A citation-based method for searching scientific literature


List of co-cited articles
1122 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity




Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1.
Mamta Tahiliani, Kian Peng Koh, Yinghua Shen, William A Pastor, Hozefa Bandukwala, Yevgeny Brudno, Suneet Agarwal, Lakshminarayan M Iyer, David R Liu, L Aravind,[...]. Science 2009
27

Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine.
Shinsuke Ito, Li Shen, Qing Dai, Susan C Wu, Leonard B Collins, James A Swenberg, Chuan He, Yi Zhang. Science 2011
27

Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA.
Yu-Fei He, Bin-Zhong Li, Zheng Li, Peng Liu, Yang Wang, Qingyu Tang, Jianping Ding, Yingying Jia, Zhangcheng Chen, Lin Li,[...]. Science 2011
22



Dnmt3L and the establishment of maternal genomic imprints.
D Bourc'his, G L Xu, C S Lin, B Bollman, T H Bestor. Science 2001
905
19

The SRA protein Np95 mediates epigenetic inheritance by recruiting Dnmt1 to methylated DNA.
Jafar Sharif, Masahiro Muto, Shin-ichiro Takebayashi, Isao Suetake, Akihiro Iwamatsu, Takaho A Endo, Jun Shinga, Yoko Mizutani-Koseki, Tetsuro Toyoda, Kunihiro Okamura,[...]. Nature 2007
784
19

UHRF1 plays a role in maintaining DNA methylation in mammalian cells.
Magnolia Bostick, Jong Kyong Kim, Pierre-Olivier Estève, Amander Clark, Sriharsa Pradhan, Steven E Jacobsen. Science 2007
826
19

Human DNA methylomes at base resolution show widespread epigenomic differences.
Ryan Lister, Mattia Pelizzola, Robert H Dowen, R David Hawkins, Gary Hon, Julian Tonti-Filippini, Joseph R Nery, Leonard Lee, Zhen Ye, Que-Minh Ngo,[...]. Nature 2009
17

Chemistry. How are alkynes scrambled?
Uwe H F Bunz. Science 2005
937
16



DNA methylation: roles in mammalian development.
Zachary D Smith, Alexander Meissner. Nat Rev Genet 2013
15

Essential role for de novo DNA methyltransferase Dnmt3a in paternal and maternal imprinting.
Masahiro Kaneda, Masaki Okano, Kenichiro Hata, Takashi Sado, Naomi Tsujimoto, En Li, Hiroyuki Sasaki. Nature 2004
872
15

Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification.
Shinsuke Ito, Ana C D'Alessio, Olena V Taranova, Kwonho Hong, Lawrence C Sowers, Yi Zhang. Nature 2010
14


The DNA methyltransferases of mammals.
T H Bestor. Hum Mol Genet 2000
12

Structure of Dnmt3a bound to Dnmt3L suggests a model for de novo DNA methylation.
Da Jia, Renata Z Jurkowska, Xing Zhang, Albert Jeltsch, Xiaodong Cheng. Nature 2007
515
12

De novo DNA cytosine methyltransferase activities in mouse embryonic stem cells.
H Lei, S P Oh, M Okano, R Jüttermann, K A Goss, R Jaenisch, E Li. Development 1996
589
12

Global epigenomic reconfiguration during mammalian brain development.
Ryan Lister, Eran A Mukamel, Joseph R Nery, Mark Urich, Clare A Puddifoot, Nicholas D Johnson, Jacinta Lucero, Yun Huang, Andrew J Dwork, Matthew D Schultz,[...]. Science 2013
11


The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes.
Tian-Peng Gu, Fan Guo, Hui Yang, Hai-Ping Wu, Gui-Fang Xu, Wei Liu, Zhi-Guo Xie, Linyu Shi, Xinyi He, Seung-gi Jin,[...]. Nature 2011
704
11

Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation.
Tuncay Baubec, Daniele F Colombo, Christiane Wirbelauer, Juliane Schmidt, Lukas Burger, Arnaud R Krebs, Altuna Akalin, Dirk Schübeler. Nature 2015
340
11


DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA.
Steen K T Ooi, Chen Qiu, Emily Bernstein, Keqin Li, Da Jia, Zhe Yang, Hediye Erdjument-Bromage, Paul Tempst, Shau-Ping Lin, C David Allis,[...]. Nature 2007
955
10


Eukaryotic cytosine methyltransferases.
Mary Grace Goll, Timothy H Bestor. Annu Rev Biochem 2005
10



The DNMT3B DNA methyltransferase gene is mutated in the ICF immunodeficiency syndrome.
R S Hansen, C Wijmenga, P Luo, A M Stanek, T K Canfield, C M Weemaes, S M Gartler. Proc Natl Acad Sci U S A 1999
520
10

Structural insight into autoinhibition and histone H3-induced activation of DNMT3A.
Xue Guo, Ling Wang, Jie Li, Zhanyu Ding, Jianxiong Xiao, Xiaotong Yin, Shuang He, Pan Shi, Liping Dong, Guohong Li,[...]. Nature 2015
178
10


CpG islands and the regulation of transcription.
Aimée M Deaton, Adrian Bird. Genes Dev 2011
9

Methylation of tRNAAsp by the DNA methyltransferase homolog Dnmt2.
Mary Grace Goll, Finn Kirpekar, Keith A Maggert, Jeffrey A Yoder, Chih-Lin Hsieh, Xiaoyu Zhang, Kent G Golic, Steven E Jacobsen, Timothy H Bestor. Science 2006
605
9

Establishment and maintenance of genomic methylation patterns in mouse embryonic stem cells by Dnmt3a and Dnmt3b.
Taiping Chen, Yoshihide Ueda, Jonathan E Dodge, Zhenjuan Wang, En Li. Mol Cell Biol 2003
515
9

Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine.
Khursheed Iqbal, Seung-Gi Jin, Gerd P Pfeifer, Piroska E Szabó. Proc Natl Acad Sci U S A 2011
473
9

Association of UHRF1 with methylated H3K9 directs the maintenance of DNA methylation.
Scott B Rothbart, Krzysztof Krajewski, Nataliya Nady, Wolfram Tempel, Sheng Xue, Aimee I Badeaux, Dalia Barsyte-Lovejoy, Jorge Y Martinez, Mark T Bedford, Stephen M Fuchs,[...]. Nat Struct Mol Biol 2012
217
9

Recognition of hemi-methylated DNA by the SRA protein UHRF1 by a base-flipping mechanism.
Kyohei Arita, Mariko Ariyoshi, Hidehito Tochio, Yusuke Nakamura, Masahiro Shirakawa. Nature 2008
318
9

Uhrf1-dependent H3K23 ubiquitylation couples maintenance DNA methylation and replication.
Atsuya Nishiyama, Luna Yamaguchi, Jafar Sharif, Yoshikazu Johmura, Takeshi Kawamura, Keiko Nakanishi, Shintaro Shimamura, Kyohei Arita, Tatsuhiko Kodama, Fuyuki Ishikawa,[...]. Nature 2013
196
9

The SRA domain of UHRF1 flips 5-methylcytosine out of the DNA helix.
Hideharu Hashimoto, John R Horton, Xing Zhang, Magnolia Bostick, Steven E Jacobsen, Xiaodong Cheng. Nature 2008
278
9

Chromosome instability and immunodeficiency syndrome caused by mutations in a DNA methyltransferase gene.
G L Xu, T H Bestor, D Bourc'his, C L Hsieh, N Tommerup, M Bugge, M Hulten, X Qu, J J Russo, E Viegas-Péquignot. Nature 1999
826
9

DNMT3L stimulates the DNA methylation activity of Dnmt3a and Dnmt3b through a direct interaction.
Isao Suetake, Fuminori Shinozaki, Junichi Miyagawa, Hideyuki Takeshima, Shoji Tajima. J Biol Chem 2004
286
9

Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a.
B H Ramsahoye, D Biniszkiewicz, F Lyko, V Clark, A P Bird, R Jaenisch. Proc Natl Acad Sci U S A 2000
628
9

Structure of DNMT1-DNA complex reveals a role for autoinhibition in maintenance DNA methylation.
Jikui Song, Olga Rechkoblit, Timothy H Bestor, Dinshaw J Patel. Science 2011
250
9

Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives.
Cornelia G Spruijt, Felix Gnerlich, Arne H Smits, Toni Pfaffeneder, Pascal W T C Jansen, Christina Bauer, Martin Münzel, Mirko Wagner, Markus Müller, Fariha Khan,[...]. Cell 2013
655
8

Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex.
X Nan, H H Ng, C A Johnson, C D Laherty, B M Turner, R N Eisenman, A Bird. Nature 1998
8

5-Hydroxymethylcytosine in the mammalian zygote is linked with epigenetic reprogramming.
Mark Wossidlo, Toshinobu Nakamura, Konstantin Lepikhov, C Joana Marques, Valeri Zakhartchenko, Michele Boiani, Julia Arand, Toru Nakano, Wolf Reik, Jörn Walter. Nat Commun 2011
520
8

Recognition and potential mechanisms for replication and erasure of cytosine hydroxymethylation.
Hideharu Hashimoto, Yiwei Liu, Anup K Upadhyay, Yanqi Chang, Shelley B Howerton, Paula M Vertino, Xing Zhang, Xiaodong Cheng. Nucleic Acids Res 2012
282
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.