A citation-based method for searching scientific literature

Peiyong Jiang, Kun Sun, Wenlei Peng, Suk Hang Cheng, Meng Ni, Philip C Yeung, Macy M S Heung, Tingting Xie, Huimin Shang, Ze Zhou, Rebecca W Y Chan, John Wong, Vincent W S Wong, Liona C Poon, Tak Yeung Leung, W K Jacky Lam, Jason Y K Chan, Henry L Y Chan, K C Allen Chan, Rossa W K Chiu, Y M Dennis Lo. Cancer Discov 2020
Times Cited: 41







List of co-cited articles
301 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Cell-free DNA Comprises an In Vivo Nucleosome Footprint that Informs Its Tissues-Of-Origin.
Matthew W Snyder, Martin Kircher, Andrew J Hill, Riza M Daza, Jay Shendure. Cell 2016
600
60

Enhanced detection of circulating tumor DNA by fragment size analysis.
Florent Mouliere, Dineika Chandrananda, Anna M Piskorz, Elizabeth K Moore, James Morris, Lise Barlebo Ahlborn, Richard Mair, Teodora Goranova, Francesco Marass, Katrin Heider,[...]. Sci Transl Med 2018
336
53

Genome-wide cell-free DNA fragmentation in patients with cancer.
Stephen Cristiano, Alessandro Leal, Jillian Phallen, Jacob Fiksel, Vilmos Adleff, Daniel C Bruhm, Sarah Østrup Jensen, Jamie E Medina, Carolyn Hruban, James R White,[...]. Nature 2019
316
53

Orientation-aware plasma cell-free DNA fragmentation analysis in open chromatin regions informs tissue of origin.
Kun Sun, Peiyong Jiang, Suk Hang Cheng, Timothy H T Cheng, John Wong, Vincent W S Wong, Simon S M Ng, Brigette B Y Ma, Tak Y Leung, Stephen L Chan,[...]. Genome Res 2019
82
46

Maternal plasma DNA sequencing reveals the genome-wide genetic and mutational profile of the fetus.
Y M Dennis Lo, K C Allen Chan, Hao Sun, Eric Z Chen, Peiyong Jiang, Fiona M F Lun, Yama W Zheng, Tak Y Leung, Tze K Lau, Charles R Cantor,[...]. Sci Transl Med 2010
618
46

Dnase1l3 deletion causes aberrations in length and end-motif frequencies in plasma DNA.
Lee Serpas, Rebecca W Y Chan, Peiyong Jiang, Meng Ni, Kun Sun, Ali Rashidfarrokhi, Chetna Soni, Vanja Sisirak, Wing-Shan Lee, Suk Hang Cheng,[...]. Proc Natl Acad Sci U S A 2019
67
43

Preferred end coordinates and somatic variants as signatures of circulating tumor DNA associated with hepatocellular carcinoma.
Peiyong Jiang, Kun Sun, Yu K Tong, Suk Hang Cheng, Timothy H T Cheng, Macy M S Heung, John Wong, Vincent W S Wong, Henry L Y Chan, K C Allen Chan,[...]. Proc Natl Acad Sci U S A 2018
71
43

Plasma DNA tissue mapping by genome-wide methylation sequencing for noninvasive prenatal, cancer, and transplantation assessments.
Kun Sun, Peiyong Jiang, K C Allen Chan, John Wong, Yvonne K Y Cheng, Raymond H S Liang, Wai-kong Chan, Edmond S K Ma, Stephen L Chan, Suk Hang Cheng,[...]. Proc Natl Acad Sci U S A 2015
347
41

Lengthening and shortening of plasma DNA in hepatocellular carcinoma patients.
Peiyong Jiang, Carol W M Chan, K C Allen Chan, Suk Hang Cheng, John Wong, Vincent Wai-Sun Wong, Grace L H Wong, Stephen L Chan, Tony S K Mok, Henry L Y Chan,[...]. Proc Natl Acad Sci U S A 2015
362
41

The Biology of Cell-free DNA Fragmentation and the Roles of DNASE1, DNASE1L3, and DFFB.
Diana S C Han, Meng Ni, Rebecca W Y Chan, Vicken W H Chan, Kathy O Lui, Rossa W K Chiu, Y M Dennis Lo. Am J Hum Genet 2020
47
41

Fragment Length of Circulating Tumor DNA.
Hunter R Underhill, Jacob O Kitzman, Sabine Hellwig, Noah C Welker, Riza Daza, Daniel N Baker, Keith M Gligorich, Robert C Rostomily, Mary P Bronner, Jay Shendure. PLoS Genet 2016
331
39

Detection and characterization of jagged ends of double-stranded DNA in plasma.
Peiyong Jiang, Tingting Xie, Spencer C Ding, Ze Zhou, Suk Hang Cheng, Rebecca W Y Chan, Wing-Shan Lee, Wenlei Peng, John Wong, Vincent W S Wong,[...]. Genome Res 2020
26
61


Size-tagged preferred ends in maternal plasma DNA shed light on the production mechanism and show utility in noninvasive prenatal testing.
Kun Sun, Peiyong Jiang, Ada I C Wong, Yvonne K Y Cheng, Suk Hang Cheng, Haiqiang Zhang, K C Allen Chan, Tak Y Leung, Rossa W K Chiu, Y M Dennis Lo. Proc Natl Acad Sci U S A 2018
69
34

Inferring expressed genes by whole-genome sequencing of plasma DNA.
Peter Ulz, Gerhard G Thallinger, Martina Auer, Ricarda Graf, Karl Kashofer, Stephan W Jahn, Luca Abete, Gunda Pristauz, Edgar Petru, Jochen B Geigl,[...]. Nat Genet 2016
156
34

Detection and localization of surgically resectable cancers with a multi-analyte blood test.
Joshua D Cohen, Lu Li, Yuxuan Wang, Christopher Thoburn, Bahman Afsari, Ludmila Danilova, Christopher Douville, Ammar A Javed, Fay Wong, Austin Mattox,[...]. Science 2018
31

Liquid biopsies come of age: towards implementation of circulating tumour DNA.
Jonathan C M Wan, Charles Massie, Javier Garcia-Corbacho, Florent Mouliere, James D Brenton, Carlos Caldas, Simon Pacey, Richard Baird, Nitzan Rosenfeld. Nat Rev Cancer 2017
31

Second generation noninvasive fetal genome analysis reveals de novo mutations, single-base parental inheritance, and preferred DNA ends.
K C Allen Chan, Peiyong Jiang, Kun Sun, Yvonne K Y Cheng, Yu K Tong, Suk Hang Cheng, Ada I C Wong, Irena Hudecova, Tak Y Leung, Rossa W K Chiu,[...]. Proc Natl Acad Sci U S A 2016
85
31

Inference of transcription factor binding from cell-free DNA enables tumor subtype prediction and early detection.
Peter Ulz, Samantha Perakis, Qing Zhou, Tina Moser, Jelena Belic, Isaac Lazzeri, Albert Wölfler, Armin Zebisch, Armin Gerger, Gunda Pristauz,[...]. Nat Commun 2019
51
31

Size distributions of maternal and fetal DNA in maternal plasma.
K C Allen Chan, Jun Zhang, Angela B Y Hui, Nathalie Wong, Tze K Lau, Tse N Leung, Kwok-Wai Lo, Dolly W S Huang, Y M Dennis Lo. Clin Chem 2004
393
29

Comprehensive human cell-type methylation atlas reveals origins of circulating cell-free DNA in health and disease.
Joshua Moss, Judith Magenheim, Daniel Neiman, Hai Zemmour, Netanel Loyfer, Amit Korach, Yaacov Samet, Myriam Maoz, Henrik Druid, Peter Arner,[...]. Nat Commun 2018
250
26

Detection of circulating tumor DNA in early- and late-stage human malignancies.
Chetan Bettegowda, Mark Sausen, Rebecca J Leary, Isaac Kinde, Yuxuan Wang, Nishant Agrawal, Bjarne R Bartlett, Hao Wang, Brandon Luber, Rhoda M Alani,[...]. Sci Transl Med 2014
24

Feasibility of blood testing combined with PET-CT to screen for cancer and guide intervention.
Anne Marie Lennon, Adam H Buchanan, Isaac Kinde, Andrew Warren, Ashley Honushefsky, Ariella T Cohain, David H Ledbetter, Fred Sanfilippo, Kathleen Sheridan, Dillenia Rosica,[...]. Science 2020
152
24

High-resolution characterization of sequence signatures due to non-random cleavage of cell-free DNA.
Dineika Chandrananda, Natalie P Thorne, Melanie Bahlo. BMC Med Genomics 2015
70
24

Non-random fragmentation patterns in circulating cell-free DNA reflect epigenetic regulation.
Maxim Ivanov, Ancha Baranova, Timothy Butler, Paul Spellman, Vladislav Mileyko. BMC Genomics 2015
61
24

DNA fragments in the blood plasma of cancer patients: quantitations and evidence for their origin from apoptotic and necrotic cells.
S Jahr, H Hentze, S Englisch, D Hardt, F O Fackelmayer, R D Hesch, R Knippers. Cancer Res 2001
24

High fragmentation characterizes tumour-derived circulating DNA.
Florent Mouliere, Bruno Robert, Erika Arnau Peyrotte, Maguy Del Rio, Marc Ychou, Franck Molina, Celine Gongora, Alain R Thierry. PLoS One 2011
306
24

Analysis of Plasma Epstein-Barr Virus DNA to Screen for Nasopharyngeal Cancer.
K C Allen Chan, John K S Woo, Ann King, Benny C Y Zee, W K Jacky Lam, Stephen L Chan, Sam W I Chu, Constance Mak, Irene O L Tse, Samantha Y M Leung,[...]. N Engl J Med 2017
310
21

Integrating genomic features for non-invasive early lung cancer detection.
Jacob J Chabon, Emily G Hamilton, David M Kurtz, Mohammad S Esfahani, Everett J Moding, Henning Stehr, Joseph Schroers-Martin, Barzin Y Nabet, Binbin Chen, Aadel A Chaudhuri,[...]. Nature 2020
136
21

Presence of fetal DNA in maternal plasma and serum.
Y M Lo, N Corbetta, P F Chamberlain, V Rai, I L Sargent, C W Redman, J S Wainscoat. Lancet 1997
21

Epigenetics, fragmentomics, and topology of cell-free DNA in liquid biopsies.
Y M Dennis Lo, Diana S C Han, Peiyong Jiang, Rossa W K Chiu. Science 2021
45
21

Size-based molecular diagnostics using plasma DNA for noninvasive prenatal testing.
Stephanie C Y Yu, K C Allen Chan, Yama W L Zheng, Peiyong Jiang, Gary J W Liao, Hao Sun, Ranjit Akolekar, Tak Y Leung, Attie T J I Go, John M G van Vugt,[...]. Proc Natl Acad Sci U S A 2014
172
19

Noninvasive prenatal methylomic analysis by genomewide bisulfite sequencing of maternal plasma DNA.
Fiona M F Lun, Rossa W K Chiu, Kun Sun, Tak Y Leung, Peiyong Jiang, K C Allen Chan, Hao Sun, Y M Dennis Lo. Clin Chem 2013
95
19

Noninvasive detection of cancer-associated genome-wide hypomethylation and copy number aberrations by plasma DNA bisulfite sequencing.
K C Allen Chan, Peiyong Jiang, Carol W M Chan, Kun Sun, John Wong, Edwin P Hui, Stephen L Chan, Wing Cheong Chan, David S C Hui, Simon S M Ng,[...]. Proc Natl Acad Sci U S A 2013
236
19

Plasma DNA Profile Associated with DNASE1L3 Gene Mutations: Clinical Observations, Relationships to Nuclease Substrate Preference, and In Vivo Correction.
Rebecca W Y Chan, Lee Serpas, Meng Ni, Stefano Volpi, Linda T Hiraki, Lai-Shan Tam, Ali Rashidfarrokhi, Priscilla C H Wong, Lydia H P Tam, Yueyang Wang,[...]. Am J Hum Genet 2020
13
61

Current and future perspectives of liquid biopsies in genomics-driven oncology.
Ellen Heitzer, Imran S Haque, Charles E S Roberts, Michael R Speicher. Nat Rev Genet 2019
457
19

Identification of tissue-specific cell death using methylation patterns of circulating DNA.
Roni Lehmann-Werman, Daniel Neiman, Hai Zemmour, Joshua Moss, Judith Magenheim, Adi Vaknin-Dembinsky, Sten Rubertsson, Bengt Nellgård, Kaj Blennow, Henrik Zetterberg,[...]. Proc Natl Acad Sci U S A 2016
314
17

Detection and quantification of mutations in the plasma of patients with colorectal tumors.
Frank Diehl, Meng Li, Devin Dressman, Yiping He, Dong Shen, Steve Szabo, Luis A Diaz, Steven N Goodman, Kerstin A David, Hartmut Juhl,[...]. Proc Natl Acad Sci U S A 2005
774
17

Noninvasive prenatal diagnosis of fetal chromosomal aneuploidy by massively parallel genomic sequencing of DNA in maternal plasma.
Rossa W K Chiu, K C Allen Chan, Yuan Gao, Virginia Y M Lau, Wenli Zheng, Tak Y Leung, Chris H F Foo, Bin Xie, Nancy B Y Tsui, Fiona M F Lun,[...]. Proc Natl Acad Sci U S A 2008
580
17

Nonhematopoietically derived DNA is shorter than hematopoietically derived DNA in plasma: a transplantation model.
Yama W L Zheng, K C Allen Chan, Hao Sun, Peiyong Jiang, Xiaoxi Su, Eric Z Chen, Fiona M F Lun, Emily C W Hung, Vincent Lee, John Wong,[...]. Clin Chem 2012
81
17


Identification and characterization of extrachromosomal circular DNA in maternal plasma.
Sarah T K Sin, Peiyong Jiang, Jiaen Deng, Lu Ji, Suk Hang Cheng, Anindya Dutta, Tak Y Leung, K C Allen Chan, Rossa W K Chiu, Y M Dennis Lo. Proc Natl Acad Sci U S A 2020
36
19

Single-stranded DNA library preparation uncovers the origin and diversity of ultrashort cell-free DNA in plasma.
Philip Burnham, Min Seong Kim, Sean Agbor-Enoh, Helen Luikart, Hannah A Valantine, Kiran K Khush, Iwijn De Vlaminck. Sci Rep 2016
98
17

ctDNA monitoring using patient-specific sequencing and integration of variant reads.
Jonathan C M Wan, Katrin Heider, Davina Gale, Suzanne Murphy, Eyal Fisher, Florent Mouliere, Andrea Ruiz-Valdepenas, Angela Santonja, James Morris, Dineika Chandrananda,[...]. Sci Transl Med 2020
59
17

Cell-Free DNA and Apoptosis: How Dead Cells Inform About the Living.
Ellen Heitzer, Lisa Auinger, Michael R Speicher. Trends Mol Med 2020
48
17

Liquid biopsies: genotyping circulating tumor DNA.
Luis A Diaz, Alberto Bardelli. J Clin Oncol 2014
14

Plasma DNA aberrations in systemic lupus erythematosus revealed by genomic and methylomic sequencing.
Rebecca W Y Chan, Peiyong Jiang, Xianlu Peng, Lai-Shan Tam, Gary J W Liao, Edmund K M Li, Priscilla C H Wong, Hao Sun, K C Allen Chan, Rossa W K Chiu,[...]. Proc Natl Acad Sci U S A 2014
69
14

DNase1 Does Not Appear to Play a Major Role in the Fragmentation of Plasma DNA in a Knockout Mouse Model.
Timothy H T Cheng, Kathy O Lui, Xianlu Laura Peng, Suk Hang Cheng, Peiyong Jiang, K C Allen Chan, Rossa W K Chiu, Y M Dennis Lo. Clin Chem 2018
23
26

Origins, structures, and functions of circulating DNA in oncology.
A R Thierry, S El Messaoudi, P B Gahan, P Anker, M Stroun. Cancer Metastasis Rev 2016
351
14

Normal and Cancerous Tissues Release Extrachromosomal Circular DNA (eccDNA) into the Circulation.
Pankaj Kumar, Laura W Dillon, Yoshiyuki Shibata, Amir A Jazaeri, David R Jones, Anindya Dutta. Mol Cancer Res 2017
80
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.