A citation-based method for searching scientific literature

Lekha Nair, Hachung Chung, Uttiya Basu. Nat Rev Mol Cell Biol 2020
Times Cited: 76







List of co-cited articles
572 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Cellular functions of long noncoding RNAs.
Run-Wen Yao, Yang Wang, Ling-Ling Chen. Nat Cell Biol 2019
626
17

Molecular mechanisms of long noncoding RNAs.
Kevin C Wang, Howard Y Chang. Mol Cell 2011
11

RNA exosome-regulated long non-coding RNA transcription controls super-enhancer activity.
Evangelos Pefanis, Jiguang Wang, Gerson Rothschild, Junghyun Lim, David Kazadi, Jianbo Sun, Alexander Federation, Jaime Chao, Oliver Elliott, Zhi-Ping Liu,[...]. Cell 2015
266
11

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.
Thomas Derrien, Rory Johnson, Giovanni Bussotti, Andrea Tanzer, Sarah Djebali, Hagen Tilgner, Gregory Guernec, David Martin, Angelika Merkel, David G Knowles,[...]. Genome Res 2012
9

Towards a complete map of the human long non-coding RNA transcriptome.
Barbara Uszczynska-Ratajczak, Julien Lagarde, Adam Frankish, Roderic Guigó, Rory Johnson. Nat Rev Genet 2018
247
9

The functions and unique features of long intergenic non-coding RNA.
Julia D Ransohoff, Yuning Wei, Paul A Khavari. Nat Rev Mol Cell Biol 2018
521
9

Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.
Freddie Bray, Jacques Ferlay, Isabelle Soerjomataram, Rebecca L Siegel, Lindsey A Torre, Ahmedin Jemal. CA Cancer J Clin 2018
9

Unique features of long non-coding RNA biogenesis and function.
Jeffrey J Quinn, Howard Y Chang. Nat Rev Genet 2016
7

GUARDIN is a p53-responsive long non-coding RNA that is essential for genomic stability.
Wang Lai Hu, Lei Jin, An Xu, Yu Fang Wang, Rick F Thorne, Xu Dong Zhang, Mian Wu. Nat Cell Biol 2018
161
7

Long non-coding RNAs: new players in cell differentiation and development.
Alessandro Fatica, Irene Bozzoni. Nat Rev Genet 2014
7

Long Noncoding RNA and Cancer: A New Paradigm.
Arunoday Bhan, Milad Soleimani, Subhrangsu S Mandal. Cancer Res 2017
7

Long Noncoding RNAs: From Clinical Genetics to Therapeutic Targets?
Reinier A Boon, Nicolas Jaé, Lesca Holdt, Stefanie Dimmeler. J Am Coll Cardiol 2016
280
7

Noncoding RNA NORAD Regulates Genomic Stability by Sequestering PUMILIO Proteins.
Sungyul Lee, Florian Kopp, Tsung-Cheng Chang, Anupama Sataluri, Beibei Chen, Sushama Sivakumar, Hongtao Yu, Yang Xie, Joshua T Mendell. Cell 2016
475
6

Long noncoding RNA MALAT1 suppresses breast cancer metastasis.
Jongchan Kim, Hai-Long Piao, Beom-Jun Kim, Fan Yao, Zhenbo Han, Yumeng Wang, Zhenna Xiao, Ashley N Siverly, Sarah E Lawhon, Baochau N Ton,[...]. Nat Genet 2018
327
6

Long Noncoding RNAs in Cancer Pathways.
Adam M Schmitt, Howard Y Chang. Cancer Cell 2016
6

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals.
Mitchell Guttman, Ido Amit, Manuel Garber, Courtney French, Michael F Lin, David Feldser, Maite Huarte, Or Zuk, Bryce W Carey, John P Cassady,[...]. Nature 2009
6

Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters.
Tiffany Hung, Yulei Wang, Michael F Lin, Ashley K Koegel, Yojiro Kotake, Gavin D Grant, Hugo M Horlings, Nilay Shah, Christopher Umbricht, Pei Wang,[...]. Nat Genet 2011
848
6

The NORAD lncRNA assembles a topoisomerase complex critical for genome stability.
Mathias Munschauer, Celina T Nguyen, Klara Sirokman, Christina R Hartigan, Larson Hogstrom, Jesse M Engreitz, Jacob C Ulirsch, Charles P Fulco, Vidya Subramanian, Jenny Chen,[...]. Nature 2018
182
6

lincRNAs: genomics, evolution, and mechanisms.
Igor Ulitsky, David P Bartel. Cell 2013
6

Genome regulation by long noncoding RNAs.
John L Rinn, Howard Y Chang. Annu Rev Biochem 2012
6

Noncoding RNA transcription alters chromosomal topology to promote isotype-specific class switch recombination.
Gerson Rothschild, Wanwei Zhang, Junghyun Lim, Pankaj Kumar Giri, Brice Laffleur, Yiyun Chen, Mingyan Fang, Yuling Chen, Lekha Nair, Zhi-Ping Liu,[...]. Sci Immunol 2020
17
29

Endogenous microRNA sponges: evidence and controversy.
Daniel W Thomson, Marcel E Dinger. Nat Rev Genet 2016
6


The landscape of long noncoding RNAs in the human transcriptome.
Matthew K Iyer, Yashar S Niknafs, Rohit Malik, Udit Singhal, Anirban Sahu, Yasuyuki Hosono, Terrence R Barrette, John R Prensner, Joseph R Evans, Shuang Zhao,[...]. Nat Genet 2015
6


Transcription of the non-coding RNA upperhand controls Hand2 expression and heart development.
Kelly M Anderson, Douglas M Anderson, John R McAnally, John M Shelton, Rhonda Bassel-Duby, Eric N Olson. Nature 2016
199
5

Gene regulation in the immune system by long noncoding RNAs.
Y Grace Chen, Ansuman T Satpathy, Howard Y Chang. Nat Immunol 2017
386
5

Enhancers as non-coding RNA transcription units: recent insights and future perspectives.
Wenbo Li, Dimple Notani, Michael G Rosenfeld. Nat Rev Genet 2016
395
5


Site-specific DICER and DROSHA RNA products control the DNA-damage response.
Sofia Francia, Flavia Michelini, Alka Saxena, Dave Tang, Michiel de Hoon, Viviana Anelli, Marina Mione, Piero Carninci, Fabrizio d'Adda di Fagagna. Nature 2012
355
5

Damage-induced lncRNAs control the DNA damage response through interaction with DDRNAs at individual double-strand breaks.
Flavia Michelini, Sethuramasundaram Pitchiaya, Valerio Vitelli, Sheetal Sharma, Ubaldo Gioia, Fabio Pessina, Matteo Cabrini, Yejun Wang, Ilaria Capozzo, Fabio Iannelli,[...]. Nat Cell Biol 2017
181
5

N6-methyladenosine regulates the stability of RNA:DNA hybrids in human cells.
Abdulkadir Abakir, Tom C Giles, Agnese Cristini, Jeremy M Foster, Nan Dai, Marta Starczak, Alejandro Rubio-Roldan, Miaomiao Li, Maria Eleftheriou, James Crutchley,[...]. Nat Genet 2020
81
5

EXOSC10 is required for RPA assembly and controlled DNA end resection at DNA double-strand breaks.
Judit Domingo-Prim, Martin Endara-Coll, Franziska Bonath, Sonia Jimeno, Rosario Prados-Carvajal, Marc R Friedländer, Pablo Huertas, Neus Visa. Nat Commun 2019
56
7

Next-generation sequencing reveals two populations of damage-induced small RNAs at endogenous DNA double-strand breaks.
Franziska Bonath, Judit Domingo-Prim, Marcel Tarbier, Marc R Friedländer, Neus Visa. Nucleic Acids Res 2018
39
10

Revealing protein-lncRNA interaction.
Fabrizio Ferrè, Alessio Colantoni, Manuela Helmer-Citterich. Brief Bioinform 2016
302
5

The regulation and functions of the nuclear RNA exosome complex.
Cornelia Kilchert, Sina Wittmann, Lidia Vasiljeva. Nat Rev Mol Cell Biol 2016
206
5


The RNA exosome targets the AID cytidine deaminase to both strands of transcribed duplex DNA substrates.
Uttiya Basu, Fei-Long Meng, Celia Keim, Veronika Grinstein, Evangelos Pefanis, Jennifer Eccleston, Tingting Zhang, Darienne Myers, Caitlyn R Wasserman, Duane R Wesemann,[...]. Cell 2011
217
5


The IgH 3' regulatory region controls somatic hypermutation in germinal center B cells.
Pauline Rouaud, Christelle Vincent-Fabert, Alexis Saintamand, Rémi Fiancette, Marie Marquet, Isabelle Robert, Bernardo Reina-San-Martin, Eric Pinaud, Michel Cogné, Yves Denizot. J Exp Med 2013
73
5

The fundamental role of chromatin loop extrusion in physiological V(D)J recombination.
Yu Zhang, Xuefei Zhang, Zhaoqing Ba, Zhuoyi Liang, Edward W Dring, Hongli Hu, Jiangman Lou, Nia Kyritsis, Jeffrey Zurita, Muhammad S Shamim,[...]. Nature 2019
62
6

Fundamental roles of chromatin loop extrusion in antibody class switching.
Xuefei Zhang, Yu Zhang, Zhaoqing Ba, Nia Kyritsis, Rafael Casellas, Frederick W Alt. Nature 2019
58
6

Recombination centres and the orchestration of V(D)J recombination.
David G Schatz, Yanhong Ji. Nat Rev Immunol 2011
339
5

Mechanisms of lncRNA/microRNA interactions in angiogenesis.
Zhuo Zhao, Wei Sun, Ziyuan Guo, Jichang Zhang, Hongyu Yu, Bin Liu. Life Sci 2020
92
5

Landscape of transcription in human cells.
Sarah Djebali, Carrie A Davis, Angelika Merkel, Alex Dobin, Timo Lassmann, Ali Mortazavi, Andrea Tanzer, Julien Lagarde, Wei Lin, Felix Schlesinger,[...]. Nature 2012
5

Noncoding RNA transcription targets AID to divergently transcribed loci in B cells.
Evangelos Pefanis, Jiguang Wang, Gerson Rothschild, Junghyun Lim, Jaime Chao, Raul Rabadan, Aris N Economides, Uttiya Basu. Nature 2014
117
5

Nuclear Proximity of Mtr4 to RNA Exosome Restricts DNA Mutational Asymmetry.
Junghyun Lim, Pankaj Kumar Giri, David Kazadi, Brice Laffleur, Wanwei Zhang, Veronika Grinstein, Evangelos Pefanis, Lewis M Brown, Erik Ladewig, Ophélie Martin,[...]. Cell 2017
35
11

A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?
Leonardo Salmena, Laura Poliseno, Yvonne Tay, Lev Kats, Pier Paolo Pandolfi. Cell 2011
5

Circular RNAs are a large class of animal RNAs with regulatory potency.
Sebastian Memczak, Marvin Jens, Antigoni Elefsinioti, Francesca Torti, Janna Krueger, Agnieszka Rybak, Luisa Maier, Sebastian D Mackowiak, Lea H Gregersen, Mathias Munschauer,[...]. Nature 2013
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.