A citation-based method for searching scientific literature

Amelia Cervera, Marcos de la Peña. Nucleic Acids Res 2020
Times Cited: 7







List of co-cited articles
61 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Circular RNAs are abundant, conserved, and associated with ALU repeats.
William R Jeck, Jessica A Sorrentino, Kai Wang, Michael K Slevin, Christin E Burd, Jinze Liu, William F Marzluff, Norman E Sharpless. RNA 2013
57

The Biogenesis, Functions, and Challenges of Circular RNAs.
Xiang Li, Li Yang, Ling-Ling Chen. Mol Cell 2018
727
57

Diverse alternative back-splicing and alternative splicing landscape of circular RNAs.
Xiao-Ou Zhang, Rui Dong, Yang Zhang, Jia-Lin Zhang, Zheng Luo, Jun Zhang, Ling-Ling Chen, Li Yang. Genome Res 2016
411
57

Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types.
Julia Salzman, Charles Gawad, Peter Lincoln Wang, Norman Lacayo, Patrick O Brown. PLoS One 2012
57

Natural RNA circles function as efficient microRNA sponges.
Thomas B Hansen, Trine I Jensen, Bettina H Clausen, Jesper B Bramsen, Bente Finsen, Christian K Damgaard, Jørgen Kjems. Nature 2013
57

Circular RNAs are a large class of animal RNAs with regulatory potency.
Sebastian Memczak, Marvin Jens, Antigoni Elefsinioti, Francesca Torti, Janna Krueger, Agnieszka Rybak, Luisa Maier, Sebastian D Mackowiak, Lea H Gregersen, Mathias Munschauer,[...]. Nature 2013
57

Circular intronic long noncoding RNAs.
Yang Zhang, Xiao-Ou Zhang, Tian Chen, Jian-Feng Xiang, Qing-Fei Yin, Yu-Hang Xing, Shanshan Zhu, Li Yang, Ling-Ling Chen. Mol Cell 2013
42

Insights into the biogenesis and potential functions of exonic circular RNA.
Chikako Ragan, Gregory J Goodall, Nikolay E Shirokikh, Thomas Preiss. Sci Rep 2019
57
42

Eukaryotic penelope-like retroelements encode hammerhead ribozyme motifs.
Amelia Cervera, Marcos De la Peña. Mol Biol Evol 2014
26
42

Giant Reverse Transcriptase-Encoding Transposable Elements at Telomeres.
Irina R Arkhipova, Irina A Yushenova, Fernando Rodriguez. Mol Biol Evol 2017
16
42

Chemistry and Biology of Self-Cleaving Ribozymes.
Randi M Jimenez, Julio A Polanco, Andrej Lupták. Trends Biochem Sci 2015
95
42

RNAMotif, an RNA secondary structure definition and search algorithm.
T J Macke, D J Ecker, R R Gutell, D Gautheret, D A Case, R Sampath. Nucleic Acids Res 2001
295
42


The biogenesis, biology and characterization of circular RNAs.
Lasse S Kristensen, Maria S Andersen, Lotte V W Stagsted, Karoline K Ebbesen, Thomas B Hansen, Jørgen Kjems. Nat Rev Genet 2019
960
28

Cell-type specific features of circular RNA expression.
Julia Salzman, Raymond E Chen, Mari N Olsen, Peter L Wang, Patrick O Brown. PLoS Genet 2013
28

Identification and Characterization of Circular Intronic RNAs Derived from Insulin Gene.
Debojyoti Das, Aniruddha Das, Mousumi Sahu, Smruti Sambhav Mishra, Shaheerah Khan, Pruthvi R Bejugam, Pranita K Rout, Arundhati Das, Shehnaz Bano, Gyan Prakash Mishra,[...]. Int J Mol Sci 2020
5
40

Computational Strategies for Exploring Circular RNAs.
Yuan Gao, Fangqing Zhao. Trends Genet 2018
76
28

ciRS-7 exonic sequence is embedded in a long non-coding RNA locus.
Steven P Barrett, Kevin R Parker, Caroline Horn, Miguel Mata, Julia Salzman. PLoS Genet 2017
39
28

Interior circular RNA.
Xiaoxin Liu, Zhangfeng Hu, Junfei Zhou, Cheng Tian, Guangmei Tian, Miao He, Lifen Gao, Lihong Chen, Tiantian Li, Hai Peng,[...]. RNA Biol 2020
9
28

Past, present, and future of circRNAs.
Ines Lucia Patop, Stas Wüst, Sebastian Kadener. EMBO J 2019
266
28

Transcriptome-wide discovery of circular RNAs in Archaea.
Miri Danan, Schraga Schwartz, Sarit Edelheit, Rotem Sorek. Nucleic Acids Res 2012
335
28


Large-scale analysis of branchpoint usage across species and cell lines.
Allison J Taggart, Chien-Ling Lin, Barsha Shrestha, Claire Heintzelman, Seongwon Kim, William G Fairbrother. Genome Res 2017
44
28

Cell Type-Selective Expression of Circular RNAs in Human Pancreatic Islets.
Simranjeet Kaur, Aashiq H Mirza, Flemming Pociot. Noncoding RNA 2018
18
28

miRNA-dependent gene silencing involving Ago2-mediated cleavage of a circular antisense RNA.
Thomas B Hansen, Erik D Wiklund, Jesper B Bramsen, Sune B Villadsen, Aaron L Statham, Susan J Clark, Jørgen Kjems. EMBO J 2011
584
28

Biogenesis and Functions of Circular RNAs Come into Focus.
Mei-Sheng Xiao, Yuxi Ai, Jeremy E Wilusz. Trends Cell Biol 2020
90
28

Analysis of pig transcriptomes suggests a global regulation mechanism enabling temporary bursts of circular RNAs.
Annie Robic, Thomas Faraut, Sarah Djebali, Rosemarie Weikard, Katia Feve, Sarah Maman, Christa Kuehn. RNA Biol 2019
8
28

Lariat intronic RNAs in the cytoplasm of Xenopus tropicalis oocytes.
Gaëlle J S Talhouarne, Joseph G Gall. RNA 2014
80
28

Intriguing circles: Conflicts and controversies in circular RNA research.
Hui-Min Li, Xiu-Lan Ma, Hong-Gang Li. Wiley Interdiscip Rev RNA 2019
51
28

Mammalian deltavirus without hepadnavirus coinfection in the neotropical rodent Proechimys semispinosus.
Sofia Paraskevopoulou, Fabian Pirzer, Nora Goldmann, Julian Schmid, Victor Max Corman, Lina Theresa Gottula, Simon Schroeder, Andrea Rasche, Doreen Muth, Jan Felix Drexler,[...]. Proc Natl Acad Sci U S A 2020
13
28


The Hammerhead Ribozyme: A Long History for a Short RNA.
Marcos de la Peña, Inmaculada García-Robles, Amelia Cervera. Molecules 2017
26
28

Ubiquitous presence of the hammerhead ribozyme motif along the tree of life.
Marcos de la Peña, Inmaculada García-Robles. RNA 2010
68
28


New classes of self-cleaving ribozymes revealed by comparative genomics analysis.
Zasha Weinberg, Peter B Kim, Tony H Chen, Sanshu Li, Kimberly A Harris, Christina E Lünse, Ronald R Breaker. Nat Chem Biol 2015
112
28

Control of gene expression by a natural metabolite-responsive ribozyme.
Wade C Winkler, Ali Nahvi, Adam Roth, Jennifer A Collins, Ronald R Breaker. Nature 2004
596
28



Identification of a Novel Deltavirus in Boa Constrictors.
Udo Hetzel, Leonóra Szirovicza, Teemu Smura, Barbara Prähauser, Olli Vapalahti, Anja Kipar, Jussi Hepojoki. mBio 2019
36
28



Widespread occurrence of self-cleaving ribozymes.
Chiu-Ho T Webb, Nathan J Riccitelli, Dana J Ruminski, Andrej Lupták. Science 2009
131
28

Autolytic processing of dimeric plant virus satellite RNA.
G A Prody, J T Bakos, J M Buzayan, I R Schneider, G Bruening. Science 1986
439
28

Circular RNA is expressed across the eukaryotic tree of life.
Peter L Wang, Yun Bao, Muh-Ching Yee, Steven P Barrett, Gregory J Hogan, Mari N Olsen, José R Dinneny, Patrick O Brown, Julia Salzman. PLoS One 2014
434
28



A widespread self-cleaving ribozyme class is revealed by bioinformatics.
Adam Roth, Zasha Weinberg, Andy G Y Chen, Peter B Kim, Tyler D Ames, Ronald R Breaker. Nat Chem Biol 2014
139
28

Viroids are single-stranded covalently closed circular RNA molecules existing as highly base-paired rod-like structures.
H L Sanger, G Klotz, D Riesner, H J Gross, A K Kleinschmidt. Proc Natl Acad Sci U S A 1976
28

Self-cleavage of plus and minus RNA transcripts of avocado sunblotch viroid.
C J Hutchins, P D Rathjen, A C Forster, R H Symons. Nucleic Acids Res 1986
422
28

Identification of hammerhead ribozymes in all domains of life reveals novel structural variations.
Jonathan Perreault, Zasha Weinberg, Adam Roth, Olivia Popescu, Pascal Chartrand, Gerardo Ferbeyre, Ronald R Breaker. PLoS Comput Biol 2011
92
28


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.