A citation-based method for searching scientific literature

Lihong Peng, Xiongfei Tian, Geng Tian, Junlin Xu, Xin Huang, Yanbin Weng, Jialiang Yang, Liqian Zhou. RNA Biol 2020
Times Cited: 6







List of co-cited articles
9 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Single-Cell RNA-Seq Technologies and Related Computational Data Analysis.
Geng Chen, Baitang Ning, Tieliu Shi. Front Genet 2019
180
33

Comparative analysis of sequencing technologies for single-cell transcriptomics.
Kedar Nath Natarajan, Zhichao Miao, Miaomiao Jiang, Xiaoyun Huang, Hongpo Zhou, Jiarui Xie, Chunqing Wang, Shishang Qin, Zhikun Zhao, Liang Wu,[...]. Genome Biol 2019
42
33

A benchmark of batch-effect correction methods for single-cell RNA sequencing data.
Hoa Thi Nhu Tran, Kok Siong Ang, Marion Chevrier, Xiaomeng Zhang, Nicole Yee Shin Lee, Michelle Goh, Jinmiao Chen. Genome Biol 2020
149
33


Evaluating DNA Methylation, Gene Expression, Somatic Mutation, and Their Combinations in Inferring Tumor Tissue-of-Origin.
Haiyan Liu, Chun Qiu, Bo Wang, Pingping Bing, Geng Tian, Xueliang Zhang, Jun Ma, Bingsheng He, Jialiang Yang. Front Cell Dev Biol 2021
11
33

CMF-Impute: an accurate imputation tool for single-cell RNA-seq data.
Junlin Xu, Lijun Cai, Bo Liao, Wen Zhu, JiaLiang Yang. Bioinformatics 2020
13
33

Evaluating the Potential of T Cell Receptor Repertoires in Predicting the Prognosis of Resectable Non-Small Cell Lung Cancers.
Zhengbo Song, Xiangbin Chen, Yi Shi, Rongfang Huang, Wenxian Wang, Kunshou Zhu, Shaofeng Lin, Minxian Wang, Geng Tian, Jialiang Yang,[...]. Mol Ther Methods Clin Dev 2020
7
33

TOOme: A Novel Computational Framework to Infer Cancer Tissue-of-Origin by Integrating Both Gene Mutation and Expression.
Binsheng He, Jidong Lang, Bo Wang, Xiaojun Liu, Qingqing Lu, Jianjun He, Wei Gao, Pingping Bing, Geng Tian, Jialiang Yang. Front Bioeng Biotechnol 2020
13
33

A machine learning framework to trace tumor tissue-of-origin of 13 types of cancer based on DNA somatic mutation.
Bingsheng He, Chan Dai, Jidong Lang, Pingping Bing, Geng Tian, Bo Wang, Jialiang Yang. Biochim Biophys Acta Mol Basis Dis 2020
6
33

Canonical genetic signatures of the adult human brain.
Michael Hawrylycz, Jeremy A Miller, Vilas Menon, David Feng, Tim Dolbeare, Angela L Guillozet-Bongaarts, Anil G Jegga, Bruce J Aronow, Chang-Kyu Lee, Amy Bernard,[...]. Nat Neurosci 2015
225
16

Persistently active neurons in human medial frontal and medial temporal lobe support working memory.
Jan Kamiński, Shannon Sullivan, Jeffrey M Chung, Ian B Ross, Adam N Mamelak, Ueli Rutishauser. Nat Neurosci 2017
77
16

Nuclear RNA-seq of single neurons reveals molecular signatures of activation.
Benjamin Lacar, Sara B Linker, Baptiste N Jaeger, Suguna R Krishnaswami, Jerika J Barron, Martijn J E Kelder, Sarah L Parylak, Apuã C M Paquola, Pratap Venepally, Mark Novotny,[...]. Nat Commun 2016
178
16

The art of using t-SNE for single-cell transcriptomics.
Dmitry Kobak, Philipp Berens. Nat Commun 2019
111
16

Long-range connectivity defines behavioral specificity of amygdala neurons.
Verena Senn, Steffen B E Wolff, Cyril Herry, François Grenier, Ingrid Ehrlich, Jan Gründemann, Jonathan P Fadok, Christian Müller, Johannes J Letzkus, Andreas Lüthi. Neuron 2014
297
16

Challenges in unsupervised clustering of single-cell RNA-seq data.
Vladimir Yu Kiselev, Tallulah S Andrews, Martin Hemberg. Nat Rev Genet 2019
234
16

Differential expression of HCN subunits alters voltage-dependent gating of h-channels in CA1 pyramidal neurons from dorsal and ventral hippocampus.
Kelly A Dougherty, Daniel A Nicholson, Laurea Diaz, Eric W Buss, Krystina M Neuman, Dane M Chetkovich, Daniel Johnston. J Neurophysiol 2013
64
16

Ventral CA1 neurons store social memory.
Teruhiro Okuyama, Takashi Kitamura, Dheeraj S Roy, Shigeyoshi Itohara, Susumu Tonegawa. Science 2016
235
16

Bayesian approach to single-cell differential expression analysis.
Peter V Kharchenko, Lev Silberstein, David T Scadden. Nat Methods 2014
553
16

Localization of a stable neural correlate of associative memory.
Leon G Reijmers, Brian L Perkins, Naoki Matsuo, Mark Mayford. Science 2007
418
16

Basolateral to Central Amygdala Neural Circuits for Appetitive Behaviors.
Joshua Kim, Xiangyu Zhang, Shruti Muralidhar, Sarah A LeBlanc, Susumu Tonegawa. Neuron 2017
159
16

Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq.
Amit Zeisel, Ana B Muñoz-Manchado, Simone Codeluppi, Peter Lönnerberg, Gioele La Manno, Anna Juréus, Sueli Marques, Hermany Munguba, Liqun He, Christer Betsholtz,[...]. Science 2015
16

Decoding the development of the human hippocampus.
Suijuan Zhong, Wenyu Ding, Le Sun, Yufeng Lu, Hao Dong, Xiaoying Fan, Zeyuan Liu, Ruiguo Chen, Shu Zhang, Qiang Ma,[...]. Nature 2020
35
16

Distinct Neural Circuits for the Formation and Retrieval of Episodic Memories.
Dheeraj S Roy, Takashi Kitamura, Teruhiro Okuyama, Sachie K Ogawa, Chen Sun, Yuichi Obata, Atsushi Yoshiki, Susumu Tonegawa. Cell 2017
102
16

The contextual brain: implications for fear conditioning, extinction and psychopathology.
Stephen Maren, K Luan Phan, Israel Liberzon. Nat Rev Neurosci 2013
821
16

Switching on and off fear by distinct neuronal circuits.
Cyril Herry, Stephane Ciocchi, Verena Senn, Lynda Demmou, Christian Müller, Andreas Lüthi. Nature 2008
621
16

RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells.
Kok Hao Chen, Alistair N Boettiger, Jeffrey R Moffitt, Siyuan Wang, Xiaowei Zhuang. Science 2015
714
16

An anatomically comprehensive atlas of the adult human brain transcriptome.
Michael J Hawrylycz, Ed S Lein, Angela L Guillozet-Bongaarts, Elaine H Shen, Lydia Ng, Jeremy A Miller, Louie N van de Lagemaat, Kimberly A Smith, Amanda Ebbert, Zackery L Riley,[...]. Nature 2012
16


Involvement of the amygdala in memory storage: interaction with other brain systems.
J L McGaugh, L Cahill, B Roozendaal. Proc Natl Acad Sci U S A 1996
517
16

Functional correlates of the lateral and medial entorhinal cortex: objects, path integration and local-global reference frames.
James J Knierim, Joshua P Neunuebel, Sachin S Deshmukh. Philos Trans R Soc Lond B Biol Sci 2013
204
16

Neuronal circuits for fear and anxiety.
Philip Tovote, Jonathan Paul Fadok, Andreas Lüthi. Nat Rev Neurosci 2015
685
16

Hipposeq: a comprehensive RNA-seq database of gene expression in hippocampal principal neurons.
Mark S Cembrowski, Lihua Wang, Ken Sugino, Brenda C Shields, Nelson Spruston. Elife 2016
161
16

A systematic evaluation of single cell RNA-seq analysis pipelines.
Beate Vieth, Swati Parekh, Christoph Ziegenhain, Wolfgang Enard, Ines Hellmann. Nat Commun 2019
89
16

RNAscope: a novel in situ RNA analysis platform for formalin-fixed, paraffin-embedded tissues.
Fay Wang, John Flanagan, Nan Su, Li-Chong Wang, Son Bui, Allissa Nielson, Xingyong Wu, Hong-Thuy Vo, Xiao-Jun Ma, Yuling Luo. J Mol Diagn 2012
16


RNA-Seq: a revolutionary tool for transcriptomics.
Zhong Wang, Mark Gerstein, Michael Snyder. Nat Rev Genet 2009
16

Different Neuronal Activity Patterns Induce Different Gene Expression Programs.
Kelsey M Tyssowski, Nicholas R DeStefino, Jin-Hyung Cho, Carissa J Dunn, Robert G Poston, Crista E Carty, Richard D Jones, Sarah M Chang, Palmyra Romeo, Mary K Wurzelmann,[...]. Neuron 2018
99
16

Conserved properties of dentate gyrus neurogenesis across postnatal development revealed by single-cell RNA sequencing.
Hannah Hochgerner, Amit Zeisel, Peter Lönnerberg, Sten Linnarsson. Nat Neurosci 2018
125
16

Wiring and Molecular Features of Prefrontal Ensembles Representing Distinct Experiences.
Li Ye, William E Allen, Kimberly R Thompson, Qiyuan Tian, Brian Hsueh, Charu Ramakrishnan, Ai-Chi Wang, Joshua H Jennings, Avishek Adhikari, Casey H Halpern,[...]. Cell 2016
170
16

Single-neuron correlates of atypical face processing in autism.
Ueli Rutishauser, Oana Tudusciuc, Shuo Wang, Adam N Mamelak, Ian B Ross, Ralph Adolphs. Neuron 2013
44
16

A novel environment-evoked transcriptional signature predicts reactivity in single dentate granule neurons.
Baptiste N Jaeger, Sara B Linker, Sarah L Parylak, Jerika J Barron, Iryna S Gallina, Christian D Saavedra, Conor Fitzpatrick, Christina K Lim, Simon T Schafer, Benjamin Lacar,[...]. Nat Commun 2018
26
16

Antagonistic negative and positive neurons of the basolateral amygdala.
Joshua Kim, Michele Pignatelli, Sangyu Xu, Shigeyoshi Itohara, Susumu Tonegawa. Nat Neurosci 2016
149
16

Dissociable Structural and Functional Hippocampal Outputs via Distinct Subiculum Cell Classes.
Mark S Cembrowski, Matthew G Phillips, Salvatore F DiLisio, Brenda C Shields, Johan Winnubst, Jayaram Chandrashekar, Erhan Bas, Nelson Spruston. Cell 2018
70
16


Single-unit responses selective for whole faces in the human amygdala.
Ueli Rutishauser, Oana Tudusciuc, Dirk Neumann, Adam N Mamelak, A Christopher Heller, Ian B Ross, Linda Philpott, William W Sutherling, Ralph Adolphs. Curr Biol 2011
65
16

Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons.
Naomi Habib, Yinqing Li, Matthias Heidenreich, Lukasz Swiech, Inbal Avraham-Davidi, John J Trombetta, Cynthia Hession, Feng Zhang, Aviv Regev. Science 2016
243
16


Extensive and spatially variable within-cell-type heterogeneity across the basolateral amygdala.
Timothy P O'Leary, Kaitlin E Sullivan, Lihua Wang, Jody Clements, Andrew L Lemire, Mark S Cembrowski. Elife 2020
5
20

Temporal evolution of cortical ensembles promoting remote memory retrieval.
Laura A DeNardo, Cindy D Liu, William E Allen, Eliza L Adams, Drew Friedmann, Lisa Fu, Casey J Guenthner, Marc Tessier-Lavigne, Liqun Luo. Nat Neurosci 2019
82
16

Permanent genetic access to transiently active neurons via TRAP: targeted recombination in active populations.
Casey J Guenthner, Kazunari Miyamichi, Helen H Yang, H Craig Heller, Liqun Luo. Neuron 2013
248
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.