A citation-based method for searching scientific literature

Can Kockan, Kaiyuan Zhu, Natnatee Dokmai, Nikolai Karpov, M Oguzhan Kulekci, David P Woodruff, S Cenk Sahinalp. Nat Methods 2020
Times Cited: 11







List of co-cited articles
110 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Secure genome-wide association analysis using multiparty computation.
Hyunghoon Cho, David J Wu, Bonnie Berger. Nat Biotechnol 2018
44
72

Realizing private and practical pharmacological collaboration.
Brian Hie, Hyunghoon Cho, Bonnie Berger. Science 2018
23
54


Privacy challenges and research opportunities for genomic data sharing.
Luca Bonomi, Yingxiang Huang, Lucila Ohno-Machado. Nat Genet 2020
31
54

PRINCESS: Privacy-protecting Rare disease International Network Collaboration via Encryption through Software guard extensionS.
Feng Chen, Shuang Wang, Xiaoqian Jiang, Sijie Ding, Yao Lu, Jihoon Kim, S Cenk Sahinalp, Chisato Shimizu, Jane C Burns, Victoria J Wright,[...]. Bioinformatics 2017
43
45

Ultrafast homomorphic encryption models enable secure outsourcing of genotype imputation.
Miran Kim, Arif Ozgun Harmanci, Jean-Philippe Bossuat, Sergiu Carpov, Jung Hee Cheon, Ilaria Chillotti, Wonhee Cho, David Froelicher, Nicolas Gama, Mariya Georgieva,[...]. Cell Syst 2021
12
45

Identifying personal genomes by surname inference.
Melissa Gymrek, Amy L McGuire, David Golan, Eran Halperin, Yaniv Erlich. Science 2013
499
45

Private genome analysis through homomorphic encryption.
Miran Kim, Kristin Lauter. BMC Med Inform Decis Mak 2015
27
36

PRESAGE: PRivacy-preserving gEnetic testing via SoftwAre Guard Extension.
Feng Chen, Chenghong Wang, Wenrui Dai, Xiaoqian Jiang, Noman Mohammed, Md Momin Al Aziz, Md Nazmus Sadat, Cenk Sahinalp, Kristin Lauter, Shuang Wang. BMC Med Genomics 2017
18
36


A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
36

Data Sanitization to Reduce Private Information Leakage from Functional Genomics.
Gamze Gürsoy, Prashant Emani, Charlotte M Brannon, Otto A Jolanki, Arif Harmanci, J Seth Strattan, J Michael Cherry, Andrew D Miranker, Mark Gerstein. Cell 2020
13
36

Privacy Risks from Genomic Data-Sharing Beacons.
Suyash S Shringarpure, Carlos D Bustamante. Am J Hum Genet 2015
87
36

Routes for breaching and protecting genetic privacy.
Yaniv Erlich, Arvind Narayanan. Nat Rev Genet 2014
158
36

Identity inference of genomic data using long-range familial searches.
Yaniv Erlich, Tal Shor, Itsik Pe'er, Shai Carmi. Science 2018
107
36

Federated discovery and sharing of genomic data using Beacons.
Marc Fiume, Miroslav Cupak, Stephen Keenan, Jordi Rambla, Sabela de la Torre, Stephanie O M Dyke, Anthony J Brookes, Knox Carey, David Lloyd, Peter Goodhand,[...]. Nat Biotechnol 2019
39
36

Identification of individuals by trait prediction using whole-genome sequencing data.
Christoph Lippert, Riccardo Sabatini, M Cyrus Maher, Eun Yong Kang, Seunghak Lee, Okan Arikan, Alena Harley, Axel Bernal, Peter Garst, Victor Lavrenko,[...]. Proc Natl Acad Sci U S A 2017
61
36

Next-generation genotype imputation service and methods.
Sayantan Das, Lukas Forer, Sebastian Schönherr, Carlo Sidore, Adam E Locke, Alan Kwong, Scott I Vrieze, Emily Y Chew, Shawn Levy, Matt McGue,[...]. Nat Genet 2016
27

Privacy in the Genomic Era.
Muhammad Naveed, Erman Ayday, Ellen W Clayton, Jacques Fellay, Carl A Gunter, Jean-Pierre Hubaux, Bradley A Malin, Xiaofeng Wang. ACM Comput Surv 2015
78
27

Privacy-preserving genotype imputation in a trusted execution environment.
Natnatee Dokmai, Can Kockan, Kaiyuan Zhu, XiaoFeng Wang, S Cenk Sahinalp, Hyunghoon Cho. Cell Syst 2021
4
75

iDASH secure genome analysis competition 2018: blockchain genomic data access logging, homomorphic encryption on GWAS, and DNA segment searching.
Tsung-Ting Kuo, Xiaoqian Jiang, Haixu Tang, XiaoFeng Wang, Tyler Bath, Diyue Bu, Lei Wang, Arif Harmanci, Shaojie Zhang, Degui Zhi,[...]. BMC Med Genomics 2020
11
27

Genome Reconstruction Attacks Against Genomic Data-Sharing Beacons.
Kerem Ayoz, Erman Ayday, A Ercument Cicek. Proc Priv Enhanc Technol 2021
6
50

On sharing quantitative trait GWAS results in an era of multiple-omics data and the limits of genomic privacy.
Hae Kyung Im, Eric R Gamazon, Dan L Nicolae, Nancy J Cox. Am J Hum Genet 2012
55
27

Secure top most significant genome variants search: iDASH 2017 competition.
Sergiu Carpov, Thibaud Tortech. BMC Med Genomics 2018
5
60

A privacy-preserving solution for compressed storage and selective retrieval of genomic data.
Zhicong Huang, Erman Ayday, Huang Lin, Raeka S Aiyar, Adam Molyneaux, Zhenyu Xu, Jacques Fellay, Lars M Steinmetz, Jean-Pierre Hubaux. Genome Res 2016
14
27


Realizing the potential of blockchain technologies in genomics.
Halil Ibrahim Ozercan, Atalay Mert Ileri, Erman Ayday, Can Alkan. Genome Res 2018
32
27

Resolving individuals contributing trace amounts of DNA to highly complex mixtures using high-density SNP genotyping microarrays.
Nils Homer, Szabolcs Szelinger, Margot Redman, David Duggan, Waibhav Tembe, Jill Muehling, John V Pearson, Dietrich A Stephan, Stanley F Nelson, David W Craig. PLoS Genet 2008
471
27

Privacy Policy and Technology in Biomedical Data Science.
April Moreno Arellano, Wenrui Dai, Shuang Wang, Xiaoqian Jiang, Lucila Ohno-Machado. Annu Rev Biomed Data Sci 2018
15
27

Leveraging blockchain for immutable logging and querying across multiple sites.
Mustafa Safa Ozdayi, Murat Kantarcioglu, Bradley Malin. BMC Med Genomics 2020
6
50


Decentralized genomics audit logging via permissioned blockchain ledgering.
Nicholas D Pattengale, Corey M Hudson. BMC Med Genomics 2020
6
50

Addressing Beacon re-identification attacks: quantification and mitigation of privacy risks.
Jean Louis Raisaro, Florian Tramèr, Zhanglong Ji, Diyue Bu, Yongan Zhao, Knox Carey, David Lloyd, Heidi Sofia, Dixie Baker, Paul Flicek,[...]. J Am Med Inform Assoc 2017
39
27

Using blockchain to log genome dataset access: efficient storage and query.
Gamze Gürsoy, Robert Bjornson, Molly E Green, Mark Gerstein. BMC Med Genomics 2020
9
33


iDASH secure genome analysis competition 2017.
XiaoFeng Wang, Haixu Tang, Shuang Wang, Xiaoqian Jiang, Wenhao Wang, Diyue Bu, Lei Wang, Yicheng Jiang, Chenghong Wang. BMC Med Genomics 2018
12
27

Deriving genomic diagnoses without revealing patient genomes.
Karthik A Jagadeesh, David J Wu, Johannes A Birgmeier, Dan Boneh, Gill Bejerano. Science 2017
41
27

Protecting Privacy and Security of Genomic Data in i2b2 with Homomorphic Encryption and Differential Privacy.
Jean Louis Raisaro, Gwangbae Choi, Sylvain Pradervand, Raphael Colsenet, Nathalie Jacquemont, Nicolas Rosat, Vincent Mooser, Jean-Pierre Hubaux. IEEE/ACM Trans Comput Biol Bioinform 2018
14
27

Protecting genomic data analytics in the cloud: state of the art and opportunities.
Haixu Tang, Xiaoqian Jiang, Xiaofeng Wang, Shuang Wang, Heidi Sofia, Dov Fox, Kristin Lauter, Bradley Malin, Amalio Telenti, Li Xiong,[...]. BMC Med Genomics 2016
21
27

Benchmarking blockchain-based gene-drug interaction data sharing methods: A case study from the iDASH 2019 secure genome analysis competition blockchain track.
Tsung-Ting Kuo, Tyler Bath, Shuaicheng Ma, Nicholas Pattengale, Meng Yang, Yang Cao, Corey M Hudson, Jihoon Kim, Kai Post, Li Xiong,[...]. Int J Med Inform 2021
6
50

MedCo: Enabling Secure and Privacy-Preserving Exploration of Distributed Clinical and Genomic Data.
Jean Louis Raisaro, Juan Ramon Troncoso-Pastoriza, Mickael Misbach, Joao Sa Sousa, Sylvain Pradervand, Edoardo Missiaglia, Olivier Michielin, Bryan Ford, Jean-Pierre Hubaux. IEEE/ACM Trans Comput Biol Bioinform 2019
20
18

Secure Outsourced Matrix Computation and Application to Neural Networks.
Xiaoqian Jiang, Miran Kim, Kristin Lauter, Yongsoo Song. Conf Comput Commun Secur 2018
7
28

Privacy-preserving genomic testing in the clinic: a model using HIV treatment.
Paul J McLaren, Jean Louis Raisaro, Manel Aouri, Margalida Rotger, Erman Ayday, István Bartha, Maria B Delgado, Yannick Vallet, Huldrych F Günthard, Matthias Cavassini,[...]. Genet Med 2016
20
18

Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program.
Daniel Taliun, Daniel N Harris, Michael D Kessler, Jedidiah Carlson, Zachary A Szpiech, Raul Torres, Sarah A Gagliano Taliun, André Corvelo, Stephanie M Gogarten, Hyun Min Kang,[...]. Nature 2021
383
18

MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes.
Yun Li, Cristen J Willer, Jun Ding, Paul Scheet, Gonçalo R Abecasis. Genet Epidemiol 2010
18

Genotype imputation with thousands of genomes.
Bryan Howie, Jonathan Marchini, Matthew Stephens. G3 (Bethesda) 2011
678
18

Leaky Cauldron on the Dark Land: Understanding Memory Side-Channel Hazards in SGX.
Wenhao Wang, Guoxing Chen, Xiaorui Pan, Yinqian Zhang, XiaoFeng Wang, Vincent Bindschaedler, Haixu Tang, Carl A Gunter. Conf Comput Commun Secur 2017
5
40

Fast and accurate genotype imputation in genome-wide association studies through pre-phasing.
Bryan Howie, Christian Fuchsberger, Matthew Stephens, Jonathan Marchini, Gonçalo R Abecasis. Nat Genet 2012
18

A One-Penny Imputed Genome from Next-Generation Reference Panels.
Brian L Browning, Ying Zhou, Sharon R Browning. Am J Hum Genet 2018
491
18



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.