A citation-based method for searching scientific literature

Thomas J Butler, Katrina N Estep, Joshua A Sommers, Robert W Maul, Ann Zenobia Moore, Stefania Bandinelli, Francesco Cucca, Marcus A Tuke, Andrew R Wood, Sanjay Kumar Bharti, Daniel F Bogenhagen, Elena Yakubovskaya, Miguel Garcia-Diaz, Thomas A Guilliam, Alicia K Byrd, Kevin D Raney, Aidan J Doherty, Luigi Ferrucci, David Schlessinger, Jun Ding, Robert M Brosh. Hum Mol Genet 2020
Times Cited: 18







List of co-cited articles
181 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Association of G-quadruplex forming sequences with human mtDNA deletion breakpoints.
Dawei W Dong, Filipe Pereira, Steven P Barrett, Jill E Kolesar, Kajia Cao, Joana Damas, Liliya A Yatsunyk, F Brad Johnson, Brett A Kaufman. BMC Genomics 2014
63
38

The regulation and functions of DNA and RNA G-quadruplexes.
Dhaval Varshney, Jochen Spiegel, Katherine Zyner, David Tannahill, Shankar Balasubramanian. Nat Rev Mol Cell Biol 2020
278
38

Re-evaluation of G-quadruplex propensity with G4Hunter.
Amina Bedrat, Laurent Lacroix, Jean-Louis Mergny. Nucleic Acids Res 2016
304
33

Complementary roles of Pif1 helicase and single stranded DNA binding proteins in stimulating DNA replication through G-quadruplexes.
Melanie A Sparks, Saurabh P Singh, Peter M Burgers, Roberto Galletto. Nucleic Acids Res 2019
25
27

High-throughput sequencing of DNA G-quadruplex structures in the human genome.
Vicki S Chambers, Giovanni Marsico, Jonathan M Boutell, Marco Di Antonio, Geoffrey P Smith, Shankar Balasubramanian. Nat Biotechnol 2015
615
27

Prevalence of quadruplexes in the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2005
27

G-quadruplex dynamics contribute to regulation of mitochondrial gene expression.
M Falabella, J E Kolesar, C Wallace, D de Jesus, L Sun, Y V Taguchi, C Wang, T Wang, I M Xiang, J K Alder,[...]. Sci Rep 2019
37
27


DNA damage and genome instability by G-quadruplex ligands are mediated by R loops in human cancer cells.
Alessio De Magis, Stefano G Manzo, Marco Russo, Jessica Marinello, Rita Morigi, Olivier Sordet, Giovanni Capranico. Proc Natl Acad Sci U S A 2019
126
22


G-quadruplex-induced instability during leading-strand replication.
Judith Lopes, Aurèle Piazza, Rodrigo Bermejo, Barry Kriegsman, Arianna Colosio, Marie-Paule Teulade-Fichou, Marco Foiani, Alain Nicolas. EMBO J 2011
217
22

Quantitative visualization of DNA G-quadruplex structures in human cells.
Giulia Biffi, David Tannahill, John McCafferty, Shankar Balasubramanian. Nat Chem 2013
22

Whole genome experimental maps of DNA G-quadruplexes in multiple species.
Giovanni Marsico, Vicki S Chambers, Aleksandr B Sahakyan, Patrick McCauley, Jonathan M Boutell, Marco Di Antonio, Shankar Balasubramanian. Nucleic Acids Res 2019
141
22

Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription.
Adam Siddiqui-Jain, Cory L Grand, David J Bearss, Laurence H Hurley. Proc Natl Acad Sci U S A 2002
22

Recent Progress of Targeted G-Quadruplex-Preferred Ligands Toward Cancer Therapy.
Sefan Asamitsu, Shunsuke Obata, Zutao Yu, Toshikazu Bando, Hiroshi Sugiyama. Molecules 2019
143
22

Pif1 family helicases suppress genome instability at G-quadruplex motifs.
Katrin Paeschke, Matthew L Bochman, P Daniela Garcia, Petr Cejka, Katherine L Friedman, Stephen C Kowalczykowski, Virginia A Zakian. Nature 2013
312
22

Oxidative DNA damage is epigenetic by regulating gene transcription via base excision repair.
Aaron M Fleming, Yun Ding, Cynthia J Burrows. Proc Natl Acad Sci U S A 2017
186
22

Potential Roles for G-Quadruplexes in Mitochondria.
Micol Falabella, Rafael J Fernandez, F Brad Johnson, Brett A Kaufman. Curr Med Chem 2019
32
22

Human Translesion Polymerase κ Exhibits Enhanced Activity and Reduced Fidelity Two Nucleotides from G-Quadruplex DNA.
Sarah Eddy, Magdalena Tillman, Leena Maddukuri, Amit Ketkar, Maroof K Zafar, Robert L Eoff. Biochemistry 2016
25
22

G4Hunter web application: a web server for G-quadruplex prediction.
Václav Brázda, Jan Kolomazník, Jiří Lýsek, Martin Bartas, Miroslav Fojta, Jiří Šťastný, Jean-Louis Mergny. Bioinformatics 2019
68
22


Mitochondrial and nuclear localization of human Pif1 helicase.
Kazunobu Futami, Akira Shimamoto, Yasuhiro Furuichi. Biol Pharm Bull 2007
53
16

Inactivation of Pif1 helicase causes a mitochondrial myopathy in mice.
Sylvie Bannwarth, Laetitia Berg-Alonso, Gaëlle Augé, Konstantina Fragaki, Jill E Kolesar, Françoise Lespinasse, Sandra Lacas-Gervais, Fanny Burel-Vandenbos, Elodie Villa, Frances Belmonte,[...]. Mitochondrion 2016
21
16

Alternative translation initiation augments the human mitochondrial proteome.
Lawrence Kazak, Aurelio Reyes, Anna L Duncan, Joanna Rorbach, Stuart R Wood, Gloria Brea-Calvo, Payam A Gammage, Alan J Robinson, Michal Minczuk, Ian J Holt. Nucleic Acids Res 2013
44
16

Reconstitution of a minimal mtDNA replisome in vitro.
Jenny A Korhonen, Xuan Hoi Pham, Mina Pellegrini, Maria Falkenberg. EMBO J 2004
268
16

Mammalian DNA2 helicase/nuclease cleaves G-quadruplex DNA and is required for telomere integrity.
Weiqiang Lin, Shilpa Sampathi, Huifang Dai, Changwei Liu, Mian Zhou, Jenny Hu, Qin Huang, Judith Campbell, Kazuo Shin-Ya, Li Zheng,[...]. EMBO J 2013
99
16

Mutagenic capacity of endogenous G4 DNA underlies genome instability in FANCJ-defective C. elegans.
Evelien Kruisselbrink, Victor Guryev, Karin Brouwer, Daphne B Pontier, Edwin Cuppen, Marcel Tijsterman. Curr Biol 2008
149
16

Local epigenetic reprogramming induced by G-quadruplex ligands.
Guillaume Guilbaud, Pierre Murat, Bénédicte Recolin, Beth C Campbell, Ahmed Maiter, Julian E Sale, Shankar Balasubramanian. Nat Chem 2017
61
16

G-quadruplex structures mark human regulatory chromatin.
Robert Hänsel-Hertsch, Dario Beraldi, Stefanie V Lensing, Giovanni Marsico, Katherine Zyner, Aled Parry, Marco Di Antonio, Jeremy Pike, Hiroshi Kimura, Masashi Narita,[...]. Nat Genet 2016
409
16

Involvement of G-quadruplex regions in mammalian replication origin activity.
Paulina Prorok, Marie Artufel, Antoine Aze, Philippe Coulombe, Isabelle Peiffer, Laurent Lacroix, Aurore Guédin, Jean-Louis Mergny, Julia Damaschke, Aloys Schepers,[...]. Nat Commun 2019
62
16

Highly prevalent putative quadruplex sequence motifs in human DNA.
Alan K Todd, Matthew Johnston, Stephen Neidle. Nucleic Acids Res 2005
698
16

DNA secondary structures and epigenetic determinants of cancer genome evolution.
Subhajyoti De, Franziska Michor. Nat Struct Mol Biol 2011
152
16

Genomic distribution and functional analyses of potential G-quadruplex-forming sequences in Saccharomyces cerevisiae.
Steve G Hershman, Qijun Chen, Julia Y Lee, Marina L Kozak, Peng Yue, Li-San Wang, F Brad Johnson. Nucleic Acids Res 2008
206
16

Quadruplex DNA: sequence, topology and structure.
Sarah Burge, Gary N Parkinson, Pascale Hazel, Alan K Todd, Stephen Neidle. Nucleic Acids Res 2006
16

A guide to computational methods for G-quadruplex prediction.
Emilia Puig Lombardi, Arturo Londoño-Vallejo. Nucleic Acids Res 2020
49
16

Epigenetic suppression of human telomerase (hTERT) is mediated by the metastasis suppressor NME2 in a G-quadruplex-dependent fashion.
Dhurjhoti Saha, Ankita Singh, Tabish Hussain, Vivek Srivastava, Suman Sengupta, Anirban Kar, Parashar Dhapola, Vishnu Dhople, Ramesh Ummanni, Shantanu Chowdhury. J Biol Chem 2017
35
16


Short loop length and high thermal stability determine genomic instability induced by G-quadruplex-forming minisatellites.
Aurèle Piazza, Michael Adrian, Frédéric Samazan, Brahim Heddi, Florian Hamon, Alexandre Serero, Judith Lopes, Marie-Paule Teulade-Fichou, Anh Tuân Phan, Alain Nicolas. EMBO J 2015
88
16

Transcription regulation of CDKN1A (p21/CIP1/WAF1) by TRF2 is epigenetically controlled through the REST repressor complex.
Tabish Hussain, Dhurjhoti Saha, Gunjan Purohit, Anirban Kar, Anand Kishore Mukherjee, Shalu Sharma, Suman Sengupta, Parashar Dhapola, Basudeb Maji, Sreekanth Vedagopuram,[...]. Sci Rep 2017
33
16

FANCJ coordinates two pathways that maintain epigenetic stability at G-quadruplex DNA.
Peter Sarkies, Pierre Murat, Lara G Phillips, K J Patel, Shankar Balasubramanian, Julian E Sale. Nucleic Acids Res 2012
149
16

Disruption of dog-1 in Caenorhabditis elegans triggers deletions upstream of guanine-rich DNA.
Iris Cheung, Michael Schertzer, Ann Rose, Peter M Lansdorp. Nat Genet 2002
208
16

DNA G-quadruplexes show strong interaction with DNA methyltransferases in vitro.
Simone L Cree, Rayleen Fredericks, Allison Miller, F Grant Pearce, Vyacheslav Filichev, Conan Fee, Martin A Kennedy. FEBS Lett 2016
23
16

Direct evidence of mitochondrial G-quadruplex DNA by using fluorescent anti-cancer agents.
Wei-Chun Huang, Ting-Yuan Tseng, Ying-Ting Chen, Cheng-Chung Chang, Zi-Fu Wang, Chiung-Lin Wang, Tsu-Ning Hsu, Pei-Tzu Li, Chin-Tin Chen, Jing-Jer Lin,[...]. Nucleic Acids Res 2015
66
16


ATR-X syndrome protein targets tandem repeats and influences allele-specific expression in a size-dependent manner.
Martin J Law, Karen M Lower, Hsiao P J Voon, Jim R Hughes, David Garrick, Vip Viprakasit, Matthew Mitson, Marco De Gobbi, Marco Marra, Andrew Morris,[...]. Cell 2010
285
16

PrimPol Is Required for Replicative Tolerance of G Quadruplexes in Vertebrate Cells.
Davide Schiavone, Stanislaw K Jozwiakowski, Marina Romanello, Guillaume Guilbaud, Thomas A Guilliam, Laura J Bailey, Julian E Sale, Aidan J Doherty. Mol Cell 2016
101
16

Mitochondrial DNA deletions are associated with non-B DNA conformations.
Joana Damas, João Carneiro, Joana Gonçalves, James B Stewart, David C Samuels, António Amorim, Filipe Pereira. Nucleic Acids Res 2012
42
16

Epigenetic instability due to defective replication of structured DNA.
Peter Sarkies, Charlie Reams, Laura J Simpson, Julian E Sale. Mol Cell 2010
194
16

Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation.
Pooja Rawal, Veera Bhadra Rao Kummarasetti, Jinoy Ravindran, Nirmal Kumar, Kangkan Halder, Rakesh Sharma, Mitali Mukerji, Swapan Kumar Das, Shantanu Chowdhury. Genome Res 2006
234
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.