A citation-based method for searching scientific literature

Xiaoshu Zhu, Jie Zhang, Yunpei Xu, Jianxin Wang, Xiaoqing Peng, Hong-Dong Li. Interdiscip Sci 2020
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


M3Drop: dropout-based feature selection for scRNASeq.
Tallulah S Andrews, Martin Hemberg. Bioinformatics 2019
77
100

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.
Cole Trapnell, Davide Cacchiarelli, Jonna Grimsby, Prapti Pokharel, Shuqiang Li, Michael Morse, Niall J Lennon, Kenneth J Livak, Tarjei S Mikkelsen, John L Rinn. Nat Biotechnol 2014
100

Integrative single-cell analysis.
Tim Stuart, Rahul Satija. Nat Rev Genet 2019
354
100

Single-cell RNA sequencing reveals molecular and functional platelet bias of aged haematopoietic stem cells.
Amit Grover, Alejandra Sanjuan-Pla, Supat Thongjuea, Joana Carrelha, Alice Giustacchini, Adriana Gambardella, Iain Macaulay, Elena Mancini, Tiago C Luis, Adam Mead,[...]. Nat Commun 2016
118
100

Challenges in unsupervised clustering of single-cell RNA-seq data.
Vladimir Yu Kiselev, Tallulah S Andrews, Martin Hemberg. Nat Rev Genet 2019
234
100


Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells.
Liying Yan, Mingyu Yang, Hongshan Guo, Lu Yang, Jun Wu, Rong Li, Ping Liu, Ying Lian, Xiaoying Zheng, Jie Yan,[...]. Nat Struct Mol Biol 2013
804
100

Impact of similarity metrics on single-cell RNA-seq data clustering.
Taiyun Kim, Irene Rui Chen, Yingxin Lin, Andy Yi-Yang Wang, Jean Yee Hwa Yang, Pengyi Yang. Brief Bioinform 2019
31
100

Dimensionality reduction for visualizing single-cell data using UMAP.
Etienne Becht, Leland McInnes, John Healy, Charles-Antoine Dutertre, Immanuel W H Kwok, Lai Guan Ng, Florent Ginhoux, Evan W Newell. Nat Biotechnol 2018
918
100

SC3: consensus clustering of single-cell RNA-seq data.
Vladimir Yu Kiselev, Kristina Kirschner, Michael T Schaub, Tallulah Andrews, Andrew Yiu, Tamir Chandra, Kedar N Natarajan, Wolf Reik, Mauricio Barahona, Anthony R Green,[...]. Nat Methods 2017
482
100

A Hybrid Clustering Algorithm for Identifying Cell Types from Single-Cell RNA-Seq Data.
Xiaoshu Zhu, Hong-Dong Li, Yunpei Xu, Lilu Guo, Fang-Xiang Wu, Guihua Duan, Jianxin Wang. Genes (Basel) 2019
5
100

Evaluation of tools for highly variable gene discovery from single-cell RNA-seq data.
Shun H Yip, Pak Chung Sham, Junwen Wang. Brief Bioinform 2019
39
100

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells.
Daniel Ramsköld, Shujun Luo, Yu-Chieh Wang, Robin Li, Qiaolin Deng, Omid R Faridani, Gregory A Daniels, Irina Khrebtukova, Jeanne F Loring, Louise C Laurent,[...]. Nat Biotechnol 2012
826
100

Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis.
Jacob H Levine, Erin F Simonds, Sean C Bendall, Kara L Davis, El-ad D Amir, Michelle D Tadmor, Oren Litvin, Harris G Fienberg, Astraea Jager, Eli R Zunder,[...]. Cell 2015
712
100

Single-cell RNA sequencing identifies extracellular matrix gene expression by pancreatic circulating tumor cells.
David T Ting, Ben S Wittner, Matteo Ligorio, Nicole Vincent Jordan, Ajay M Shah, David T Miyamoto, Nicola Aceto, Francesca Bersani, Brian W Brannigan, Kristina Xega,[...]. Cell Rep 2014
270
100

Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells.
Qiaolin Deng, Daniel Ramsköld, Björn Reinius, Rickard Sandberg. Science 2014
605
100


A Gene Rank Based Approach for Single Cell Similarity Assessment and Clustering.
Yunpei Xu, Hong-Dong Li, Yi Pan, Feng Luo, Fang-Xiang Wu, Jianxin Wang. IEEE/ACM Trans Comput Biol Bioinform 2021
5
100

Sequencing thousands of single-cell genomes with combinatorial indexing.
Sarah A Vitak, Kristof A Torkenczy, Jimi L Rosenkrantz, Andrew J Fields, Lena Christiansen, Melissa H Wong, Lucia Carbone, Frank J Steemers, Andrew Adey. Nat Methods 2017
121
100




Identification of key factors conquering developmental arrest of somatic cell cloned embryos by combining embryo biopsy and single-cell sequencing.
Wenqiang Liu, Xiaoyu Liu, Chenfei Wang, Yawei Gao, Rui Gao, Xiaochen Kou, Yanhong Zhao, Jingyi Li, You Wu, Wenchao Xiu,[...]. Cell Discov 2016
100
100

SAME-clustering: Single-cell Aggregated Clustering via Mixture Model Ensemble.
Ruth Huh, Yuchen Yang, Yuchao Jiang, Yin Shen, Yun Li. Nucleic Acids Res 2020
14
100

Single-cell messenger RNA sequencing reveals rare intestinal cell types.
Dominic Grün, Anna Lyubimova, Lennart Kester, Kay Wiebrands, Onur Basak, Nobuo Sasaki, Hans Clevers, Alexander van Oudenaarden. Nature 2015
592
100

SAFE-clustering: Single-cell Aggregated (from Ensemble) clustering for single-cell RNA-seq data.
Yuchen Yang, Ruth Huh, Houston W Culpepper, Yuan Lin, Michael I Love, Yun Li. Bioinformatics 2019
33
100

Evaluation of stability of k-means cluster ensembles with respect to random initialization.
Ludmila I Kuncheva, Dmitry P Vetrov. IEEE Trans Pattern Anal Mach Intell 2006
34
100

Heterogeneity in Oct4 and Sox2 Targets Biases Cell Fate in 4-Cell Mouse Embryos.
Mubeen Goolam, Antonio Scialdone, Sarah J L Graham, Iain C Macaulay, Agnieszka Jedrusik, Anna Hupalowska, Thierry Voet, John C Marioni, Magdalena Zernicka-Goetz. Cell 2016
183
100

Clustering and classification methods for single-cell RNA-sequencing data.
Ren Qi, Anjun Ma, Qin Ma, Quan Zou. Brief Bioinform 2020
30
100

Normalized mutual information feature selection.
Pablo A Estévez, Michel Tesmer, Claudio A Perez, Jacek M Zurada. IEEE Trans Neural Netw 2009
78
100

Single-Cell Alternative Splicing Analysis with Expedition Reveals Splicing Dynamics during Neuron Differentiation.
Yan Song, Olga B Botvinnik, Michael T Lovci, Boyko Kakaradov, Patrick Liu, Jia L Xu, Gene W Yeo. Mol Cell 2017
71
100

Network enhancement as a general method to denoise weighted biological networks.
Bo Wang, Armin Pourshafeie, Marinka Zitnik, Junjie Zhu, Carlos D Bustamante, Serafim Batzoglou, Jure Leskovec. Nat Commun 2018
23
100

A survey of human brain transcriptome diversity at the single cell level.
Spyros Darmanis, Steven A Sloan, Ye Zhang, Martin Enge, Christine Caneda, Lawrence M Shuer, Melanie G Hayden Gephart, Ben A Barres, Stephen R Quake. Proc Natl Acad Sci U S A 2015
571
100

Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex.
Alex A Pollen, Tomasz J Nowakowski, Joe Shuga, Xiaohui Wang, Anne A Leyrat, Jan H Lui, Nianzhen Li, Lukasz Szpankowski, Brian Fowler, Peilin Chen,[...]. Nat Biotechnol 2014
474
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.