A citation-based method for searching scientific literature

Hanshuang Li, Mingmin Song, Wuritu Yang, Pengbo Cao, Lei Zheng, Yongchun Zuo. Mol Ther Nucleic Acids 2020
Times Cited: 8







List of co-cited articles
38 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Identification of key factors conquering developmental arrest of somatic cell cloned embryos by combining embryo biopsy and single-cell sequencing.
Wenqiang Liu, Xiaoyu Liu, Chenfei Wang, Yawei Gao, Rui Gao, Xiaochen Kou, Yanhong Zhao, Jingyi Li, You Wu, Wenchao Xiu,[...]. Cell Discov 2016
100
50

Inhibition of Aberrant DNA Re-methylation Improves Post-implantation Development of Somatic Cell Nuclear Transfer Embryos.
Rui Gao, Chenfei Wang, Yawei Gao, Wenchao Xiu, Jiayu Chen, Xiaochen Kou, Yanhong Zhao, Yuhan Liao, Dandan Bai, Zhibin Qiao,[...]. Cell Stem Cell 2018
34
37

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads.
Mihaela Pertea, Geo M Pertea, Corina M Antonescu, Tsung-Cheng Chang, Joshua T Mendell, Steven L Salzberg. Nat Biotechnol 2015
37

Embryonic development following somatic cell nuclear transfer impeded by persisting histone methylation.
Shogo Matoba, Yuting Liu, Falong Lu, Kumiko A Iwabuchi, Li Shen, Azusa Inoue, Yi Zhang. Cell 2014
228
37

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown.
Mihaela Pertea, Daehwan Kim, Geo M Pertea, Jeffrey T Leek, Steven L Salzberg. Nat Protoc 2016
37

Loss of H3K27me3 Imprinting in Somatic Cell Nuclear Transfer Embryos Disrupts Post-Implantation Development.
Shogo Matoba, Huihan Wang, Lan Jiang, Falong Lu, Kumiko A Iwabuchi, Xiaoji Wu, Kimiko Inoue, Lin Yang, William Press, Jeannie T Lee,[...]. Cell Stem Cell 2018
56
37


The spatial binding model of the pioneer factor Oct4 with its target genes during cell reprogramming.
Hanshuang Li, Na Ta, Chunshen Long, Qiutang Zhang, Siyu Li, Shuai Liu, Lei Yang, Yongchun Zuo. Comput Struct Biotechnol J 2019
10
37

Transcriptional defects and reprogramming barriers in somatic cell nuclear reprogramming as revealed by single-embryo RNA sequencing.
Yong Liu, Fengrui Wu, Ling Zhang, Xiaoqing Wu, Dengkun Li, Jing Xin, Juan Xie, Feng Kong, Wenying Wang, Qiaoqin Wu,[...]. BMC Genomics 2018
13
37

Dppa2/4 Facilitate Epigenetic Remodeling during Reprogramming to Pluripotency.
Charles Hernandez, Zheng Wang, Bulat Ramazanov, Yin Tang, Sameet Mehta, Cheryl Dambrot, Yu-Wei Lee, Kaleab Tessema, Ishan Kumar, Michael Astudillo,[...]. Cell Stem Cell 2018
33
25



Exploring timing activation of functional pathway based on differential co-expression analysis in preimplantation embryogenesis.
Yongchun Zuo, Guanghua Su, Shanshan Wang, Lei Yang, Mingzhi Liao, Zhuying Wei, Chunling Bai, Guangpeng Li. Oncotarget 2016
18
25

Hierarchical Oct4 Binding in Concert with Primed Epigenetic Rearrangements during Somatic Cell Reprogramming.
Jun Chen, Xiaolong Chen, Min Li, Xiaoyu Liu, Yawei Gao, Xiaochen Kou, Yanhong Zhao, Weisheng Zheng, Xiaobai Zhang, Yi Huo,[...]. Cell Rep 2016
40
25

Viable offspring derived from fetal and adult mammalian cells.
I Wilmut, A E Schnieke, J McWhir, A J Kind, K H Campbell. Nature 1997
25


Cloning of Macaque Monkeys by Somatic Cell Nuclear Transfer.
Zhen Liu, Yijun Cai, Yan Wang, Yanhong Nie, Chenchen Zhang, Yuting Xu, Xiaotong Zhang, Yong Lu, Zhanyang Wang, Muming Poo,[...]. Cell 2018
103
25

Coexpression analysis identifies nuclear reprogramming barriers of somatic cell nuclear transfer embryos.
Yongchun Zuo, Guanghua Su, Lei Cheng, Kun Liu, Yu Feng, Zhuying Wei, Chunling Bai, Guifang Cao, Guangpeng Li. Oncotarget 2017
13
25

Replacement of Oct4 by Tet1 during iPSC induction reveals an important role of DNA methylation and hydroxymethylation in reprogramming.
Yawei Gao, Jiayu Chen, Ke Li, Tong Wu, Bo Huang, Wenqiang Liu, Xiaochen Kou, Yu Zhang, Hua Huang, Yonghua Jiang,[...]. Cell Stem Cell 2013
232
25

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
25

Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming.
Geoffrey Schiebinger, Jian Shu, Marcin Tabaka, Brian Cleary, Vidya Subramanian, Aryeh Solomon, Joshua Gould, Siyan Liu, Stacie Lin, Peter Berube,[...]. Cell 2019
106
25

Reprogramming of H3K9me3-dependent heterochromatin during mammalian embryo development.
Chenfei Wang, Xiaoyu Liu, Yawei Gao, Lei Yang, Chong Li, Wenqiang Liu, Chuan Chen, Xiaochen Kou, Yanhong Zhao, Jiayu Chen,[...]. Nat Cell Biol 2018
121
25

Identification of ALPPL2 as a Naive Pluripotent State-Specific Surface Protein Essential for Human Naive Pluripotency Regulation.
Yan Bi, Zhifen Tu, Yanping Zhang, Peng Yang, Mingyue Guo, Xuehao Zhu, Chengchen Zhao, Jianfeng Zhou, Hong Wang, Yixuan Wang,[...]. Cell Rep 2020
8
25

Epigenetic priming by Dppa2 and 4 in pluripotency facilitates multi-lineage commitment.
Mélanie A Eckersley-Maslin, Aled Parry, Marloes Blotenburg, Christel Krueger, Yoko Ito, Valar Nila Roamio Franklin, Masashi Narita, Clive S D'Santos, Wolf Reik. Nat Struct Mol Biol 2020
12
25

Dppa2 and Dppa4 directly regulate the Dux-driven zygotic transcriptional program.
Mélanie Eckersley-Maslin, Celia Alda-Catalinas, Marloes Blotenburg, Elisa Kreibich, Christel Krueger, Wolf Reik. Genes Dev 2019
66
25


Cooperative Binding of Transcription Factors Orchestrates Reprogramming.
Constantinos Chronis, Petko Fiziev, Bernadett Papp, Stefan Butz, Giancarlo Bonora, Shan Sabri, Jason Ernst, Kathrin Plath. Cell 2017
226
25

H3K9 demethylase KDM4E is an epigenetic regulator for bovine embryonic development and a defective factor for nuclear reprogramming.
Xin Liu, Yizhi Wang, Yuanpeng Gao, Jianmin Su, Jingcheng Zhang, Xupeng Xing, Chuan Zhou, Kezhen Yao, Quanli An, Yong Zhang. Development 2018
55
25

Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing.
Zhigang Xue, Kevin Huang, Chaochao Cai, Lingbo Cai, Chun-yan Jiang, Yun Feng, Zhenshan Liu, Qiao Zeng, Liming Cheng, Yi E Sun,[...]. Nature 2013
539
25

KEGG as a reference resource for gene and protein annotation.
Minoru Kanehisa, Yoko Sato, Masayuki Kawashima, Miho Furumichi, Mao Tanabe. Nucleic Acids Res 2016
25


Transcriptional memory inherited from donor cells is a developmental defect of bovine cloned embryos.
Chuan Zhou, Jingcheng Zhang, Min Zhang, Debao Wang, Yi Ma, Yong Wang, Yizhi Wang, Yuemeng Huang, Yong Zhang. FASEB J 2020
13
25

Birth of piglets derived from porcine zygotes cultured in a chemically defined medium.
Koji Yoshioka, Chie Suzuki, Atsushi Tanaka, Idris M-K Anas, Shokichi Iwamura. Biol Reprod 2002
463
25

Epigenetic Reprogramming During Somatic Cell Nuclear Transfer: Recent Progress and Future Directions.
Xiangyu Wang, Jiadan Qu, Jie Li, Hongbin He, Zhonghua Liu, Yanjun Huan. Front Genet 2020
14
25


Chaetocin Improves Pig Cloning Efficiency by Enhancing Epigenetic Reprogramming and Autophagic Activity.
Pil-Soo Jeong, Bo-Woong Sim, Soo-Hyun Park, Min Ju Kim, Hyo-Gu Kang, Tsevelmaa Nanjidsuren, Sanghoon Lee, Bong-Seok Song, Deog-Bon Koo, Sun-Uk Kim. Int J Mol Sci 2020
10
25

Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
25

Somatic cell nuclear transfer: failures, successes and the challenges ahead.
Marta Czernik, Debora A Anzalone, Luca Palazzese, Mami Oikawa, Pasqualino Loi. Int J Dev Biol 2019
19
25

Identification of tumor immune infiltration-associated lncRNAs for improving prognosis and immunotherapy response of patients with non-small cell lung cancer.
Jie Sun, Zicheng Zhang, Siqi Bao, Congcong Yan, Ping Hou, Nan Wu, Jianzhong Su, Liangde Xu, Meng Zhou. J Immunother Cancer 2020
87
12

Pig cloning by microinjection of fetal fibroblast nuclei.
A Onishi, M Iwamoto, T Akita, S Mikawa, K Takeda, T Awata, H Hanada, A C Perry. Science 2000
587
12


DNA demethylation pattern of in-vitro fertilized and cloned porcine pronuclear stage embryos.
Xiaowei Nie, Qiang Liu, Ronggen Wang, Wenjie Sheng, Xiaokang Li, Manling Zhang, Yong Jin, Lihua Zhao, Daorong Hou, Ning Yang,[...]. Clin Chim Acta 2017
3
33

Reprogramming mammalian somatic cells.
N Rodriguez-Osorio, R Urrego, J B Cibelli, K Eilertsen, E Memili. Theriogenology 2012
65
12

Gadd45a promotes DNA demethylation through TDG.
Zheng Li, Tian-Peng Gu, Alain R Weber, Jia-Zhen Shen, Bin-Zhong Li, Zhi-Guo Xie, Ruichuan Yin, Fan Guo, Xiaomeng Liu, Fuchou Tang,[...]. Nucleic Acids Res 2015
52
12

Human imprinting disorders: Principles, practice, problems and progress.
Deborah J G Mackay, I Karen Temple. Eur J Med Genet 2017
22
12

Active and passive demethylation of male and female pronuclear DNA in the mammalian zygote.
Fan Guo, Xianlong Li, Dan Liang, Tong Li, Ping Zhu, Hongshan Guo, Xinglong Wu, Lu Wen, Tian-Peng Gu, Boqiang Hu,[...]. Cell Stem Cell 2014
209
12

Specific gene-regulation networks during the pre-implantation development of the pig embryo as revealed by deep sequencing.
Suying Cao, Jianyong Han, Jun Wu, Qiuyan Li, Shichao Liu, Wei Zhang, Yangli Pei, Xiaoan Ruan, Zhonghua Liu, Xumin Wang,[...]. BMC Genomics 2014
87
12

YY1 in Cell Differentiation and Tissue Development.
Fengyuan Chen, Hao Sun, Yu Zhao, Huating Wang. Crit Rev Oncog 2017
17
12

DNA-binding mechanism of the Hippo pathway transcription factor TEAD4.
Z Shi, F He, M Chen, L Hua, W Wang, S Jiao, Z Zhou. Oncogene 2017
33
12

EmExplorer: a database for exploring time activation of gene expression in mammalian embryos.
Bosu Hu, Lei Zheng, Chunshen Long, Mingmin Song, Tao Li, Lei Yang, Yongchun Zuo. Open Biol 2019
20
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.