A citation-based method for searching scientific literature

Giulia Maria Nava, Lavinia Grasso, Sarah Sertic, Achille Pellicioli, Marco Muzi Falconi, Federico Lazzaro. Int J Mol Sci 2020
Times Cited: 8







List of co-cited articles
126 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Abundant ribonucleotide incorporation into DNA by yeast replicative polymerases.
Stephanie A Nick McElhinny, Brian E Watts, Dinesh Kumar, Danielle L Watt, Else-Britt Lundström, Peter M J Burgers, Erik Johansson, Andrei Chabes, Thomas A Kunkel. Proc Natl Acad Sci U S A 2010
286
62

Rad52 Inverse Strand Exchange Drives RNA-Templated DNA Double-Strand Break Repair.
Olga M Mazina, Havva Keskin, Kritika Hanamshet, Francesca Storici, Alexander V Mazin. Mol Cell 2017
67
50

Classical non-homologous end-joining pathway utilizes nascent RNA for error-free double-strand break repair of transcribed genes.
Anirban Chakraborty, Nisha Tapryal, Tatiana Venkova, Nobuo Horikoshi, Raj K Pandita, Altaf H Sarker, Partha S Sarkar, Tej K Pandita, Tapas K Hazra. Nat Commun 2016
95
50

RNA-templated DNA repair.
Francesca Storici, Katarzyna Bebenek, Thomas A Kunkel, Dmitry A Gordenin, Michael A Resnick. Nature 2007
149
50

Enzymatic removal of ribonucleotides from DNA is essential for mammalian genome integrity and development.
Martin A M Reijns, Björn Rabe, Rachel E Rigby, Pleasantine Mill, Katy R Astell, Laura A Lettice, Shelagh Boyle, Andrea Leitch, Margaret Keighren, Fiona Kilanowski,[...]. Cell 2012
291
50

Genome instabilities arising from ribonucleotides in DNA.
Hannah L Klein. DNA Repair (Amst) 2017
25
50

Transcript-RNA-templated DNA recombination and repair.
Havva Keskin, Ying Shen, Fei Huang, Mikir Patel, Taehwan Yang, Katie Ashley, Alexander V Mazin, Francesca Storici. Nature 2014
181
50

Human Rad52 Promotes XPG-Mediated R-loop Processing to Initiate Transcription-Associated Homologous Recombination Repair.
Takaaki Yasuhara, Reona Kato, Yoshihiko Hagiwara, Bunsyo Shiotani, Motohiro Yamauchi, Shinichiro Nakada, Atsushi Shibata, Kiyoshi Miyagawa. Cell 2018
122
37

Ribonucleotides are signals for mismatch repair of leading-strand replication errors.
Scott A Lujan, Jessica S Williams, Anders R Clausen, Alan B Clark, Thomas A Kunkel. Mol Cell 2013
131
37

Ribonucleotide incorporation enables repair of chromosome breaks by nonhomologous end joining.
John M Pryor, Michael P Conlin, Juan Carvajal-Garcia, Megan E Luedeman, Adam J Luthman, George W Small, Dale A Ramsden. Science 2018
41
37

RNA intrusions change DNA elastic properties and structure.
Hsiang-Chih Chiu, Kyung Duk Koh, Marina Evich, Annie L Lesiak, Markus W Germann, Angelo Bongiorno, Elisa Riedo, Francesca Storici. Nanoscale 2014
33
37

Prevalent, Dynamic, and Conserved R-Loop Structures Associate with Specific Epigenomic Signatures in Mammals.
Lionel A Sanz, Stella R Hartono, Yoong Wearn Lim, Sandra Steyaert, Aparna Rajpurkar, Paul A Ginno, Xiaoqin Xu, Frédéric Chédin. Mol Cell 2016
230
37

RNase H and postreplication repair protect cells from ribonucleotides incorporated in DNA.
Federico Lazzaro, Daniele Novarina, Flavio Amara, Danielle L Watt, Jana E Stone, Vincenzo Costanzo, Peter M Burgers, Thomas A Kunkel, Paolo Plevani, Marco Muzi-Falconi. Mol Cell 2012
122
37

Repair of DNA double-strand breaks by templated nucleotide sequence insertions derived from distant regions of the genome.
Masahiro Onozawa, Zhenhua Zhang, Yoo Jung Kim, Liat Goldberg, Tamas Varga, P Leif Bergsagel, W Michael Kuehl, Peter D Aplan. Proc Natl Acad Sci U S A 2014
45
37

Introns Protect Eukaryotic Genomes from Transcription-Associated Genetic Instability.
Amandine Bonnet, Ana R Grosso, Abdessamad Elkaoutari, Emeline Coleno, Adrien Presle, Sreerama C Sridhara, Guilhem Janbon, Vincent Géli, Sérgio F de Almeida, Benoit Palancade. Mol Cell 2017
54
37

Ribose-seq: global mapping of ribonucleotides embedded in genomic DNA.
Kyung Duk Koh, Sathya Balachander, Jay R Hesselberth, Francesca Storici. Nat Methods 2015
75
37


RNA-driven genetic changes in bacteria and in human cells.
Ying Shen, Pavan Nandi, Matthew B Taylor, Samantha Stuckey, Hershel P Bhadsavle, Bernard Weiss, Francesca Storici. Mutat Res 2011
46
37

A role for small RNAs in DNA double-strand break repair.
Wei Wei, Zhaoqing Ba, Min Gao, Yang Wu, Yanting Ma, Simon Amiard, Charles I White, Jannie Michaela Rendtlew Danielsen, Yun-Gui Yang, Yijun Qi. Cell 2012
377
37

BRCA2 controls DNA:RNA hybrid level at DSBs by mediating RNase H2 recruitment.
Giuseppina D'Alessandro, Donna Rose Whelan, Sean Michael Howard, Valerio Vitelli, Xavier Renaudin, Marek Adamowicz, Fabio Iannelli, Corey Winston Jones-Weinert, MiYoung Lee, Valentina Matti,[...]. Nat Commun 2018
92
37

Processing ribonucleotides incorporated during eukaryotic DNA replication.
Jessica S Williams, Scott A Lujan, Thomas A Kunkel. Nat Rev Mol Cell Biol 2016
95
37

Double strand break repair by capture of retrotransposon sequences and reverse-transcribed spliced mRNA sequences in mouse zygotes.
Ryuichi Ono, Masayuki Ishii, Yoshitaka Fujihara, Moe Kitazawa, Takako Usami, Tomoko Kaneko-Ishino, Jun Kanno, Masahito Ikawa, Fumitoshi Ishino. Sci Rep 2015
22
37

From "Cellular" RNA to "Smart" RNA: Multiple Roles of RNA in Genome Stability and Beyond.
Flavia Michelini, Ameya P Jalihal, Sofia Francia, Chance Meers, Zachary T Neeb, Francesca Rossiello, Ubaldo Gioia, Julio Aguado, Corey Jones-Weinert, Brian Luke,[...]. Chem Rev 2018
35
37

Functional transcription promoters at DNA double-strand breaks mediate RNA-driven phase separation of damage-response factors.
Fabio Pessina, Fabio Giavazzi, Yandong Yin, Ubaldo Gioia, Valerio Vitelli, Alessandro Galbiati, Sara Barozzi, Massimiliano Garre, Amanda Oldani, Andrew Flaus,[...]. Nat Cell Biol 2019
95
37

Damage-induced lncRNAs control the DNA damage response through interaction with DDRNAs at individual double-strand breaks.
Flavia Michelini, Sethuramasundaram Pitchiaya, Valerio Vitelli, Sheetal Sharma, Ubaldo Gioia, Fabio Pessina, Matteo Cabrini, Yejun Wang, Ilaria Capozzo, Fabio Iannelli,[...]. Nat Cell Biol 2017
145
37

DNA repair mediated by endonuclease-independent LINE-1 retrotransposition.
Tammy A Morrish, Nicolas Gilbert, Jeremy S Myers, Bethaney J Vincent, Thomas D Stamato, Guillermo E Taccioli, Mark A Batzer, John V Moran. Nat Genet 2002
314
37

RNA-mediated recombination in S. cerevisiae.
L K Derr, J N Strathern, D J Garfinkel. Cell 1991
111
37

Transcription-coupled nucleotide excision repair factors promote R-loop-induced genome instability.
Julie Sollier, Caroline Townsend Stork, María L García-Rubio, Renee D Paulsen, Andrés Aguilera, Karlene A Cimprich. Mol Cell 2014
279
37

The roles of RNA in DNA double-strand break repair.
Aldo S Bader, Ben R Hawley, Ania Wilczynska, Martin Bushell. Br J Cancer 2020
35
37

Genome instability due to ribonucleotide incorporation into DNA.
Stephanie A Nick McElhinny, Dinesh Kumar, Alan B Clark, Danielle L Watt, Brian E Watts, Else-Britt Lundström, Erik Johansson, Andrei Chabes, Thomas A Kunkel. Nat Chem Biol 2010
269
37

R Loops: From Physiological to Pathological Roles.
Tatiana García-Muse, Andrés Aguilera. Cell 2019
130
37

Polymerase mu is a DNA-directed DNA/RNA polymerase.
Stephanie A Nick McElhinny, Dale A Ramsden. Mol Cell Biol 2003
139
37

Drosha drives the formation of DNA:RNA hybrids around DNA break sites to facilitate DNA repair.
Wei-Ting Lu, Ben R Hawley, George L Skalka, Robert A Baldock, Ewan M Smith, Aldo S Bader, Michal Malewicz, Felicity Z Watts, Ania Wilczynska, Martin Bushell. Nat Commun 2018
96
37

Transient RNA-DNA Hybrids Are Required for Efficient Double-Strand Break Repair.
Corina Ohle, Rafael Tesorero, Géza Schermann, Nikolay Dobrev, Irmgard Sinning, Tamás Fischer. Cell 2016
196
37

RNase H2-initiated ribonucleotide excision repair.
Justin L Sparks, Hyongi Chon, Susana M Cerritelli, Thomas A Kunkel, Erik Johansson, Robert J Crouch, Peter M Burgers. Mol Cell 2012
218
37

Ribonucleotides incorporated by the yeast mitochondrial DNA polymerase are not repaired.
Paulina H Wanrooij, Martin K M Engqvist, Josefin M E Forslund, Clara Navarrete, Anna Karin Nilsson, Juhan Sedman, Sjoerd Wanrooij, Anders R Clausen, Andrei Chabes. Proc Natl Acad Sci U S A 2017
22
37

Phase separation of 53BP1 determines liquid-like behavior of DNA repair compartments.
Sinan Kilic, Aleksandra Lezaja, Marco Gatti, Eliana Bianco, Jone Michelena, Ralph Imhof, Matthias Altmeyer. EMBO J 2019
114
25

Role for RNA:DNA hybrids in origin-independent replication priming in a eukaryotic system.
Ruth Stuckey, Néstor García-Rodríguez, Andrés Aguilera, Ralf Erik Wellinger. Proc Natl Acad Sci U S A 2015
63
25

RNase H1 directs origin-specific initiation of DNA replication in human mitochondria.
Viktor Posse, Ali Al-Behadili, Jay P Uhler, Anders R Clausen, Aurelio Reyes, Massimo Zeviani, Maria Falkenberg, Claes M Gustafsson. PLoS Genet 2019
28
25


Abasic and oxidized ribonucleotides embedded in DNA are processed by human APE1 and not by RNase H2.
Matilde Clarissa Malfatti, Sathya Balachander, Giulia Antoniali, Kyung Duk Koh, Christine Saint-Pierre, Didier Gasparutto, Hyongi Chon, Robert J Crouch, Francesca Storici, Gianluca Tell. Nucleic Acids Res 2017
29
25

R-loop generation during transcription: Formation, processing and cellular outcomes.
Boris P Belotserkovskii, Silvia Tornaletti, Alicia D D'Souza, Philip C Hanawalt. DNA Repair (Amst) 2018
45
25

R-Loops as Cellular Regulators and Genomic Threats.
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
194
25

CRISPR screens identify genomic ribonucleotides as a source of PARP-trapping lesions.
Michal Zimmermann, Olga Murina, Martin A M Reijns, Angelo Agathanggelou, Rachel Challis, Žygimantė Tarnauskaitė, Morwenna Muir, Adeline Fluteau, Michael Aregger, Andrea McEwan,[...]. Nature 2018
142
25

Site-specific DICER and DROSHA RNA products control the DNA-damage response.
Sofia Francia, Flavia Michelini, Alka Saxena, Dave Tang, Michiel de Hoon, Viviana Anelli, Marina Mione, Piero Carninci, Fabrizio d'Adda di Fagagna. Nature 2012
332
25

Transcript RNA supports precise repair of its own DNA gene.
Havva Keskin, Chance Meers, Francesca Storici. RNA Biol 2016
23
25

How RNA transcripts coordinate DNA recombination and repair.
Shane McDevitt, Timur Rusanov, Tatiana Kent, Gurushankar Chandramouly, Richard T Pomerantz. Nat Commun 2018
31
25

m6A promotes R-loop formation to facilitate transcription termination.
Xin Yang, Qian-Lan Liu, Wei Xu, Yi-Chang Zhang, Ying Yang, Lin-Fang Ju, Jing Chen, Yu-Sheng Chen, Kuan Li, Jie Ren,[...]. Cell Res 2019
43
25

The presence of ribonucleotides in mature closed-circular mitochondrial DNA.
L I Grossman, R Watson, J Vinograd. Proc Natl Acad Sci U S A 1973
92
25

DEAD Box 1 Facilitates Removal of RNA and Homologous Recombination at DNA Double-Strand Breaks.
Lei Li, Devon R Germain, Ho-Yin Poon, Matthew R Hildebrandt, Elizabeth A Monckton, Darin McDonald, Michael J Hendzel, Roseline Godbout. Mol Cell Biol 2016
72
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.