A citation-based method for searching scientific literature

Mihika T Kozma, Hanh Ngo-Vu, Yuen Yan Wong, Neal S Shukla, Shrikant D Pawar, Adriano Senatore, Manfred Schmidt, Charles D Derby. PLoS One 2020
Times Cited: 13







List of co-cited articles
153 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity




Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.
Ana Conesa, Stefan Götz, Juan Miguel García-Gómez, Javier Terol, Manuel Talón, Montserrat Robles. Bioinformatics 2005
38

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
38

Ancient protostome origin of chemosensory ionotropic glutamate receptors and the evolution of insect taste and olfaction.
Vincent Croset, Raphael Rytz, Scott F Cummins, Aidan Budd, David Brawand, Henrik Kaessmann, Toby J Gibson, Richard Benton. PLoS Genet 2010
415
38

Olfaction: diverse species, conserved principles.
Barry W Ache, Janet M Young. Neuron 2005
322
38

Evolutionary History of Chemosensory-Related Gene Families across the Arthropoda.
Seong-Il Eyun, Ho Young Soh, Marijan Posavi, James B Munro, Daniel S T Hughes, Shwetha C Murali, Jiaxin Qu, Shannon Dugan, Sandra L Lee, Hsu Chao,[...]. Mol Biol Evol 2017
85
38

Molecular Mechanisms of Reception and Perireception in Crustacean Chemoreception: A Comparative Review.
Charles D Derby, Mihika T Kozma, Adriano Senatore, Manfred Schmidt. Chem Senses 2016
41
38


Single cell transcriptomes reveal expression patterns of chemoreceptor genes in olfactory sensory neurons of the Caribbean spiny lobster, Panulirus argus.
Mihika T Kozma, Hanh Ngo-Vu, Matthew T Rump, Yuriy V Bobkov, Barry W Ache, Charles D Derby. BMC Genomics 2020
10
50

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
30

IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.
Lam-Tung Nguyen, Heiko A Schmidt, Arndt von Haeseler, Bui Quang Minh. Mol Biol Evol 2015
30

Soluble proteins of chemical communication: an overview across arthropods.
Paolo Pelosi, Immacolata Iovinella, Antonio Felicioli, Francesca R Dani. Front Physiol 2014
227
30


Variant ionotropic glutamate receptors as chemosensory receptors in Drosophila.
Richard Benton, Kirsten S Vannice, Carolina Gomez-Diaz, Leslie B Vosshall. Cell 2009
760
30

The chemoreceptor genes of the waterflea Daphnia pulex: many Grs but no Ors.
D Carolina Peñalva-Arana, Michael Lynch, Hugh M Robertson. BMC Evol Biol 2009
74
30

Expression of ionotropic receptors in terrestrial hermit crab's olfactory sensory neurons.
Katrin C Groh-Lunow, Merid N Getahun, Ewald Grosse-Wilde, Bill S Hansson. Front Cell Neurosci 2015
31
30

The hermit crab's nose-antennal transcriptomics.
Katrin C Groh, Heiko Vogel, Marcus C Stensmyr, Ewald Grosse-Wilde, Bill S Hansson. Front Neurosci 2014
24
30

High-throughput functional annotation and data mining with the Blast2GO suite.
Stefan Götz, Juan Miguel García-Gómez, Javier Terol, Tim D Williams, Shivashankar H Nagaraj, María José Nueda, Montserrat Robles, Manuel Talón, Joaquín Dopazo, Ana Conesa. Nucleic Acids Res 2008
23

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis.
Brian J Haas, Alexie Papanicolaou, Moran Yassour, Manfred Grabherr, Philip D Blood, Joshua Bowden, Matthew Brian Couger, David Eccles, Bo Li, Matthias Lieber,[...]. Nat Protoc 2013
23

Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
M Ashburner, C A Ball, J A Blake, D Botstein, H Butler, J M Cherry, A P Davis, K Dolinski, S S Dwight, J T Eppig,[...]. Nat Genet 2000
23


Analysis of Drosophila TRPA1 reveals an ancient origin for human chemical nociception.
Kyeongjin Kang, Stefan R Pulver, Vincent C Panzano, Elaine C Chang, Leslie C Griffith, Douglas L Theobald, Paul A Garrity. Nature 2010
211
23


The origin of the odorant receptor gene family in insects.
Philipp Brand, Hugh M Robertson, Wei Lin, Ratnasri Pothula, William E Klingeman, Juan Luis Jurat-Fuentes, Brian R Johnson. Elife 2018
52
23

InterProScan 5: genome-scale protein function classification.
Philip Jones, David Binns, Hsin-Yu Chang, Matthew Fraser, Weizhong Li, Craig McAnulla, Hamish McWilliam, John Maslen, Alex Mitchell, Gift Nuka,[...]. Bioinformatics 2014
23

Opsins in onychophora (velvet worms) suggest a single origin and subsequent diversification of visual pigments in arthropods.
Lars Hering, Miriam J Henze, Martin Kohler, Almut Kelber, Christoph Bleidorn, Maren Leschke, Birgit Nickel, Matthias Meyer, Martin Kircher, Paul Sunnucks,[...]. Mol Biol Evol 2012
40
23


TRP channels.
Kartik Venkatachalam, Craig Montell. Annu Rev Biochem 2007
23

Drosophila auditory organ genes and genetic hearing defects.
Pingkalai R Senthilan, David Piepenbrock, Guvanch Ovezmyradov, Björn Nadrowski, Susanne Bechstedt, Stephanie Pauls, Margret Winkler, Wiebke Möbius, Jonathon Howard, Martin C Göpfert. Cell 2012
114
23

Tick Haller's Organ, a New Paradigm for Arthropod Olfaction: How Ticks Differ from Insects.
Ann L Carr, Robert D Mitchell, Anirudh Dhammi, Brooke W Bissinger, Daniel E Sonenshine, R Michael Roe. Int J Mol Sci 2017
19
23


ModelFinder: fast model selection for accurate phylogenetic estimates.
Subha Kalyaanamoorthy, Bui Quang Minh, Thomas K F Wong, Arndt von Haeseler, Lars S Jermiin. Nat Methods 2017
23

The Toxicogenome of Hyalella azteca: A Model for Sediment Ecotoxicology and Evolutionary Toxicology.
Helen C Poynton, Simone Hasenbein, Joshua B Benoit, Maria S Sepulveda, Monica F Poelchau, Daniel S T Hughes, Shwetha C Murali, Shuai Chen, Karl M Glastad, Michael A D Goodisman,[...]. Environ Sci Technol 2018
44
23

Ionotropic crustacean olfactory receptors.
Elizabeth A Corey, Yuriy Bobkov, Kirill Ukhanov, Barry W Ache. PLoS One 2013
38
23

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.
Kazutaka Katoh, Kazuharu Misawa, Kei-ichi Kuma, Takashi Miyata. Nucleic Acids Res 2002
23


Lobster olfactory genomics.
Timothy S McClintock, Barry W Ache, Charles D Derby. Integr Comp Biol 2006
12
25


A phylogenomic framework, evolutionary timeline and genomic resources for comparative studies of decapod crustaceans.
Joanna M Wolfe, Jesse W Breinholt, Keith A Crandall, Alan R Lemmon, Emily Moriarty Lemmon, Laura E Timm, Mark E Siddall, Heather D Bracken-Grissom. Proc Biol Sci 2019
50
23

Phylogenomics resolves the timing and pattern of insect evolution.
Bernhard Misof, Shanlin Liu, Karen Meusemann, Ralph S Peters, Alexander Donath, Christoph Mayer, Paul B Frandsen, Jessica Ware, Tomáš Flouri, Rolf G Beutel,[...]. Science 2014
23


BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.
Felipe A Simão, Robert M Waterhouse, Panagiotis Ioannidis, Evgenia V Kriventseva, Evgeny M Zdobnov. Bioinformatics 2015
15


REVIGO summarizes and visualizes long lists of gene ontology terms.
Fran Supek, Matko Bošnjak, Nives Škunca, Tomislav Šmuc. PLoS One 2011
15

Full-length transcriptome assembly from RNA-Seq data without a reference genome.
Manfred G Grabherr, Brian J Haas, Moran Yassour, Joshua Z Levin, Dawn A Thompson, Ido Amit, Xian Adiconis, Lin Fan, Raktima Raychowdhury, Qiandong Zeng,[...]. Nat Biotechnol 2011
15

Pyrexia is a new thermal transient receptor potential channel endowing tolerance to high temperatures in Drosophila melanogaster.
Youngseok Lee, Yong Lee, Jaejung Lee, Sunhoe Bang, Seogang Hyun, Jongkyun Kang, Sung-Tae Hong, Eunkyung Bae, Bong-Kiun Kaang, Jaeseob Kim. Nat Genet 2005
126
15

Short- and long-wavelength-sensitive opsins are involved in photoreception both in the retina and throughout the central nervous system of crayfish.
Alexandra C N Kingston, Thomas W Cronin. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2015
12
16


Activation of planarian TRPA1 by reactive oxygen species reveals a conserved mechanism for animal nociception.
Oscar M Arenas, Emanuela E Zaharieva, Alessia Para, Constanza Vásquez-Doorman, Christian P Petersen, Marco Gallio. Nat Neurosci 2017
59
15


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.