A citation-based method for searching scientific literature

Alyssa Kallman, Elizabeth E Capowski, Jie Wang, Aniruddha M Kaushik, Alex D Jansen, Kimberly L Edwards, Liben Chen, Cynthia A Berlinicke, M Joseph Phillips, Eric A Pierce, Jiang Qian, Tza-Huei Wang, David M Gamm, Donald J Zack. Commun Biol 2020
Times Cited: 26







List of co-cited articles
386 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Generation of three-dimensional retinal tissue with functional photoreceptors from human iPSCs.
Xiufeng Zhong, Christian Gutierrez, Tian Xue, Christopher Hampton, M Natalia Vergara, Li-Hui Cao, Ann Peters, Tea Soon Park, Elias T Zambidis, Jason S Meyer,[...]. Nat Commun 2014
427
69

Self-formation of optic cups and storable stratified neural retina from human ESCs.
Tokushige Nakano, Satoshi Ando, Nozomu Takata, Masako Kawada, Keiko Muguruma, Kiyotoshi Sekiguchi, Koichi Saito, Shigenobu Yonemura, Mototsugu Eiraku, Yoshiki Sasai. Cell Stem Cell 2012
756
61

Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution.
Cameron S Cowan, Magdalena Renner, Martina De Gennaro, Brigitte Gross-Scherf, David Goldblum, Yanyan Hou, Martin Munz, Tiago M Rodrigues, Jacek Krol, Tamas Szikra,[...]. Cell 2020
73
57

Reproducibility and staging of 3D human retinal organoids across multiple pluripotent stem cell lines.
Elizabeth E Capowski, Kayvan Samimi, Steven J Mayerl, M Joseph Phillips, Isabel Pinilla, Sara E Howden, Jishnu Saha, Alex D Jansen, Kimberly L Edwards, Lindsey D Jager,[...]. Development 2019
75
53

Single-Cell Transcriptomic Comparison of Human Fetal Retina, hPSC-Derived Retinal Organoids, and Long-Term Retinal Cultures.
Akshayalakshmi Sridhar, Akina Hoshino, Connor R Finkbeiner, Alex Chitsazan, Li Dai, Alexandra K Haugan, Kayla M Eschenbacher, Dana L Jackson, Cole Trapnell, Olivia Bermingham-McDonogh,[...]. Cell Rep 2020
53
53

Generation, transcriptome profiling, and functional validation of cone-rich human retinal organoids.
Sangbae Kim, Albert Lowe, Rachayata Dharmat, Seunghoon Lee, Leah A Owen, Jun Wang, Akbar Shakoor, Yumei Li, Denise J Morgan, Andre A Hejazi,[...]. Proc Natl Acad Sci U S A 2019
53
53

Modeling early retinal development with human embryonic and induced pluripotent stem cells.
Jason S Meyer, Rebecca L Shearer, Elizabeth E Capowski, Lynda S Wright, Kyle A Wallace, Erin L McMillan, Su-Chun Zhang, David M Gamm. Proc Natl Acad Sci U S A 2009
391
50

Gene Correction Reverses Ciliopathy and Photoreceptor Loss in iPSC-Derived Retinal Organoids from Retinitis Pigmentosa Patients.
Wen-Li Deng, Mei-Ling Gao, Xin-Lan Lei, Ji-Neng Lv, Huan Zhao, Kai-Wen He, Xi-Xi Xia, Ling-Yun Li, Yu-Chen Chen, Yan-Ping Li,[...]. Stem Cell Reports 2018
94
50

Self-organizing optic-cup morphogenesis in three-dimensional culture.
Mototsugu Eiraku, Nozomu Takata, Hiroki Ishibashi, Masako Kawada, Eriko Sakakura, Satoru Okuda, Kiyotoshi Sekiguchi, Taiji Adachi, Yoshiki Sasai. Nature 2011
50

Modeling and Rescue of RP2 Retinitis Pigmentosa Using iPSC-Derived Retinal Organoids.
Amelia Lane, Katarina Jovanovic, Ciara Shortall, Daniele Ottaviani, Anna Brugulat Panes, Nele Schwarz, Rosellina Guarascio, Matthew J Hayes, Arpad Palfi, Naomi Chadderton,[...]. Stem Cell Reports 2020
41
50

Optic vesicle-like structures derived from human pluripotent stem cells facilitate a customized approach to retinal disease treatment.
Jason S Meyer, Sara E Howden, Kyle A Wallace, Amelia D Verhoeven, Lynda S Wright, Elizabeth E Capowski, Isabel Pinilla, Jessica M Martin, Shulan Tian, Ron Stewart,[...]. Stem Cells 2011
275
46

Merging organoid and organ-on-a-chip technology to generate complex multi-layer tissue models in a human retina-on-a-chip platform.
Kevin Achberger, Christopher Probst, Jasmin Haderspeck, Sylvia Bolz, Julia Rogal, Johanna Chuchuy, Marina Nikolova, Virginia Cora, Lena Antkowiak, Wadood Haq,[...]. Elife 2019
102
46

Thyroid hormone signaling specifies cone subtypes in human retinal organoids.
Kiara C Eldred, Sarah E Hadyniak, Katarzyna A Hussey, Boris Brenerman, Ping-Wu Zhang, Xitiz Chamling, Valentin M Sluch, Derek S Welsbie, Samer Hattar, James Taylor,[...]. Science 2018
80
46

Morphological and Molecular Defects in Human Three-Dimensional Retinal Organoid Model of X-Linked Juvenile Retinoschisis.
Kang-Chieh Huang, Mong-Lien Wang, Shih-Jen Chen, Jean-Cheng Kuo, Won-Jing Wang, Phan Nguyen Nhi Nguyen, Karl J Wahlin, Jyh-Feng Lu, Audrey A Tran, Michael Shi,[...]. Stem Cell Reports 2019
30
46

Human-Induced Pluripotent Stem Cells Generate Light Responsive Retinal Organoids with Variable and Nutrient-Dependent Efficiency.
Dean Hallam, Gerrit Hilgen, Birthe Dorgau, Lili Zhu, Min Yu, Sanja Bojic, Philip Hewitt, Michael Schmitt, Marianne Uteng, Stefan Kustermann,[...]. Stem Cells 2018
75
38

Photoreceptor Outer Segment-like Structures in Long-Term 3D Retinas from Human Pluripotent Stem Cells.
Karl J Wahlin, Julien A Maruotti, Srinivasa R Sripathi, John Ball, Juan M Angueyra, Catherine Kim, Rhonda Grebe, Wei Li, Bryan W Jones, Donald J Zack. Sci Rep 2017
105
38

Deconstructing Retinal Organoids: Single Cell RNA-Seq Reveals the Cellular Components of Human Pluripotent Stem Cell-Derived Retina.
Joseph Collin, Rachel Queen, Darin Zerti, Birthe Dorgau, Rafiqul Hussain, Jonathan Coxhead, Simon Cockell, Majlinda Lako. Stem Cells 2019
43
38

Patient-specific induced pluripotent stem cells to evaluate the pathophysiology of TRNT1-associated Retinitis pigmentosa.
Tasneem P Sharma, Luke A Wiley, S Scott Whitmore, Kristin R Anfinson, Cathryn M Cranston, Douglas J Oppedal, Heather T Daggett, Robert F Mullins, Budd A Tucker, Edwin M Stone. Stem Cell Res 2017
34
34

Recapitulation of Human Retinal Development from Human Pluripotent Stem Cells Generates Transplantable Populations of Cone Photoreceptors.
Anai Gonzalez-Cordero, Kamil Kruczek, Arifa Naeem, Milan Fernando, Magdalena Kloc, Joana Ribeiro, Debbie Goh, Yanai Duran, Samuel J I Blackford, Laura Abelleira-Hervas,[...]. Stem Cell Reports 2017
97
34

Patient-Specific Retinal Organoids Recapitulate Disease Features of Late-Onset Retinitis Pigmentosa.
Mei-Ling Gao, Xin-Lan Lei, Fang Han, Kai-Wen He, Si-Qian Jin, You-You Zhang, Zi-Bing Jin. Front Cell Dev Biol 2020
24
37

From confluent human iPS cells to self-forming neural retina and retinal pigmented epithelium.
Sacha Reichman, Angélique Terray, Amélie Slembrouck, Céline Nanteau, Gaël Orieux, Walter Habeler, Emeline F Nandrot, José-Alain Sahel, Christelle Monville, Olivier Goureau. Proc Natl Acad Sci U S A 2014
152
34

Identification and Correction of Mechanisms Underlying Inherited Blindness in Human iPSC-Derived Optic Cups.
David A Parfitt, Amelia Lane, Conor M Ramsden, Amanda-Jayne F Carr, Peter M Munro, Katarina Jovanovic, Nele Schwarz, Naheed Kanuga, Manickam N Muthiah, Sarah Hull,[...]. Cell Stem Cell 2016
170
34

Three-Dimensional Retinal Organoids Facilitate the Investigation of Retinal Ganglion Cell Development, Organization and Neurite Outgrowth from Human Pluripotent Stem Cells.
Clarisse M Fligor, Kirstin B Langer, Akshayalakshmi Sridhar, Yuan Ren, Priya K Shields, Michael C Edler, Sarah K Ohlemacher, Valentin M Sluch, Donald J Zack, Chi Zhang,[...]. Sci Rep 2018
63
34

CRX Expression in Pluripotent Stem Cell-Derived Photoreceptors Marks a Transplantable Subpopulation of Early Cones.
Joseph Collin, Darin Zerti, Rachel Queen, Tiago Santos-Ferreira, Roman Bauer, Jonathan Coxhead, Rafiqul Hussain, David Steel, Carla Mellough, Marius Ader,[...]. Stem Cells 2019
27
30

Isolation and Comparative Transcriptome Analysis of Human Fetal and iPSC-Derived Cone Photoreceptor Cells.
Emily Welby, Jorn Lakowski, Valentina Di Foggia, Dimitri Budinger, Anai Gonzalez-Cordero, Aaron T L Lun, Michael Epstein, Aara Patel, Elisa Cuevas, Kamil Kruczek,[...]. Stem Cell Reports 2017
52
30

Disrupted alternative splicing for genes implicated in splicing and ciliogenesis causes PRPF31 retinitis pigmentosa.
Adriana Buskin, Lili Zhu, Valeria Chichagova, Basudha Basu, Sina Mozaffari-Jovin, David Dolan, Alastair Droop, Joseph Collin, Revital Bronstein, Sudeep Mehrotra,[...]. Nat Commun 2018
72
30

Induction of pluripotent stem cells from adult human fibroblasts by defined factors.
Kazutoshi Takahashi, Koji Tanabe, Mari Ohnuki, Megumi Narita, Tomoko Ichisaka, Kiichiro Tomoda, Shinya Yamanaka. Cell 2007
30

Characterization and Transplantation of CD73-Positive Photoreceptors Isolated from Human iPSC-Derived Retinal Organoids.
Giuliana Gagliardi, Karim Ben M'Barek, Antoine Chaffiol, Amélie Slembrouck-Brec, Jean-Baptiste Conart, Céline Nanteau, Oriane Rabesandratana, José-Alain Sahel, Jens Duebel, Gael Orieux,[...]. Stem Cell Reports 2018
61
30

Generation of Storable Retinal Organoids and Retinal Pigmented Epithelium from Adherent Human iPS Cells in Xeno-Free and Feeder-Free Conditions.
Sacha Reichman, Amélie Slembrouck, Giuliana Gagliardi, Antoine Chaffiol, Angélique Terray, Céline Nanteau, Anais Potey, Morgane Belle, Oriane Rabesandratana, Jens Duebel,[...]. Stem Cells 2017
99
30

Modeling Retinitis Pigmentosa: Retinal Organoids Generated From the iPSCs of a Patient With the USH2A Mutation Show Early Developmental Abnormalities.
Yonglong Guo, Peiyuan Wang, Jacey Hongjie Ma, Zekai Cui, Quan Yu, Shiwei Liu, Yunxia Xue, Deliang Zhu, Jixing Cao, Zhijie Li,[...]. Front Cell Neurosci 2019
23
34


IGF-1 Signaling Plays an Important Role in the Formation of Three-Dimensional Laminated Neural Retina and Other Ocular Structures From Human Embryonic Stem Cells.
Carla B Mellough, Joseph Collin, Mahmoud Khazim, Kathryn White, Evelyne Sernagor, David H W Steel, Majlinda Lako. Stem Cells 2015
76
30

cGMP production of patient-specific iPSCs and photoreceptor precursor cells to treat retinal degenerative blindness.
Luke A Wiley, Erin R Burnight, Adam P DeLuca, Kristin R Anfinson, Cathryn M Cranston, Emily E Kaalberg, Jessica A Penticoff, Louisa M Affatigato, Robert F Mullins, Edwin M Stone,[...]. Sci Rep 2016
68
26

Retinal Organoids derived from hiPSCs of an AIPL1-LCA Patient Maintain Cytoarchitecture despite Reduced levels of Mutant AIPL1.
Dunja Lukovic, Ana Artero Castro, Koray Dogan Kaya, Daniella Munezero, Linn Gieser, Carlota Davó-Martínez, Marta Corton, Nicolás Cuenca, Anand Swaroop, Visvanathan Ramamurthy,[...]. Sci Rep 2020
14
50

Single-Cell Analysis of Human Retina Identifies Evolutionarily Conserved and Species-Specific Mechanisms Controlling Development.
Yufeng Lu, Fion Shiau, Wenyang Yi, Suying Lu, Qian Wu, Joel D Pearson, Alyssa Kallman, Suijuan Zhong, Thanh Hoang, Zhentao Zuo,[...]. Dev Cell 2020
42
26

Transcriptome-based molecular staging of human stem cell-derived retinal organoids uncovers accelerated photoreceptor differentiation by 9-cis retinal.
Koray D Kaya, Holly Y Chen, Matthew J Brooks, Ryan A Kelley, Hiroko Shimada, Kunio Nagashima, Natalia de Val, Charles T Drinnan, Linn Gieser, Kamil Kruczek,[...]. Mol Vis 2019
27
26

A Cleared View on Retinal Organoids.
Virginia Cora, Jasmin Haderspeck, Lena Antkowiak, Ulrich Mattheus, Peter H Neckel, Andreas F Mack, Sylvia Bolz, Marius Ueffing, Natalia Pashkovskaia, Kevin Achberger,[...]. Cells 2019
20
35

Use of bioreactors for culturing human retinal organoids improves photoreceptor yields.
Patrick Ovando-Roche, Emma L West, Matthew J Branch, Robert D Sampson, Milan Fernando, Peter Munro, Anastasios Georgiadis, Matteo Rizzi, Magdalena Kloc, Arifa Naeem,[...]. Stem Cell Res Ther 2018
43
26

Generation of a ciliary margin-like stem cell niche from self-organizing human retinal tissue.
Atsushi Kuwahara, Chikafumi Ozone, Tokushige Nakano, Koichi Saito, Mototsugu Eiraku, Yoshiki Sasai. Nat Commun 2015
144
26

Retinal Ganglion Cells With a Glaucoma OPTN(E50K) Mutation Exhibit Neurodegenerative Phenotypes when Derived from Three-Dimensional Retinal Organoids.
Kirstin B VanderWall, Kang-Chieh Huang, Yanling Pan, Sailee S Lavekar, Clarisse M Fligor, Anna R Allsop, Kelly A Lentsch, Pengtao Dang, Chi Zhang, Henry C Tseng,[...]. Stem Cell Reports 2020
18
38

Transcriptome Dynamics of Developing Photoreceptors in Three-Dimensional Retina Cultures Recapitulates Temporal Sequence of Human Cone and Rod Differentiation Revealing Cell Surface Markers and Gene Networks.
Rossukon Kaewkhaw, Koray Dogan Kaya, Matthew Brooks, Kohei Homma, Jizhong Zou, Vijender Chaitankar, Mahendra Rao, Anand Swaroop. Stem Cells 2015
93
26

Efficient generation of retinal progenitor cells from human embryonic stem cells.
Deepak A Lamba, Mike O Karl, Carol B Ware, Thomas A Reh. Proc Natl Acad Sci U S A 2006
454
23

Transplanted hESC-Derived Retina Organoid Sheets Differentiate, Integrate, and Improve Visual Function in Retinal Degenerate Rats.
Bryce T McLelland, Bin Lin, Anuradha Mathur, Robert B Aramant, Biju B Thomas, Gabriel Nistor, Hans S Keirstead, Magdalene J Seiler. Invest Ophthalmol Vis Sci 2018
49
23

Transplantation of Human Embryonic Stem Cell-Derived Retinal Tissue in the Subretinal Space of the Cat Eye.
Ratnesh K Singh, Laurence M Occelli, Francois Binette, Simon M Petersen-Jones, Igor O Nasonkin. Stem Cells Dev 2019
19
31

Accelerated photoreceptor differentiation of hiPSC-derived retinal organoids by contact co-culture with retinal pigment epithelium.
Tasneem Akhtar, Haohuan Xie, Muhammad Imran Khan, Huan Zhao, Jin Bao, Mei Zhang, Tian Xue. Stem Cell Res 2019
25
24

Nrl is required for rod photoreceptor development.
A J Mears, M Kondo, P K Swain, Y Takada, R A Bush, T L Saunders, P A Sieving, A Swaroop. Nat Genet 2001
660
23

Modeling human retinal development with patient-specific induced pluripotent stem cells reveals multiple roles for visual system homeobox 2.
M Joseph Phillips, Enio T Perez, Jessica M Martin, Samantha T Reshel, Kyle A Wallace, Elizabeth E Capowski, Ruchira Singh, Lynda S Wright, Eric M Clark, Patrick M Barney,[...]. Stem Cells 2014
72
23

Detailed Phenotyping and Therapeutic Strategies for Intronic ABCA4 Variants in Stargardt Disease.
Mubeen Khan, Gavin Arno, Ana Fakin, David A Parfitt, Patty P A Dhooge, Silvia Albert, Nathalie M Bax, Lonneke Duijkers, Michael Niblock, Kwan L Hau,[...]. Mol Ther Nucleic Acids 2020
12
50

AAV-Mediated Gene Delivery to 3D Retinal Organoids Derived from Human Induced Pluripotent Stem Cells.
Marcela Garita-Hernandez, Fiona Routet, Laure Guibbal, Hanen Khabou, Lyes Toualbi, Luisa Riancho, Sacha Reichman, Jens Duebel, Jose-Alain Sahel, Olivier Goureau,[...]. Int J Mol Sci 2020
25
24

In Vitro Modeling Using Ciliopathy-Patient-Derived Cells Reveals Distinct Cilia Dysfunctions Caused by CEP290 Mutations.
Hiroko Shimada, Quanlong Lu, Christine Insinna-Kettenhofen, Kunio Nagashima, Milton A English, Elizabeth M Semler, Jacklyn Mahgerefteh, Artur V Cideciyan, Tiansen Li, Brian P Brooks,[...]. Cell Rep 2017
67
23


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.