A citation-based method for searching scientific literature

Melissa R McGuirl, Alexandria Volkening, Björn Sandstede. Proc Natl Acad Sci U S A 2020
Times Cited: 18







List of co-cited articles
53 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A roadmap for the computation of persistent homology.
Nina Otter, Mason A Porter, Ulrike Tillmann, Peter Grindrod, Heather A Harrington. EPJ Data Sci 2017
56
33

Topological data analysis of biological aggregation models.
Chad M Topaz, Lori Ziegelmeier, Tom Halverson. PLoS One 2015
28
33

Analyzing collective motion with machine learning and topology.
Dhananjay Bhaskar, Angelika Manhart, Jesse Milzman, John T Nardini, Kathleen M Storey, Chad M Topaz, Lori Ziegelmeier. Chaos 2019
7
57

Persistent Homology Analysis of Brain Artery Trees.
Paul Bendich, J S Marron, Ezra Miller, Alex Pieloch, Sean Skwerer. Ann Appl Stat 2016
30
22

Hierarchical structures of amorphous solids characterized by persistent homology.
Yasuaki Hiraoka, Takenobu Nakamura, Akihiko Hirata, Emerson G Escolar, Kaname Matsue, Yasumasa Nishiura. Proc Natl Acad Sci U S A 2016
45
16

A topological approach to selecting models of biological experiments.
M Ulmer, Lori Ziegelmeier, Chad M Topaz. PLoS One 2019
10
30


Novel type of phase transition in a system of self-driven particles.
Vicsek, Czirók, Ben-Jacob, Cohen, Shochet. Phys Rev Lett 1995
16

Single-cell topological RNA-seq analysis reveals insights into cellular differentiation and development.
Abbas H Rizvi, Pablo G Camara, Elena K Kandror, Thomas J Roberts, Ira Schieren, Tom Maniatis, Raul Rabadan. Nat Biotechnol 2017
93
16

Persistent homology analysis of protein structure, flexibility, and folding.
Kelin Xia, Guo-Wei Wei. Int J Numer Method Biomed Eng 2014
76
16


Using persistent homology and dynamical distances to analyze protein binding.
Violeta Kovacev-Nikolic, Peter Bubenik, Dragan Nikolić, Giseon Heo. Stat Appl Genet Mol Biol 2016
19
16

Topography of cancer-associated immune cells in human solid tumors.
Jakob Nikolas Kather, Meggy Suarez-Carmona, Pornpimol Charoentong, Cleo-Aron Weis, Daniela Hirsch, Peter Bankhead, Marcel Horning, Dyke Ferber, Ivan Kel, Esther Herpel,[...]. Elife 2018
110
11

Precision immunoprofiling by image analysis and artificial intelligence.
Viktor H Koelzer, Korsuk Sirinukunwattana, Jens Rittscher, Kirsten D Mertz. Virchows Arch 2019
53
11

Type, density, and location of immune cells within human colorectal tumors predict clinical outcome.
Jérôme Galon, Anne Costes, Fatima Sanchez-Cabo, Amos Kirilovsky, Bernhard Mlecnik, Christine Lagorce-Pagès, Marie Tosolini, Matthieu Camus, Anne Berger, Philippe Wind,[...]. Science 2006
11

Interplay of RhoA and mechanical forces in collective cell migration driven by leader cells.
M Reffay, M C Parrini, O Cochet-Escartin, B Ladoux, A Buguin, S Coscoy, F Amblard, J Camonis, P Silberzan. Nat Cell Biol 2014
213
11

Collective motion of cells: from experiments to models.
Előd Méhes, Tamás Vicsek. Integr Biol (Camb) 2014
75
11

Mechanical interactions among followers determine the emergence of leaders in migrating epithelial cell collectives.
Medhavi Vishwakarma, Jacopo Di Russo, Dimitri Probst, Ulrich S Schwarz, Tamal Das, Joachim P Spatz. Nat Commun 2018
61
11

Collective and individual migration following the epithelial-mesenchymal transition.
Ian Y Wong, Sarah Javaid, Elisabeth A Wong, Sinem Perk, Daniel A Haber, Mehmet Toner, Daniel Irimia. Nat Mater 2014
110
11

Emergent structures and dynamics of cell colonies by contact inhibition of locomotion.
Bart Smeets, Ricard Alert, Jiří Pešek, Ignacio Pagonabarraga, Herman Ramon, Romaric Vincent. Proc Natl Acad Sci U S A 2016
35
11

Modelling stripe formation in zebrafish: an agent-based approach.
Alexandria Volkening, Björn Sandstede. J R Soc Interface 2015
29
11


Collective cell migration in morphogenesis, regeneration and cancer.
Peter Friedl, Darren Gilmour. Nat Rev Mol Cell Biol 2009
11

Connecting individual to collective cell migration.
Mishel George, Francesco Bullo, Otger Campàs. Sci Rep 2017
15
13

Physical models of collective cell motility: from cell to tissue.
Brian A Camley, Wouter-Jan Rappel. J Phys D Appl Phys 2017
59
11

Zebrafish stripes as a model for vertebrate colour pattern formation.
Ajeet Pratap Singh, Christiane Nüsslein-Volhard. Curr Biol 2015
96
11

Glass-like dynamics of collective cell migration.
Thomas E Angelini, Edouard Hannezo, Xavier Trepat, Manuel Marquez, Jeffrey J Fredberg, David A Weitz. Proc Natl Acad Sci U S A 2011
313
11

Unjamming and cell shape in the asthmatic airway epithelium.
Jin-Ah Park, Jae Hun Kim, Dapeng Bi, Jennifer A Mitchel, Nader Taheri Qazvini, Kelan Tantisira, Chan Young Park, Maureen McGill, Sae-Hoon Kim, Bomi Gweon,[...]. Nat Mater 2015
215
11

Collective cell motion in an epithelial sheet can be quantitatively described by a stochastic interacting particle model.
Néstor Sepúlveda, Laurence Petitjean, Olivier Cochet, Erwan Grasland-Mongrain, Pascal Silberzan, Vincent Hakim. PLoS Comput Biol 2013
114
11

Motility-driven glass and jamming transitions in biological tissues.
Dapeng Bi, Xingbo Yang, M Cristina Marchetti, M Lisa Manning. Phys Rev X 2016
243
11

Collective motion of cells mediates segregation and pattern formation in co-cultures.
Elod Méhes, Enys Mones, Valéria Németh, Tamás Vicsek. PLoS One 2012
33
11

The Intersection of Theory and Application in Elucidating Pattern Formation in Developmental Biology.
Hans G Othmer, Kevin Painter, David Umulis, Chuan Xue. Math Model Nat Phenom 2009
29
11



Spatial dynamics of ecological public goods.
Joe Yuichiro Wakano, Martin A Nowak, Christoph Hauert. Proc Natl Acad Sci U S A 2009
97
11


Human NK cell repertoire diversity reflects immune experience and correlates with viral susceptibility.
Dara M Strauss-Albee, Julia Fukuyama, Emily C Liang, Yi Yao, Justin A Jarrell, Alison L Drake, John Kinuthia, Ruth R Montgomery, Grace John-Stewart, Susan Holmes,[...]. Sci Transl Med 2015
113
11

Cutting Edge: IL-12 inversely regulates T-bet and eomesodermin expression during pathogen-induced CD8+ T cell differentiation.
Naofumi Takemoto, Andrew M Intlekofer, John T Northrup, E John Wherry, Steven L Reiner. J Immunol 2006
253
11


Dynamic programming.
R Bellman. Science 1966
59
11

optimalFlow: optimal transport approach to flow cytometry gating and population matching.
Eustasio Del Barrio, Hristo Inouzhe, Jean-Michel Loubes, Carlos Matrán, Agustín Mayo-Íscar. BMC Bioinformatics 2020
2
100

Deep immune profiling of COVID-19 patients reveals distinct immunotypes with therapeutic implications.
Divij Mathew, Josephine R Giles, Amy E Baxter, Derek A Oldridge, Allison R Greenplate, Jennifer E Wu, Cécile Alanio, Leticia Kuri-Cervantes, M Betina Pampena, Kurt D'Andrea,[...]. Science 2020
702
11

Characterization of T-bet and eomes in peripheral human immune cells.
James J Knox, Gabriela L Cosma, Michael R Betts, Laura M McLane. Front Immunol 2014
138
11

Quantitative firing pattern phenotyping of hippocampal neuron types.
Alexander O Komendantov, Siva Venkadesh, Christopher L Rees, Diek W Wheeler, David J Hamilton, Giorgio A Ascoli. Sci Rep 2019
14
14

Mass Cytometry: Single Cells, Many Features.
Matthew H Spitzer, Garry P Nolan. Cell 2016
559
11

Mass cytometry: a powerful tool for dissecting the immune landscape.
Yannick Simoni, Melissa Hui Yen Chng, Shamin Li, Michael Fehlings, Evan W Newell. Curr Opin Immunol 2018
44
11

Mass Cytometry and Topological Data Analysis Reveal Immune Parameters Associated with Complications after Allogeneic Stem Cell Transplantation.
Tadepally Lakshmikanth, Axel Olin, Yang Chen, Jaromir Mikes, Erik Fredlund, Mats Remberger, Brigitta Omazic, Petter Brodin. Cell Rep 2017
35
11

Monitoring immune responses in the tumor microenvironment.
Jennifer A Wargo, Sangeetha M Reddy, Alexandre Reuben, Padmanee Sharma. Curr Opin Immunol 2016
66
11

A mathematical model of tumour angiogenesis: growth, regression and regrowth.
Guillermo Vilanova, Ignasi Colominas, Hector Gomez. J R Soc Interface 2017
19
11

Persistent homology of time-dependent functional networks constructed from coupled time series.
Bernadette J Stolz, Heather A Harrington, Mason A Porter. Chaos 2017
29
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.