A citation-based method for searching scientific literature

Wei Cong, Yun Shi, Yanqing Qi, Jinyun Wu, Ling Gong, Miao He. J Neurosci Methods 2020
Times Cited: 2







List of co-cited articles
1 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Whole-organism lineage tracing by combinatorial and cumulative genome editing.
Aaron McKenna, Gregory M Findlay, James A Gagnon, Marshall S Horwitz, Alexander F Schier, Jay Shendure. Science 2016
320
100

Lineage tracing meets single-cell omics: opportunities and challenges.
Daniel E Wagner, Allon M Klein. Nat Rev Genet 2020
89
50

The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution.
James A Briggs, Caleb Weinreb, Daniel E Wagner, Sean Megason, Leonid Peshkin, Marc W Kirschner, Allon M Klein. Science 2018
204
50

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
50


The emergent landscape of the mouse gut endoderm at single-cell resolution.
Sonja Nowotschin, Manu Setty, Ying-Yi Kuo, Vincent Liu, Vidur Garg, Roshan Sharma, Claire S Simon, Nestor Saiz, Rui Gardner, Stéphane C Boutet,[...]. Nature 2019
83
50

Molecular recording of mammalian embryogenesis.
Michelle M Chan, Zachary D Smith, Stefanie Grosswendt, Helene Kretzmer, Thomas M Norman, Britt Adamson, Marco Jost, Jeffrey J Quinn, Dian Yang, Matthew G Jones,[...]. Nature 2019
104
50

A comparison of single-cell trajectory inference methods.
Wouter Saelens, Robrecht Cannoodt, Helena Todorov, Yvan Saeys. Nat Biotechnol 2019
319
50

Fundamental limits on dynamic inference from single-cell snapshots.
Caleb Weinreb, Samuel Wolock, Betsabeh K Tusi, Merav Socolovsky, Allon M Klein. Proc Natl Acad Sci U S A 2018
96
50

The embryonic cell lineage of the nematode Caenorhabditis elegans.
J E Sulston, E Schierenberg, J G White, J N Thomson. Dev Biol 1983
50

Base editors for simultaneous introduction of C-to-T and A-to-G mutations.
Rina C Sakata, Soh Ishiguro, Hideto Mori, Mamoru Tanaka, Kenji Tatsuno, Hiroki Ueda, Shogo Yamamoto, Motoaki Seki, Nanami Masuyama, Keiji Nishida,[...]. Nat Biotechnol 2020
43
50

A lineage-resolved molecular atlas of C. elegans embryogenesis at single-cell resolution.
Jonathan S Packer, Qin Zhu, Chau Huynh, Priya Sivaramakrishnan, Elicia Preston, Hannah Dueck, Derek Stefanik, Kai Tan, Cole Trapnell, Junhyong Kim,[...]. Science 2019
106
50

Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis.
Jeffrey A Farrell, Yiqun Wang, Samantha J Riesenfeld, Karthik Shekhar, Aviv Regev, Alexander F Schier. Science 2018
247
50


Spatiotemporal transcriptomics reveals the evolutionary history of the endoderm germ layer.
Tamar Hashimshony, Martin Feder, Michal Levin, Brian K Hall, Itai Yanai. Nature 2015
90
50

Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain.
Bushra Raj, Daniel E Wagner, Aaron McKenna, Shristi Pandey, Allon M Klein, Jay Shendure, James A Gagnon, Alexander F Schier. Nat Biotechnol 2018
234
50

PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells.
F Alexander Wolf, Fiona K Hamey, Mireya Plass, Jordi Solana, Joakim S Dahlin, Berthold Göttgens, Nikolaus Rajewsky, Lukas Simon, Fabian J Theis. Genome Biol 2019
222
50

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position.
Jason D Buenrostro, Paul G Giresi, Lisa C Zaba, Howard Y Chang, William J Greenleaf. Nat Methods 2013
50

RNA velocity of single cells.
Gioele La Manno, Ruslan Soldatov, Amit Zeisel, Emelie Braun, Hannah Hochgerner, Viktor Petukhov, Katja Lidschreiber, Maria E Kastriti, Peter Lönnerberg, Alessandro Furlan,[...]. Nature 2018
732
50

Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming.
Geoffrey Schiebinger, Jian Shu, Marcin Tabaka, Brian Cleary, Vidya Subramanian, Aryeh Solomon, Joshua Gould, Siyan Liu, Stacie Lin, Peter Berube,[...]. Cell 2019
106
50

Simultaneous lineage tracing and cell-type identification using CRISPR-Cas9-induced genetic scars.
Bastiaan Spanjaard, Bo Hu, Nina Mitic, Pedro Olivares-Chauvet, Sharan Janjuha, Nikolay Ninov, Jan Philipp Junker. Nat Biotechnol 2018
196
50

Macrophages: development and tissue specialization.
Chen Varol, Alexander Mildner, Steffen Jung. Annu Rev Immunol 2015
420
50

Is it possible to reconstruct an accurate cell lineage using CRISPR recorders?
Irepan Salvador-Martínez, Marco Grillo, Michalis Averof, Maximilian J Telford. Elife 2019
25
50

Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.
Allon M Klein, Linas Mazutis, Ilke Akartuna, Naren Tallapragada, Adrian Veres, Victor Li, Leonid Peshkin, David A Weitz, Marc W Kirschner. Cell 2015
50

Lineage reconstruction from clonal correlations.
Caleb Weinreb, Allon M Klein. Proc Natl Acad Sci U S A 2020
4
50

Lineage tracing on transcriptional landscapes links state to fate during differentiation.
Caleb Weinreb, Alejo Rodriguez-Fraticelli, Fernando D Camargo, Allon M Klein. Science 2020
133
50


Paraxial Mesoderm Is the Major Source of Lymphatic Endothelium.
Oliver A Stone, Didier Y R Stainier. Dev Cell 2019
33
50

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics.
Kelly Street, Davide Risso, Russell B Fletcher, Diya Das, John Ngai, Nir Yosef, Elizabeth Purdom, Sandrine Dudoit. BMC Genomics 2018
374
50

Lineage Tracing in Humans Enabled by Mitochondrial Mutations and Single-Cell Genomics.
Leif S Ludwig, Caleb A Lareau, Jacob C Ulirsch, Elena Christian, Christoph Muus, Lauren H Li, Karin Pelka, Will Ge, Yaara Oren, Alison Brack,[...]. Cell 2019
125
50

Sequencing-Based High-Throughput Neuroanatomy: From Mapseq to Bricseq and Beyond.
Xiaoyang Wu, Qi Zhang, Ling Gong, Miao He. Neurosci Bull 2021
1
100


A Designer AAV Variant Permits Efficient Retrograde Access to Projection Neurons.
D Gowanlock R Tervo, Bum-Yeol Hwang, Sarada Viswanathan, Thomas Gaj, Maria Lavzin, Kimberly D Ritola, Sarah Lindo, Susan Michael, Elena Kuleshova, David Ojala,[...]. Neuron 2016
468
50

Rational Engineering of XCaMPs, a Multicolor GECI Suite for In Vivo Imaging of Complex Brain Circuit Dynamics.
Masatoshi Inoue, Atsuya Takeuchi, Satoshi Manita, Shin-Ichiro Horigane, Masayuki Sakamoto, Ryosuke Kawakami, Kazushi Yamaguchi, Kouhei Otomo, Hiroyuki Yokoyama, Ryang Kim,[...]. Cell 2019
72
50

Reversal of neurological defects in a mouse model of Rett syndrome.
Jacky Guy, Jian Gan, Jim Selfridge, Stuart Cobb, Adrian Bird. Science 2007
750
50

Efficient genome editing in the mouse brain by local delivery of engineered Cas9 ribonucleoprotein complexes.
Brett T Staahl, Madhurima Benekareddy, Claire Coulon-Bainier, Ashwin A Banfal, Stephen N Floor, Jennifer K Sabo, Cole Urnes, Gabriela Acevedo Munares, Anirvan Ghosh, Jennifer A Doudna. Nat Biotechnol 2017
149
50

An optimized acetylcholine sensor for monitoring in vivo cholinergic activity.
Miao Jing, Yuexuan Li, Jianzhi Zeng, Pengcheng Huang, Miguel Skirzewski, Ornela Kljakic, Wanling Peng, Tongrui Qian, Ke Tan, Jing Zou,[...]. Nat Methods 2020
38
50

Wide Dispersion and Diversity of Clonally Related Inhibitory Interneurons.
Corey C Harwell, Luis C Fuentealba, Adrian Gonzalez-Cerrillo, Phillip R L Parker, Caitlyn C Gertz, Emanuele Mazzola, Miguel Turrero Garcia, Arturo Alvarez-Buylla, Constance L Cepko, Arnold R Kriegstein. Neuron 2015
60
50

Atypical behaviour and connectivity in SHANK3-mutant macaques.
Yang Zhou, Jitendra Sharma, Qiong Ke, Rogier Landman, Jingli Yuan, Hong Chen, David S Hayden, John W Fisher, Minqing Jiang, William Menegas,[...]. Nature 2019
67
50

CRISPR-Cas9 In Vivo Gene Editing for Transthyretin Amyloidosis.
Julian D Gillmore, Ed Gane, Jorg Taubel, Justin Kao, Marianna Fontana, Michael L Maitland, Jessica Seitzer, Daniel O'Connell, Kathryn R Walsh, Kristy Wood,[...]. N Engl J Med 2021
58
50

Clonally Related Forebrain Interneurons Disperse Broadly across Both Functional Areas and Structural Boundaries.
Christian Mayer, Xavier H Jaglin, Lucy V Cobbs, Rachel C Bandler, Carmen Streicher, Constance L Cepko, Simon Hippenmeyer, Gord Fishell. Neuron 2015
68
50

High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.
Hod Dana, Yi Sun, Boaz Mohar, Brad K Hulse, Aaron M Kerlin, Jeremy P Hasseman, Getahun Tsegaye, Arthur Tsang, Allan Wong, Ronak Patel,[...]. Nat Methods 2019
220
50

Lineage Tracing and Clonal Analysis in Developing Cerebral Cortex Using Mosaic Analysis with Double Markers (MADM).
Robert Beattie, Carmen Streicher, Nicole Amberg, Giselle Cheung, Ximena Contreras, Andi H Hansen, Simon Hippenmeyer. J Vis Exp 2020
8
50

Viral tools for neuroscience.
Alexander R Nectow, Eric J Nestler. Nat Rev Neurosci 2020
25
50

Viral-genetic tracing of the input-output organization of a central noradrenaline circuit.
Lindsay A Schwarz, Kazunari Miyamichi, Xiaojing J Gao, Kevin T Beier, Brandon Weissbourd, Katherine E DeLoach, Jing Ren, Sandy Ibanes, Robert C Malenka, Eric J Kremer,[...]. Nature 2015
324
50

Localization of a stable neural correlate of associative memory.
Leon G Reijmers, Brian L Perkins, Naoki Matsuo, Mark Mayford. Science 2007
418
50

[A case of corneal limbal dermoid].
K Tanaka. Nihon Ganka Kiyo 1972
2
50

CAV-2--why a canine virus is a neurobiologist's best friend.
Felix Junyent, Eric J Kremer. Curr Opin Pharmacol 2015
71
50

Genome-wide synthetic lethal CRISPR screen identifies FIS1 as a genetic interactor of ALS-linked C9ORF72.
Noori Chai, Michael S Haney, Julien Couthouis, David W Morgens, Alyssa Benjamin, Kathryn Wu, James Ousey, Shirleen Fang, Sarah Finer, Michael C Bassik,[...]. Brain Res 2020
10
50

Temporally precise single-cell-resolution optogenetics.
Or A Shemesh, Dimitrii Tanese, Valeria Zampini, Changyang Linghu, Kiryl Piatkevich, Emiliano Ronzitti, Eirini Papagiakoumou, Edward S Boyden, Valentina Emiliani. Nat Neurosci 2017
80
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.