A citation-based method for searching scientific literature

Tarini S Ghosh, Mrinmoy Das, Ian B Jeffery, Paul W O'Toole. Elife 2020
Times Cited: 30







List of co-cited articles
186 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Gut microbiota composition correlates with diet and health in the elderly.
Marcus J Claesson, Ian B Jeffery, Susana Conde, Susan E Power, Eibhlís M O'Connor, Siobhán Cusack, Hugh M B Harris, Mairead Coakley, Bhuvaneswari Lakshminarayanan, Orla O'Sullivan,[...]. Nature 2012
36

Human gut microbiome viewed across age and geography.
Tanya Yatsunenko, Federico E Rey, Mark J Manary, Indi Trehan, Maria Gloria Dominguez-Bello, Monica Contreras, Magda Magris, Glida Hidalgo, Robert N Baldassano, Andrey P Anokhin,[...]. Nature 2012
33

Gut microbiota and aging.
Paul W O'Toole, Ian B Jeffery. Science 2015
390
33

Depicting the composition of gut microbiota in a population with varied ethnic origins but shared geography.
Mélanie Deschasaux, Kristien E Bouter, Andrei Prodan, Evgeni Levin, Albert K Groen, Hilde Herrema, Valentina Tremaroli, Guido J Bakker, Ilias Attaye, Sara-Joan Pinto-Sietsma,[...]. Nat Med 2018
206
26

A metagenome-wide association study of gut microbiota in type 2 diabetes.
Junjie Qin, Yingrui Li, Zhiming Cai, Shenghui Li, Jianfeng Zhu, Fan Zhang, Suisha Liang, Wenwei Zhang, Yuanlin Guan, Dongqian Shen,[...]. Nature 2012
20

Regional variation limits applications of healthy gut microbiome reference ranges and disease models.
Yan He, Wei Wu, Hui-Min Zheng, Pan Li, Daniel McDonald, Hua-Fang Sheng, Mu-Xuan Chen, Zi-Hui Chen, Gui-Yuan Ji, Zhong-Dai-Xi Zheng,[...]. Nat Med 2018
281
20

Signatures of early frailty in the gut microbiota.
Matthew A Jackson, Ian B Jeffery, Michelle Beaumont, Jordana T Bell, Andrew G Clark, Ruth E Ley, Paul W O'Toole, Tim D Spector, Claire J Steves. Genome Med 2016
161
16

Species-level functional profiling of metagenomes and metatranscriptomes.
Eric A Franzosa, Lauren J McIver, Gholamali Rahnavard, Luke R Thompson, Melanie Schirmer, George Weingart, Karen Schwarzberg Lipson, Rob Knight, J Gregory Caporaso, Nicola Segata,[...]. Nat Methods 2018
441
16

Gut microbiota signatures of longevity.
Fanli Kong, Yutong Hua, Bo Zeng, Ruihong Ning, Ying Li, Jiangchao Zhao. Curr Biol 2016
116
16

Mediterranean diet intervention alters the gut microbiome in older people reducing frailty and improving health status: the NU-AGE 1-year dietary intervention across five European countries.
Tarini Shankar Ghosh, Simone Rampelli, Ian B Jeffery, Aurelia Santoro, Marta Neto, Miriam Capri, Enrico Giampieri, Amy Jennings, Marco Candela, Silvia Turroni,[...]. Gut 2020
144
16

Richness of human gut microbiome correlates with metabolic markers.
Emmanuelle Le Chatelier, Trine Nielsen, Junjie Qin, Edi Prifti, Falk Hildebrand, Gwen Falony, Mathieu Almeida, Manimozhiyan Arumugam, Jean-Michel Batto, Sean Kennedy,[...]. Nature 2013
16

Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer.
Jakob Wirbel, Paul Theodor Pyl, Ece Kartal, Konrad Zych, Alireza Kashani, Alessio Milanese, Jonas S Fleck, Anita Y Voigt, Albert Palleja, Ruby Ponnudurai,[...]. Nat Med 2019
255
16

DADA2: High-resolution sample inference from Illumina amplicon data.
Benjamin J Callahan, Paul J McMurdie, Michael J Rosen, Andrew W Han, Amy Jo A Johnson, Susan P Holmes. Nat Methods 2016
16

Composition and temporal stability of the gut microbiota in older persons.
Ian B Jeffery, Denise B Lynch, Paul W O'Toole. ISME J 2016
152
13

Inflamm-aging. An evolutionary perspective on immunosenescence.
C Franceschi, M Bonafè, S Valensin, F Olivieri, M De Luca, E Ottaviani, G De Benedictis. Ann N Y Acad Sci 2000
13

Accessible, curated metagenomic data through ExperimentHub.
Edoardo Pasolli, Lucas Schiffer, Paolo Manghi, Audrey Renson, Valerie Obenchain, Duy Tin Truong, Francesco Beghini, Faizan Malik, Marcel Ramos, Jennifer B Dowd,[...]. Nat Methods 2017
99
13

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
13

US Immigration Westernizes the Human Gut Microbiome.
Pajau Vangay, Abigail J Johnson, Tonya L Ward, Gabriel A Al-Ghalith, Robin R Shields-Cutler, Benjamin M Hillmann, Sarah K Lucas, Lalit K Beura, Emily A Thompson, Lisa M Till,[...]. Cell 2018
219
13

The ancestral and industrialized gut microbiota and implications for human health.
Erica D Sonnenburg, Justin L Sonnenburg. Nat Rev Microbiol 2019
90
13

MetaPhlAn2 for enhanced metagenomic taxonomic profiling.
Duy Tin Truong, Eric A Franzosa, Timothy L Tickle, Matthias Scholz, George Weingart, Edoardo Pasolli, Adrian Tett, Curtis Huttenhower, Nicola Segata. Nat Methods 2015
830
13

Functional metagenomic profiling of intestinal microbiome in extreme ageing.
Simone Rampelli, Marco Candela, Silvia Turroni, Elena Biagi, Sebastiano Collino, Claudio Franceschi, Paul W O'Toole, Patrizia Brigidi. Aging (Albany NY) 2013
149
13

Comparison of the Gut Microbiota of Centenarians in Longevity Villages of South Korea with Those of Other Age Groups.
Bong-Soo Kim, Chong Won Choi, Hyoseung Shin, Seon-Pil Jin, Jung-Soo Bae, Mira Han, Eun Young Seo, Jongsik Chun, Jin Ho Chung. J Microbiol Biotechnol 2019
30
13

A Cross-Sectional Study of Compositional and Functional Profiles of Gut Microbiota in Sardinian Centenarians.
Lu Wu, Tiansheng Zeng, Angelo Zinellu, Salvatore Rubino, David J Kelvin, Ciriaco Carru. mSystems 2019
32
13

Gut Microbiota and Extreme Longevity.
Elena Biagi, Claudio Franceschi, Simone Rampelli, Marco Severgnini, Rita Ostan, Silvia Turroni, Clarissa Consolandi, Sara Quercia, Maria Scurti, Daniela Monti,[...]. Curr Biol 2016
310
13

Supplementation with Akkermansia muciniphila in overweight and obese human volunteers: a proof-of-concept exploratory study.
Clara Depommier, Amandine Everard, Céline Druart, Hubert Plovier, Matthias Van Hul, Sara Vieira-Silva, Gwen Falony, Jeroen Raes, Dominique Maiter, Nathalie M Delzenne,[...]. Nat Med 2019
452
13

Gut microbiome structure and metabolic activity in inflammatory bowel disease.
Eric A Franzosa, Alexandra Sirota-Madi, Julian Avila-Pacheco, Nadine Fornelos, Henry J Haiser, Stefan Reinker, Tommi Vatanen, A Brantley Hall, Himel Mallick, Lauren J McIver,[...]. Nat Microbiol 2019
341
13

American Gut: an Open Platform for Citizen Science Microbiome Research.
Daniel McDonald, Embriette Hyde, Justine W Debelius, James T Morton, Antonio Gonzalez, Gail Ackermann, Alexander A Aksenov, Bahar Behsaz, Caitriona Brennan, Yingfeng Chen,[...]. mSystems 2018
254
13

Diet rapidly and reproducibly alters the human gut microbiome.
Lawrence A David, Corinne F Maurice, Rachel N Carmody, David B Gootenberg, Julie E Button, Benjamin E Wolfe, Alisha V Ling, A Sloan Devlin, Yug Varma, Michael A Fischbach,[...]. Nature 2014
13

Global metabolic interaction network of the human gut microbiota for context-specific community-scale analysis.
Jaeyun Sung, Seunghyeon Kim, Josephine Jill T Cabatbat, Sungho Jang, Yong-Su Jin, Gyoo Yeol Jung, Nicholas Chia, Pan-Jun Kim. Nat Commun 2017
90
10

Metagenomic analysis of faecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer.
Jun Yu, Qiang Feng, Sunny Hei Wong, Dongya Zhang, Qiao Yi Liang, Youwen Qin, Longqing Tang, Hui Zhao, Jan Stenvang, Yanli Li,[...]. Gut 2017
363
10

High-level adherence to a Mediterranean diet beneficially impacts the gut microbiota and associated metabolome.
Francesca De Filippis, Nicoletta Pellegrini, Lucia Vannini, Ian B Jeffery, Antonietta La Storia, Luca Laghi, Diana I Serrazanetti, Raffaella Di Cagno, Ilario Ferrocino, Camilla Lazzi,[...]. Gut 2016
549
10

Age-dependent changes in GI physiology and microbiota: time to reconsider?
Ran An, Ellen Wilms, Ad A M Masclee, Hauke Smidt, Erwin G Zoetendal, Daisy Jonkers. Gut 2018
71
10

Towards standards for human fecal sample processing in metagenomic studies.
Paul I Costea, Georg Zeller, Shinichi Sunagawa, Eric Pelletier, Adriana Alberti, Florence Levenez, Melanie Tramontano, Marja Driessen, Rajna Hercog, Ferris-Elias Jung,[...]. Nat Biotechnol 2017
267
10

The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease.
Alberto Noronha, Jennifer Modamio, Yohan Jarosz, Elisabeth Guerard, Nicolas Sompairac, German Preciat, Anna Dröfn Daníelsdóttir, Max Krecke, Diane Merten, Hulda S Haraldsdóttir,[...]. Nucleic Acids Res 2019
99
10

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa.
Carlotta De Filippo, Duccio Cavalieri, Monica Di Paola, Matteo Ramazzotti, Jean Baptiste Poullet, Sebastien Massart, Silvia Collini, Giuseppe Pieraccini, Paolo Lionetti. Proc Natl Acad Sci U S A 2010
10

Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
10

Uncovering the trimethylamine-producing bacteria of the human gut microbiota.
Silke Rath, Benjamin Heidrich, Dietmar H Pieper, Marius Vital. Microbiome 2017
165
10

Age- and Sex-Dependent Patterns of Gut Microbial Diversity in Human Adults.
Jacobo de la Cuesta-Zuluaga, Scott T Kelley, Yingfeng Chen, Juan S Escobar, Noel T Mueller, Ruth E Ley, Daniel McDonald, Shi Huang, Austin D Swafford, Rob Knight,[...]. mSystems 2019
88
10

Healthspan and lifespan extension by fecal microbiota transplantation into progeroid mice.
Clea Bárcena, Rafael Valdés-Mas, Pablo Mayoral, Cecilia Garabaya, Sylvère Durand, Francisco Rodríguez, María Teresa Fernández-García, Nuria Salazar, Alicja M Nogacka, Nuria Garatachea,[...]. Nat Med 2019
113
10

Personalized Gut Mucosal Colonization Resistance to Empiric Probiotics Is Associated with Unique Host and Microbiome Features.
Niv Zmora, Gili Zilberman-Schapira, Jotham Suez, Uria Mor, Mally Dori-Bachash, Stavros Bashiardes, Eran Kotler, Maya Zur, Dana Regev-Lehavi, Rotem Ben-Zeev Brik,[...]. Cell 2018
473
10

Akkermansia muciniphila in the Human Gastrointestinal Tract: When, Where, and How?
Sharon Y Geerlings, Ioannis Kostopoulos, Willem M de Vos, Clara Belzer. Microorganisms 2018
123
10

The pros, cons, and many unknowns of probiotics.
Jotham Suez, Niv Zmora, Eran Segal, Eran Elinav. Nat Med 2019
216
10

Gut microbiome and serum metabolome alterations in obesity and after weight-loss intervention.
Ruixin Liu, Jie Hong, Xiaoqiang Xu, Qiang Feng, Dongya Zhang, Yanyun Gu, Juan Shi, Shaoqian Zhao, Wen Liu, Xiaokai Wang,[...]. Nat Med 2017
477
10

Meta-analysis of gut microbiome studies identifies disease-specific and shared responses.
Claire Duvallet, Sean M Gibbons, Thomas Gurry, Rafael A Irizarry, Eric J Alm. Nat Commun 2017
327
10

The role of the gut microbiota in nutrition and health.
Harry J Flint, Karen P Scott, Petra Louis, Sylvia H Duncan. Nat Rev Gastroenterol Hepatol 2012
848
10

Enterotypes of the human gut microbiome.
Manimozhiyan Arumugam, Jeroen Raes, Eric Pelletier, Denis Le Paslier, Takuji Yamada, Daniel R Mende, Gabriel R Fernandes, Julien Tap, Thomas Bruls, Jean-Michel Batto,[...]. Nature 2011
10

The oral microbiota in colorectal cancer is distinctive and predictive.
Burkhardt Flemer, Ryan D Warren, Maurice P Barrett, Katryna Cisek, Anubhav Das, Ian B Jeffery, Eimear Hurley, Micheal O'Riordain, Fergus Shanahan, Paul W O'Toole. Gut 2018
184
10

Population-level analysis of gut microbiome variation.
Gwen Falony, Marie Joossens, Sara Vieira-Silva, Jun Wang, Youssef Darzi, Karoline Faust, Alexander Kurilshikov, Marc Jan Bonder, Mireia Valles-Colomer, Doris Vandeputte,[...]. Science 2016
881
10

Metabolic signatures of extreme longevity in northern Italian centenarians reveal a complex remodeling of lipids, amino acids, and gut microbiota metabolism.
Sebastiano Collino, Ivan Montoliu, François-Pierre J Martin, Max Scherer, Daniela Mari, Stefano Salvioli, Laura Bucci, Rita Ostan, Daniela Monti, Elena Biagi,[...]. PLoS One 2013
122
10

Gut Microbiota, Muscle Mass and Function in Aging: A Focus on Physical Frailty and Sarcopenia.
Andrea Ticinesi, Antonio Nouvenne, Nicoletta Cerundolo, Pamela Catania, Beatrice Prati, Claudio Tana, Tiziana Meschi. Nutrients 2019
65
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.