat Rev Clin Oncol 2010
157
33

OncoVar: an integrated database and analysis platform for oncogenic driver variants in cancers.
Tao Wang, Shasha Ruan, Xiaolu Zhao, Xiaohui Shi, Huajing Teng, Jianing Zhong, Mingcong You, Kun Xia, Zhongsheng Sun, Fengbiao Mao. Nucleic Acids Res 2021
21
33

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions.
Daehwan Kim, Geo Pertea, Cole Trapnell, Harold Pimentel, Ryan Kelley, Steven L Salzberg. Genome Biol 2013
33

Colonic carcinogenesis along different genetic routes: glycophenotyping of tumor cases separated by microsatellite instability/stability.
Johannes Gebert, Matthias Kloor, Jennifer Lee, Michaela Lohr, Sabine André, Rudolf Wagner, Juergen Kopitz, Hans-Joachim Gabius. Histochem Cell Biol 2012
20
33

Core 3 synthase is down-regulated in colon carcinoma and profoundly suppresses the metastatic potential of carcinoma cells.
Toshie Iwai, Takashi Kudo, Risa Kawamoto, Tomomi Kubota, Akira Togayachi, Toru Hiruma, Tomoko Okada, Toru Kawamoto, Kyoei Morozumi, Hisashi Narimatsu. Proc Natl Acad Sci U S A 2005
111
33

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads.
Mihaela Pertea, Geo M Pertea, Corina M Antonescu, Tsung-Cheng Chang, Joshua T Mendell, Steven L Salzberg. Nat Biotechnol 2015
33

Sialylation of integrin beta1 is involved in radiation-induced adhesion and migration in human colon cancer cells.
Minyoung Lee, Hae-June Lee, Woo Duck Seo, Ki Hun Park, Yun-Sil Lee. Int J Radiat Oncol Biol Phys 2010
42
33

Diverse alternative back-splicing and alternative splicing landscape of circular RNAs.
Xiao-Ou Zhang, Rui Dong, Yang Zhang, Jia-Lin Zhang, Zheng Luo, Jun Zhang, Ling-Ling Chen, Li Yang. Genome Res 2016
468
33

EpCAM: another surface-to-nucleus missile.
Graham Carpenter, Monica Red Brewer. Cancer Cell 2009
49
33

CircFADS2: A potential prognostic biomarker of colorectal cancer.
Yi-Sheng Xiao, Hua-Zhang Tong, Xi-Hong Yuan, Chang-Hui Xiong, Xiao-Yang Xu, Yuan-Feng Zeng. Exp Biol Med (Maywood) 2020
12
33

A comprehensive assessment of RNA-seq protocols for degraded and low-quantity samples.
Sven Schuierer, Walter Carbone, Judith Knehr, Virginie Petitjean, Anita Fernandez, Marc Sultan, Guglielmo Roma. BMC Genomics 2017
56
33

Epigenetic Bases of Aberrant Glycosylation in Cancer.
Fabio Dall'Olio, Marco Trinchera. Int J Mol Sci 2017
27
33

Increased susceptibility to colitis and colorectal tumors in mice lacking core 3-derived O-glycans.
Guangyu An, Bo Wei, Baoyun Xia, J Michael McDaniel, Tongzhong Ju, Richard D Cummings, Jonathan Braun, Lijun Xia. J Exp Med 2007
228
33

High-resolution aCGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer.
Suet F Chin, Andrew E Teschendorff, John C Marioni, Yanzhong Wang, Nuno L Barbosa-Morais, Natalie P Thorne, Jose L Costa, Sarah E Pinder, Mark A van de Wiel, Andrew R Green,[...]. Genome Biol 2007
229
33

A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?
Leonardo Salmena, Laura Poliseno, Yvonne Tay, Lev Kats, Pier Paolo Pandolfi. Cell 2011
33

Pseudophosphatase STYX promotes tumor growth and metastasis by inhibiting FBXW7 function in colorectal cancer.
Diao He, Zida Ma, Chao Fang, Jingjing Ding, Wenming Yang, Peng Chen, Libin Huang, Cun Wang, Yongyang Yu, Lie Yang,[...]. Cancer Lett 2019
14
33



The promise of protein glycosylation for personalised medicine.
Andreia Almeida, Daniel Kolarich. Biochim Biophys Acta 2016
52
33


Steroid 5 alpha-reductase 3 (SRD5A3) promotes tumor growth and predicts poor survival of human hepatocellular carcinoma (HCC).
Qicong Mai, Dafeng Sheng, Chengcong Chen, Qing Gou, Meng Chen, Xiaoting Huang, Heng Yin, Xiaoming Chen, Zide Chen. Aging (Albany NY) 2020
4
33


Over-expression of SRD5A3 and its prognostic significance in breast cancer.
Yong-Ping Zhang, Wen-Ting Na, Xiao-Qiang Dai, Ruo-Fei Li, Jian-Xiong Wang, Ting Gao, Wei-Bo Zhang, Cheng Xiang. World J Surg Oncol 2021
3
33

Colorectal cancer.
Hermann Brenner, Matthias Kloor, Christian Peter Pox. Lancet 2014
33

Tn Antigen Expression Defines an Immune Cold Subset of Mismatch-Repair Deficient Colorectal Cancer.
Takuro Matsumoto, Hirokazu Okayama, Shotaro Nakajima, Katsuharu Saito, Hiroshi Nakano, Eisei Endo, Koji Kase, Misato Ito, Naoto Yamauchi, Leo Yamada,[...]. Int J Mol Sci 2020
2
50

Cancer statistics, 2020.
Rebecca L Siegel, Kimberly D Miller, Ahmedin Jemal. CA Cancer J Clin 2020
33

Gene expression classification of colon cancer into molecular subtypes: characterization, validation, and prognostic value.
Laetitia Marisa, Aurélien de Reyniès, Alex Duval, Janick Selves, Marie Pierre Gaub, Laure Vescovo, Marie-Christine Etienne-Grimaldi, Renaud Schiappa, Dominique Guenot, Mira Ayadi,[...]. PLoS Med 2013
766
33

HISAT: a fast spliced aligner with low memory requirements.
Daehwan Kim, Ben Langmead, Steven L Salzberg. Nat Methods 2015
33

Derivation and Validation of a Prognostic Model for Cancer Dependency Genes Based on CRISPR-Cas9 in Gastric Adenocarcinoma.
Wenjie Zhou, Junqing Li, Xiaofang Lu, Fangjie Liu, Tailai An, Xing Xiao, Zi Chong Kuo, Wenhui Wu, Yulong He. Front Oncol 2021
8
33

Characterization of lncRNA-Perturbed TLR-Signaling Network Identifies Novel lncRNA Prognostic Biomarkers in Colorectal Cancer.
Yanjie Chu, Zhiqiang Liu, Jing Liu, Lei Yu, Dekai Zhang, Fenghua Pei. Front Cell Dev Biol 2020
6
33

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts.
Liang Sun, Haitao Luo, Dechao Bu, Guoguang Zhao, Kuntao Yu, Changhai Zhang, Yuanning Liu, Runsheng Chen, Yi Zhao. Nucleic Acids Res 2013
851
33

Tumor microsatellite instability and clinical outcome in young patients with colorectal cancer.
R Gryfe, H Kim, E T Hsieh, M D Aronson, E J Holowaty, S B Bull, M Redston, S Gallinger. N Engl J Med 2000
33

The reference epigenome and regulatory chromatin landscape of chronic lymphocytic leukemia.
Renée Beekman, Vicente Chapaprieta, Núria Russiñol, Roser Vilarrasa-Blasi, Núria Verdaguer-Dot, Joost H A Martens, Martí Duran-Ferrer, Marta Kulis, François Serra, Biola M Javierre,[...]. Nat Med 2018
90
33

Identification of microRNAs and their Endonucleolytic Cleavaged target mRNAs in colorectal cancer.
Fangbin Zhou, Donge Tang, Yong Xu, Huiyan He, Yan Wu, Liewen Lin, Jun Dong, Wenyong Tan, Yong Dai. BMC Cancer 2020
10
33

cutPrimers: A New Tool for Accurate Cutting of Primers from Reads of Targeted Next Generation Sequencing.
Andrey Kechin, Uljana Boyarskikh, Alexander Kel, Maxim Filipenko. J Comput Biol 2017
190
33

Role of dutasteride in pre-clinical ETS fusion-positive prostate cancer models.
Bushra Ateeq, Adaikkalam Vellaichamy, Scott A Tomlins, Rui Wang, Qi Cao, Robert J Lonigro, Kenneth J Pienta, Sooryanarayana Varambally. Prostate 2012
11
33

Identification of Tn antigen O-GalNAc-expressing glycoproteins in human carcinomas using novel anti-Tn recombinant antibodies.
Yasuyuki Matsumoto, Matthew R Kudelka, Melinda S Hanes, Sylvain Lehoux, Sucharita Dutta, Mark B Jones, Kathryn A Stackhouse, Gabrielle E Cervoni, Jamie Heimburg-Molinaro, David F Smith,[...]. Glycobiology 2020
13
33


Glycosylation-dependent lectin-receptor interactions preserve angiogenesis in anti-VEGF refractory tumors.
Diego O Croci, Juan P Cerliani, Tomas Dalotto-Moreno, Santiago P Méndez-Huergo, Ivan D Mascanfroni, Sebastián Dergan-Dylon, Marta A Toscano, Julio J Caramelo, Juan J García-Vallejo, Jing Ouyang,[...]. Cell 2014
336
33



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.